{
    "general": {
        "date": "2024-06-10 12:47:28",
        "title": "encode_2024.LV.cardiomyocyte.NI",
        "description": "No description",
        "pipeline_ver": "v1.10.0",
        "pipeline_type": "atac",
        "genome": "hg38",
        "aligner": "bowtie2",
        "seq_endedness": {
            "rep1": {
                "paired_end": true
            }
        },
        "peak_caller": "macs2"
    },
    "align": {
        "frac_reads_in_annot": {
            "rep1": {
                "fri_dhs": 0.45895322678153727,
                "fri_blacklist": 0.018191616062526946,
                "fri_prom": 0.19626377051923982,
                "fri_enh": 0.3650378011720486
            }
        }
    },
    "replication": {
        "reproducibility": {
            "overlap": {
                "Nt": 0,
                "N1": 279007,
                "Np": 0,
                "N_opt": 279007,
                "N_consv": 279007,
                "opt_set": "rep1-pr1_vs_rep1-pr2",
                "consv_set": "rep1-pr1_vs_rep1-pr2",
                "rescue_ratio": 0.0,
                "self_consistency_ratio": 1.0,
                "reproducibility": "pass"
            },
            "idr": {
                "Nt": 0,
                "N1": 206349,
                "Np": 0,
                "N_opt": 206349,
                "N_consv": 206349,
                "opt_set": "rep1-pr1_vs_rep1-pr2",
                "consv_set": "rep1-pr1_vs_rep1-pr2",
                "rescue_ratio": 0.0,
                "self_consistency_ratio": 1.0,
                "reproducibility": "pass"
            }
        },
        "num_peaks": {
            "rep1": {
                "num_peaks": 299461
            }
        }
    },
    "peak_stat": {
        "peak_region_size": {
            "rep1": {
                "min_size": 150.0,
                "25_pct": 530.0,
                "50_pct": 907.0,
                "75_pct": 1357.0,
                "max_size": 4621.0,
                "mean": 996.242308681264
            },
            "idr_opt": {
                "min_size": 150.0,
                "25_pct": 738.0,
                "50_pct": 1095.0,
                "75_pct": 1506.0,
                "max_size": 4621.0,
                "mean": 1162.4592898439053
            },
            "overlap_opt": {
                "min_size": 150.0,
                "25_pct": 586.0,
                "50_pct": 957.0,
                "75_pct": 1396.0,
                "max_size": 4621.0,
                "mean": 1041.2910715501762
            }
        }
    },
    "peak_enrich": {
        "frac_reads_in_peaks": {
            "macs2": {
                "rep1": {
                    "frip": 0.41633048109410503
                },
                "rep1-pr1": {
                    "frip": 0.39705809649103874
                },
                "rep1-pr2": {
                    "frip": 0.401333751258379
                }
            },
            "overlap": {
                "rep1-pr1_vs_rep1-pr2": {
                    "frip": 0.40843011256912426
                }
            },
            "idr": {
                "rep1-pr1_vs_rep1-pr2": {
                    "frip": 0.3741010324643976
                }
            }
        }
    }
}
