{
    "general": {
        "date": "2024-06-10 04:58:20",
        "title": "encode_2024.LV.endocardial.In",
        "description": "No description",
        "pipeline_ver": "v1.10.0",
        "pipeline_type": "atac",
        "genome": "hg38",
        "aligner": "bowtie2",
        "seq_endedness": {
            "rep1": {
                "paired_end": true
            }
        },
        "peak_caller": "macs2"
    },
    "align": {
        "frac_reads_in_annot": {
            "rep1": {
                "fri_dhs": 0.5107165487609044,
                "fri_blacklist": 0.045954602664814895,
                "fri_prom": 0.2504804478972267,
                "fri_enh": 0.32126296601709997
            }
        }
    },
    "replication": {
        "reproducibility": {
            "overlap": {
                "Nt": 0,
                "N1": 30332,
                "Np": 0,
                "N_opt": 30332,
                "N_consv": 30332,
                "opt_set": "rep1-pr1_vs_rep1-pr2",
                "consv_set": "rep1-pr1_vs_rep1-pr2",
                "rescue_ratio": 0.0,
                "self_consistency_ratio": 1.0,
                "reproducibility": "pass"
            },
            "idr": {
                "Nt": 0,
                "N1": 3328,
                "Np": 0,
                "N_opt": 3328,
                "N_consv": 3328,
                "opt_set": "rep1-pr1_vs_rep1-pr2",
                "consv_set": "rep1-pr1_vs_rep1-pr2",
                "rescue_ratio": 0.0,
                "self_consistency_ratio": 1.0,
                "reproducibility": "pass"
            }
        },
        "num_peaks": {
            "rep1": {
                "num_peaks": 299438
            }
        }
    },
    "peak_stat": {
        "peak_region_size": {
            "rep1": {
                "min_size": 150.0,
                "25_pct": 150.0,
                "50_pct": 205.0,
                "75_pct": 293.0,
                "max_size": 1298.0,
                "mean": 234.37313567416294
            },
            "idr_opt": {
                "min_size": 150.0,
                "25_pct": 385.0,
                "50_pct": 498.0,
                "75_pct": 628.0,
                "max_size": 1268.0,
                "mean": 517.2635216346154
            },
            "overlap_opt": {
                "min_size": 150.0,
                "25_pct": 251.0,
                "50_pct": 347.0,
                "75_pct": 469.0,
                "max_size": 1298.0,
                "mean": 375.57998153765
            }
        }
    },
    "peak_enrich": {
        "frac_reads_in_peaks": {
            "macs2": {
                "rep1": {
                    "frip": 0.7004635215485439
                },
                "rep1-pr1": {
                    "frip": 0.8097065063035349
                },
                "rep1-pr2": {
                    "frip": 0.8113776509312112
                }
            },
            "overlap": {
                "rep1-pr1_vs_rep1-pr2": {
                    "frip": 0.25357145957206717
                }
            },
            "idr": {
                "rep1-pr1_vs_rep1-pr2": {
                    "frip": 0.0671420511262532
                }
            }
        }
    }
}