{
    "general": {
        "date": "2024-06-10 05:02:44",
        "title": "encode_2024.LV.adipocyte.H",
        "description": "No description",
        "pipeline_ver": "v1.10.0",
        "pipeline_type": "atac",
        "genome": "hg38",
        "aligner": "bowtie2",
        "seq_endedness": {
            "rep1": {
                "paired_end": true
            }
        },
        "peak_caller": "macs2"
    },
    "align": {
        "frac_reads_in_annot": {
            "rep1": {
                "fri_dhs": 0.4258094266247269,
                "fri_blacklist": 0.014279151807161317,
                "fri_prom": 0.17427788940670685,
                "fri_enh": 0.34614494461218004
            }
        }
    },
    "replication": {
        "reproducibility": {
            "overlap": {
                "Nt": 0,
                "N1": 15799,
                "Np": 0,
                "N_opt": 15799,
                "N_consv": 15799,
                "opt_set": "rep1-pr1_vs_rep1-pr2",
                "consv_set": "rep1-pr1_vs_rep1-pr2",
                "rescue_ratio": 0.0,
                "self_consistency_ratio": 1.0,
                "reproducibility": "pass"
            },
            "idr": {
                "Nt": 0,
                "N1": 39,
                "Np": 0,
                "N_opt": 39,
                "N_consv": 39,
                "opt_set": "rep1-pr1_vs_rep1-pr2",
                "consv_set": "rep1-pr1_vs_rep1-pr2",
                "rescue_ratio": 0.0,
                "self_consistency_ratio": 1.0,
                "reproducibility": "pass"
            }
        },
        "num_peaks": {
            "rep1": {
                "num_peaks": 228437
            }
        }
    },
    "peak_stat": {
        "peak_region_size": {
            "rep1": {
                "min_size": 150.0,
                "25_pct": 150.0,
                "50_pct": 264.0,
                "75_pct": 334.0,
                "max_size": 1416.0,
                "mean": 267.48267137110014
            },
            "idr_opt": {
                "min_size": 223.0,
                "25_pct": 380.5,
                "50_pct": 493.0,
                "75_pct": 588.0,
                "max_size": 770.0,
                "mean": 490.05128205128204
            },
            "overlap_opt": {
                "min_size": 150.0,
                "25_pct": 275.0,
                "50_pct": 389.0,
                "75_pct": 525.0,
                "max_size": 1416.0,
                "mean": 413.79251851383
            }
        }
    },
    "peak_enrich": {
        "frac_reads_in_peaks": {
            "macs2": {
                "rep1": {
                    "frip": 0.8593598227028695
                },
                "rep1-pr1": {
                    "frip": 0.9264373781437167
                },
                "rep1-pr2": {
                    "frip": 0.9284672300732896
                }
            },
            "overlap": {
                "rep1-pr1_vs_rep1-pr2": {
                    "frip": 0.15720392326007904
                }
            },
            "idr": {
                "rep1-pr1_vs_rep1-pr2": {
                    "frip": 0.0010169336994294651
                }
            }
        }
    }
}
