{
    "general": {
        "date": "2024-06-10 01:34:30",
        "title": "ameen_2022.preSMC",
        "description": "No description",
        "pipeline_ver": "v1.10.0",
        "pipeline_type": "atac",
        "genome": "hg38",
        "aligner": "bowtie2",
        "seq_endedness": {
            "rep1": {
                "paired_end": true
            }
        },
        "peak_caller": "macs2"
    },
    "align": {
        "frac_reads_in_annot": {
            "rep1": {
                "fri_dhs": 0.6454992810496909,
                "fri_blacklist": 0.000798105290018371,
                "fri_prom": 0.3947727968302001,
                "fri_enh": 0.29980257240968505
            }
        }
    },
    "replication": {
        "reproducibility": {
            "overlap": {
                "Nt": 0,
                "N1": 86008,
                "Np": 0,
                "N_opt": 86008,
                "N_consv": 86008,
                "opt_set": "rep1-pr1_vs_rep1-pr2",
                "consv_set": "rep1-pr1_vs_rep1-pr2",
                "rescue_ratio": 0.0,
                "self_consistency_ratio": 1.0,
                "reproducibility": "pass"
            },
            "idr": {
                "Nt": 0,
                "N1": 43935,
                "Np": 0,
                "N_opt": 43935,
                "N_consv": 43935,
                "opt_set": "rep1-pr1_vs_rep1-pr2",
                "consv_set": "rep1-pr1_vs_rep1-pr2",
                "rescue_ratio": 0.0,
                "self_consistency_ratio": 1.0,
                "reproducibility": "pass"
            }
        },
        "num_peaks": {
            "rep1": {
                "num_peaks": 166724
            }
        }
    },
    "peak_stat": {
        "peak_region_size": {
            "rep1": {
                "min_size": 150.0,
                "25_pct": 164.0,
                "50_pct": 270.0,
                "75_pct": 539.0,
                "max_size": 2357.0,
                "mean": 404.1997312924354
            },
            "idr_opt": {
                "min_size": 150.0,
                "25_pct": 553.0,
                "50_pct": 765.0,
                "75_pct": 989.0,
                "max_size": 2357.0,
                "mean": 791.2043018094913
            },
            "overlap_opt": {
                "min_size": 150.0,
                "25_pct": 326.0,
                "50_pct": 521.0,
                "75_pct": 808.0,
                "max_size": 2357.0,
                "mean": 597.5489605618083
            }
        }
    },
    "peak_enrich": {
        "frac_reads_in_peaks": {
            "macs2": {
                "rep1": {
                    "frip": 0.5676563746275117
                },
                "rep1-pr1": {
                    "frip": 0.5946852077832926
                },
                "rep1-pr2": {
                    "frip": 0.592567885425073
                }
            },
            "overlap": {
                "rep1-pr1_vs_rep1-pr2": {
                    "frip": 0.5118744212586992
                }
            },
            "idr": {
                "rep1-pr1_vs_rep1-pr2": {
                    "frip": 0.43492159253951096
                }
            }
        }
    }
}