{
    "general": {
        "date": "2024-06-10 20:21:02",
        "title": "encode_2024.LV.cardiomyocyte.H",
        "description": "No description",
        "pipeline_ver": "v1.10.0",
        "pipeline_type": "atac",
        "genome": "hg38",
        "aligner": "bowtie2",
        "seq_endedness": {
            "rep1": {
                "paired_end": true
            }
        },
        "peak_caller": "macs2"
    },
    "align": {
        "frac_reads_in_annot": {
            "rep1": {
                "fri_dhs": 0.5164833173644737,
                "fri_blacklist": 0.013846069556289144,
                "fri_prom": 0.23335903001110272,
                "fri_enh": 0.38444989051427114
            }
        }
    },
    "replication": {
        "reproducibility": {
            "overlap": {
                "Nt": 0,
                "N1": 283850,
                "Np": 0,
                "N_opt": 283850,
                "N_consv": 283850,
                "opt_set": "rep1-pr1_vs_rep1-pr2",
                "consv_set": "rep1-pr1_vs_rep1-pr2",
                "rescue_ratio": 0.0,
                "self_consistency_ratio": 1.0,
                "reproducibility": "pass"
            },
            "idr": {
                "Nt": 0,
                "N1": 229209,
                "Np": 0,
                "N_opt": 229209,
                "N_consv": 229209,
                "opt_set": "rep1-pr1_vs_rep1-pr2",
                "consv_set": "rep1-pr1_vs_rep1-pr2",
                "rescue_ratio": 0.0,
                "self_consistency_ratio": 1.0,
                "reproducibility": "pass"
            }
        },
        "num_peaks": {
            "rep1": {
                "num_peaks": 299620
            }
        }
    },
    "peak_stat": {
        "peak_region_size": {
            "rep1": {
                "min_size": 150.0,
                "25_pct": 423.0,
                "50_pct": 736.0,
                "75_pct": 1136.0,
                "max_size": 3848.0,
                "mean": 826.1551899072158
            },
            "idr_opt": {
                "min_size": 150.0,
                "25_pct": 571.0,
                "50_pct": 877.0,
                "75_pct": 1245.0,
                "max_size": 3832.0,
                "mean": 944.0276123537907
            },
            "overlap_opt": {
                "min_size": 150.0,
                "25_pct": 457.0,
                "50_pct": 768.0,
                "75_pct": 1160.0,
                "max_size": 3848.0,
                "mean": 855.2595349656509
            }
        }
    },
    "peak_enrich": {
        "frac_reads_in_peaks": {
            "macs2": {
                "rep1": {
                    "frip": 0.4826778389839008
                },
                "rep1-pr1": {
                    "frip": 0.47757330166555617
                },
                "rep1-pr2": {
                    "frip": 0.47539174191190364
                }
            },
            "overlap": {
                "rep1-pr1_vs_rep1-pr2": {
                    "frip": 0.47687464237881233
                }
            },
            "idr": {
                "rep1-pr1_vs_rep1-pr2": {
                    "frip": 0.452791133651153
                }
            }
        }
    }
}
