{
    "general": {
        "date": "2024-06-10 05:15:18",
        "title": "encode_2024.LV.adipocyte.NI",
        "description": "No description",
        "pipeline_ver": "v1.10.0",
        "pipeline_type": "atac",
        "genome": "hg38",
        "aligner": "bowtie2",
        "seq_endedness": {
            "rep1": {
                "paired_end": true
            }
        },
        "peak_caller": "macs2"
    },
    "align": {
        "frac_reads_in_annot": {
            "rep1": {
                "fri_dhs": 0.4349034111009463,
                "fri_blacklist": 0.017452089437381253,
                "fri_prom": 0.18086890734564645,
                "fri_enh": 0.34907190910502967
            }
        }
    },
    "replication": {
        "reproducibility": {
            "overlap": {
                "Nt": 0,
                "N1": 51960,
                "Np": 0,
                "N_opt": 51960,
                "N_consv": 51960,
                "opt_set": "rep1-pr1_vs_rep1-pr2",
                "consv_set": "rep1-pr1_vs_rep1-pr2",
                "rescue_ratio": 0.0,
                "self_consistency_ratio": 1.0,
                "reproducibility": "pass"
            },
            "idr": {
                "Nt": 0,
                "N1": 15036,
                "Np": 0,
                "N_opt": 15036,
                "N_consv": 15036,
                "opt_set": "rep1-pr1_vs_rep1-pr2",
                "consv_set": "rep1-pr1_vs_rep1-pr2",
                "rescue_ratio": 0.0,
                "self_consistency_ratio": 1.0,
                "reproducibility": "pass"
            }
        },
        "num_peaks": {
            "rep1": {
                "num_peaks": 167343
            }
        }
    },
    "peak_stat": {
        "peak_region_size": {
            "rep1": {
                "min_size": 150.0,
                "25_pct": 150.0,
                "50_pct": 207.0,
                "75_pct": 315.0,
                "max_size": 1700.0,
                "mean": 271.68080529212455
            },
            "idr_opt": {
                "min_size": 150.0,
                "25_pct": 430.0,
                "50_pct": 584.0,
                "75_pct": 763.0,
                "max_size": 1700.0,
                "mean": 612.9485235434956
            },
            "overlap_opt": {
                "min_size": 150.0,
                "25_pct": 229.0,
                "50_pct": 343.0,
                "75_pct": 536.0,
                "max_size": 1700.0,
                "mean": 411.0141070053888
            }
        }
    },
    "peak_enrich": {
        "frac_reads_in_peaks": {
            "macs2": {
                "rep1": {
                    "frip": 0.3675088161104933
                },
                "rep1-pr1": {
                    "frip": 0.5433331285937699
                },
                "rep1-pr2": {
                    "frip": 0.5342291487273255
                }
            },
            "overlap": {
                "rep1-pr1_vs_rep1-pr2": {
                    "frip": 0.21492794442735
                }
            },
            "idr": {
                "rep1-pr1_vs_rep1-pr2": {
                    "frip": 0.1154179613006561
                }
            }
        }
    }
}
