{
    "general": {
        "date": "2024-06-10 06:14:35",
        "title": "encode_2024.LV.endothelial_cell.H",
        "description": "No description",
        "pipeline_ver": "v1.10.0",
        "pipeline_type": "atac",
        "genome": "hg38",
        "aligner": "bowtie2",
        "seq_endedness": {
            "rep1": {
                "paired_end": true
            }
        },
        "peak_caller": "macs2"
    },
    "align": {
        "frac_reads_in_annot": {
            "rep1": {
                "fri_dhs": 0.49724170843607374,
                "fri_blacklist": 0.030207597016597768,
                "fri_prom": 0.24634886878634896,
                "fri_enh": 0.3273205217982041
            }
        }
    },
    "replication": {
        "reproducibility": {
            "overlap": {
                "Nt": 0,
                "N1": 136609,
                "Np": 0,
                "N_opt": 136609,
                "N_consv": 136609,
                "opt_set": "rep1-pr1_vs_rep1-pr2",
                "consv_set": "rep1-pr1_vs_rep1-pr2",
                "rescue_ratio": 0.0,
                "self_consistency_ratio": 1.0,
                "reproducibility": "pass"
            },
            "idr": {
                "Nt": 0,
                "N1": 86359,
                "Np": 0,
                "N_opt": 86359,
                "N_consv": 86359,
                "opt_set": "rep1-pr1_vs_rep1-pr2",
                "consv_set": "rep1-pr1_vs_rep1-pr2",
                "rescue_ratio": 0.0,
                "self_consistency_ratio": 1.0,
                "reproducibility": "pass"
            }
        },
        "num_peaks": {
            "rep1": {
                "num_peaks": 192222
            }
        }
    },
    "peak_stat": {
        "peak_region_size": {
            "rep1": {
                "min_size": 150.0,
                "25_pct": 239.0,
                "50_pct": 452.0,
                "75_pct": 821.0,
                "max_size": 2809.0,
                "mean": 575.9298935605706
            },
            "idr_opt": {
                "min_size": 150.0,
                "25_pct": 585.0,
                "50_pct": 835.0,
                "75_pct": 1116.0,
                "max_size": 2809.0,
                "mean": 875.5282946768722
            },
            "overlap_opt": {
                "min_size": 150.0,
                "25_pct": 406.0,
                "50_pct": 642.0,
                "75_pct": 966.0,
                "max_size": 2809.0,
                "mean": 720.3213697486989
            }
        }
    },
    "peak_enrich": {
        "frac_reads_in_peaks": {
            "macs2": {
                "rep1": {
                    "frip": 0.3976861869163446
                },
                "rep1-pr1": {
                    "frip": 0.38783841034614763
                },
                "rep1-pr2": {
                    "frip": 0.3898325606112272
                }
            },
            "overlap": {
                "rep1-pr1_vs_rep1-pr2": {
                    "frip": 0.3768369990395366
                }
            },
            "idr": {
                "rep1-pr1_vs_rep1-pr2": {
                    "frip": 0.3375676154773952
                }
            }
        }
    }
}
