{
    "general": {
        "date": "2024-06-10 08:20:22",
        "title": "domcke_2020.fetal_brain.Astrocytes",
        "description": "No description",
        "pipeline_ver": "v1.10.0",
        "pipeline_type": "atac",
        "genome": "hg19",
        "aligner": "bowtie2",
        "seq_endedness": {
            "rep1": {
                "paired_end": true
            }
        },
        "peak_caller": "macs2"
    },
    "align": {
        "frac_reads_in_annot": {
            "rep1": {
                "fri_dhs": 0.4653433284272784,
                "fri_blacklist": 0.0008204151053897848,
                "fri_prom": 0.24357051593381274,
                "fri_enh": 0.3377327808017935
            }
        }
    },
    "replication": {
        "reproducibility": {
            "overlap": {
                "Nt": 0,
                "N1": 135147,
                "Np": 0,
                "N_opt": 135147,
                "N_consv": 135147,
                "opt_set": "rep1-pr1_vs_rep1-pr2",
                "consv_set": "rep1-pr1_vs_rep1-pr2",
                "rescue_ratio": 0.0,
                "self_consistency_ratio": 1.0,
                "reproducibility": "pass"
            },
            "idr": {
                "Nt": 0,
                "N1": 74042,
                "Np": 0,
                "N_opt": 74042,
                "N_consv": 74042,
                "opt_set": "rep1-pr1_vs_rep1-pr2",
                "consv_set": "rep1-pr1_vs_rep1-pr2",
                "rescue_ratio": 0.0,
                "self_consistency_ratio": 1.0,
                "reproducibility": "pass"
            }
        },
        "num_peaks": {
            "rep1": {
                "num_peaks": 178313
            }
        }
    },
    "peak_stat": {
        "peak_region_size": {
            "rep1": {
                "min_size": 150.0,
                "25_pct": 355.0,
                "50_pct": 814.0,
                "75_pct": 1267.0,
                "max_size": 3683.0,
                "mean": 865.8256436715214
            },
            "idr_opt": {
                "min_size": 150.0,
                "25_pct": 1030.0,
                "50_pct": 1275.0,
                "75_pct": 1542.0,
                "max_size": 3683.0,
                "mean": 1306.3438723967479
            },
            "overlap_opt": {
                "min_size": 150.0,
                "25_pct": 663.0,
                "50_pct": 1044.0,
                "75_pct": 1379.0,
                "max_size": 3683.0,
                "mean": 1052.9638615729539
            }
        }
    },
    "peak_enrich": {
        "frac_reads_in_peaks": {
            "macs2": {
                "rep1": {
                    "frip": 0.37191646959811897
                },
                "rep1-pr1": {
                    "frip": 0.37135448296819157
                },
                "rep1-pr2": {
                    "frip": 0.3664399362550703
                }
            },
            "overlap": {
                "rep1-pr1_vs_rep1-pr2": {
                    "frip": 0.3495930978481749
                }
            },
            "idr": {
                "rep1-pr1_vs_rep1-pr2": {
                    "frip": 0.29186895126478607
                }
            }
        }
    }
}
