{
    "general": {
        "date": "2024-06-10 05:12:02",
        "title": "encode_2024.LV.adipocyte.I",
        "description": "No description",
        "pipeline_ver": "v1.10.0",
        "pipeline_type": "atac",
        "genome": "hg38",
        "aligner": "bowtie2",
        "seq_endedness": {
            "rep1": {
                "paired_end": true
            }
        },
        "peak_caller": "macs2"
    },
    "align": {
        "frac_reads_in_annot": {
            "rep1": {
                "fri_dhs": 0.42540834251416887,
                "fri_blacklist": 0.02098493407341394,
                "fri_prom": 0.1903391880164951,
                "fri_enh": 0.3305416576027844
            }
        }
    },
    "replication": {
        "reproducibility": {
            "overlap": {
                "Nt": 0,
                "N1": 20534,
                "Np": 0,
                "N_opt": 20534,
                "N_consv": 20534,
                "opt_set": "rep1-pr1_vs_rep1-pr2",
                "consv_set": "rep1-pr1_vs_rep1-pr2",
                "rescue_ratio": 0.0,
                "self_consistency_ratio": 1.0,
                "reproducibility": "pass"
            },
            "idr": {
                "Nt": 0,
                "N1": 258,
                "Np": 0,
                "N_opt": 258,
                "N_consv": 258,
                "opt_set": "rep1-pr1_vs_rep1-pr2",
                "consv_set": "rep1-pr1_vs_rep1-pr2",
                "rescue_ratio": 0.0,
                "self_consistency_ratio": 1.0,
                "reproducibility": "pass"
            }
        },
        "num_peaks": {
            "rep1": {
                "num_peaks": 299538
            }
        }
    },
    "peak_stat": {
        "peak_region_size": {
            "rep1": {
                "min_size": 150.0,
                "25_pct": 150.0,
                "50_pct": 205.0,
                "75_pct": 295.0,
                "max_size": 1296.0,
                "mean": 230.6789489146619
            },
            "idr_opt": {
                "min_size": 150.0,
                "25_pct": 339.0,
                "50_pct": 451.0,
                "75_pct": 587.75,
                "max_size": 959.0,
                "mean": 475.56976744186045
            },
            "overlap_opt": {
                "min_size": 150.0,
                "25_pct": 237.0,
                "50_pct": 334.0,
                "75_pct": 447.0,
                "max_size": 1296.0,
                "mean": 355.3630563942729
            }
        }
    },
    "peak_enrich": {
        "frac_reads_in_peaks": {
            "macs2": {
                "rep1": {
                    "frip": 0.7528086339618405
                },
                "rep1-pr1": {
                    "frip": 0.869188018394375
                },
                "rep1-pr2": {
                    "frip": 0.8637326908682634
                }
            },
            "overlap": {
                "rep1-pr1_vs_rep1-pr2": {
                    "frip": 0.15891032253386383
                }
            },
            "idr": {
                "rep1-pr1_vs_rep1-pr2": {
                    "frip": 0.005706152446312579
                }
            }
        }
    }
}
