{
    "general": {
        "date": "2024-06-10 04:59:30",
        "title": "encode_2024.LV.endocardial.NI",
        "description": "No description",
        "pipeline_ver": "v1.10.0",
        "pipeline_type": "atac",
        "genome": "hg38",
        "aligner": "bowtie2",
        "seq_endedness": {
            "rep1": {
                "paired_end": true
            }
        },
        "peak_caller": "macs2"
    },
    "align": {
        "frac_reads_in_annot": {
            "rep1": {
                "fri_dhs": 0.44242922474042257,
                "fri_blacklist": 0.02846297101298168,
                "fri_prom": 0.20619328635568168,
                "fri_enh": 0.31132821209559575
            }
        }
    },
    "replication": {
        "reproducibility": {
            "overlap": {
                "Nt": 0,
                "N1": 51142,
                "Np": 0,
                "N_opt": 51142,
                "N_consv": 51142,
                "opt_set": "rep1-pr1_vs_rep1-pr2",
                "consv_set": "rep1-pr1_vs_rep1-pr2",
                "rescue_ratio": 0.0,
                "self_consistency_ratio": 1.0,
                "reproducibility": "pass"
            },
            "idr": {
                "Nt": 0,
                "N1": 24138,
                "Np": 0,
                "N_opt": 24138,
                "N_consv": 24138,
                "opt_set": "rep1-pr1_vs_rep1-pr2",
                "consv_set": "rep1-pr1_vs_rep1-pr2",
                "rescue_ratio": 0.0,
                "self_consistency_ratio": 1.0,
                "reproducibility": "pass"
            }
        },
        "num_peaks": {
            "rep1": {
                "num_peaks": 288821
            }
        }
    },
    "peak_stat": {
        "peak_region_size": {
            "rep1": {
                "min_size": 150.0,
                "25_pct": 150.0,
                "50_pct": 201.0,
                "75_pct": 305.0,
                "max_size": 1789.0,
                "mean": 271.12704408612944
            },
            "idr_opt": {
                "min_size": 150.0,
                "25_pct": 507.0,
                "50_pct": 684.0,
                "75_pct": 870.0,
                "max_size": 1789.0,
                "mean": 703.0563841246168
            },
            "overlap_opt": {
                "min_size": 150.0,
                "25_pct": 339.0,
                "50_pct": 501.0,
                "75_pct": 719.0,
                "max_size": 1789.0,
                "mean": 554.2132298306675
            }
        }
    },
    "peak_enrich": {
        "frac_reads_in_peaks": {
            "macs2": {
                "rep1": {
                    "frip": 0.4149933351191899
                },
                "rep1-pr1": {
                    "frip": 0.3719024755813603
                },
                "rep1-pr2": {
                    "frip": 0.3481340252620719
                }
            },
            "overlap": {
                "rep1-pr1_vs_rep1-pr2": {
                    "frip": 0.2466923423647414
                }
            },
            "idr": {
                "rep1-pr1_vs_rep1-pr2": {
                    "frip": 0.17632964773177504
                }
            }
        }
    }
}
