{
    "general": {
        "date": "2024-06-10 07:18:38",
        "title": "domcke_2020.fetal_heart.Schwann_cells",
        "description": "No description",
        "pipeline_ver": "v1.10.0",
        "pipeline_type": "atac",
        "genome": "hg19",
        "aligner": "bowtie2",
        "seq_endedness": {
            "rep1": {
                "paired_end": true
            }
        },
        "peak_caller": "macs2"
    },
    "align": {
        "frac_reads_in_annot": {
            "rep1": {
                "fri_dhs": 0.39923118714442674,
                "fri_blacklist": 0.0014194969150631586,
                "fri_prom": 0.17583009633303373,
                "fri_enh": 0.351978835812634
            }
        }
    },
    "replication": {
        "reproducibility": {
            "overlap": {
                "Nt": 0,
                "N1": 50688,
                "Np": 0,
                "N_opt": 50688,
                "N_consv": 50688,
                "opt_set": "rep1-pr1_vs_rep1-pr2",
                "consv_set": "rep1-pr1_vs_rep1-pr2",
                "rescue_ratio": 0.0,
                "self_consistency_ratio": 1.0,
                "reproducibility": "pass"
            },
            "idr": {
                "Nt": 0,
                "N1": 24295,
                "Np": 0,
                "N_opt": 24295,
                "N_consv": 24295,
                "opt_set": "rep1-pr1_vs_rep1-pr2",
                "consv_set": "rep1-pr1_vs_rep1-pr2",
                "rescue_ratio": 0.0,
                "self_consistency_ratio": 1.0,
                "reproducibility": "pass"
            }
        },
        "num_peaks": {
            "rep1": {
                "num_peaks": 132917
            }
        }
    },
    "peak_stat": {
        "peak_region_size": {
            "rep1": {
                "min_size": 150.0,
                "25_pct": 158.0,
                "50_pct": 292.0,
                "75_pct": 560.0,
                "max_size": 2592.0,
                "mean": 428.89037519655125
            },
            "idr_opt": {
                "min_size": 150.0,
                "25_pct": 720.0,
                "50_pct": 933.0,
                "75_pct": 1163.0,
                "max_size": 2592.0,
                "mean": 952.4787404815805
            },
            "overlap_opt": {
                "min_size": 150.0,
                "25_pct": 406.0,
                "50_pct": 678.0,
                "75_pct": 979.0,
                "max_size": 2592.0,
                "mean": 721.702178030303
            }
        }
    },
    "peak_enrich": {
        "frac_reads_in_peaks": {
            "macs2": {
                "rep1": {
                    "frip": 0.25859295372678026
                },
                "rep1-pr1": {
                    "frip": 0.3062319350320333
                },
                "rep1-pr2": {
                    "frip": 0.30875314597714715
                }
            },
            "overlap": {
                "rep1-pr1_vs_rep1-pr2": {
                    "frip": 0.18639148654048018
                }
            },
            "idr": {
                "rep1-pr1_vs_rep1-pr2": {
                    "frip": 0.1349751189438467
                }
            }
        }
    }
}
