Alignment/Replicate 1/Pseudoreplicate 1/TAG-ALIGN	gs://neuro-variants/data/processed/ameen_2022/croo/ameen_2022.preSMC/align/rep1/pseudorep1/ameen_2022.preSMC.pr1.tagAlign.gz	None
Alignment/Replicate 1/Pseudoreplicate 2/TAG-ALIGN	gs://neuro-variants/data/processed/ameen_2022/croo/ameen_2022.preSMC/align/rep1/pseudorep2/ameen_2022.preSMC.pr2.tagAlign.gz	None
Peak/Replicate 1/Raw narrowpeak	gs://neuro-variants/data/processed/ameen_2022/croo/ameen_2022.preSMC/peak/rep1/ameen_2022.preSMC.pval0.01.300K.narrowPeak.gz	None
Peak/Replicate 1/Blacklist-filtered narrowpeak	gs://neuro-variants/data/processed/ameen_2022/croo/ameen_2022.preSMC/peak/rep1/ameen_2022.preSMC.pval0.01.300K.bfilt.narrowPeak.gz	None
Peak/Replicate 1/Blacklist-filtered narrowpeak (BigBed)	gs://neuro-variants/data/processed/ameen_2022/croo/ameen_2022.preSMC/peak/rep1/ameen_2022.preSMC.pval0.01.300K.bfilt.narrowPeak.bb	None
Peak/Replicate 1/Blacklist-filtered narrowpeak (starch)	gs://neuro-variants/data/processed/ameen_2022/croo/ameen_2022.preSMC/peak/rep1/ameen_2022.preSMC.pval0.01.300K.bfilt.narrowPeak.starch	None
Peak/Replicate 1/Blacklist-filtered narrowpeak (hammock)	gs://neuro-variants/data/processed/ameen_2022/croo/ameen_2022.preSMC/peak/rep1/ameen_2022.preSMC.pval0.01.300K.bfilt.narrowPeak.hammock.gz	None
QC and logs/Replicate 1/Fraction of peaks in reads	gs://neuro-variants/data/processed/ameen_2022/croo/ameen_2022.preSMC/qc/rep1/ameen_2022.preSMC.pval0.01.300K.bfilt.frip.qc	None
Peak/Replicate 1/Pseudoreplicate 1/Raw narrowpeak	gs://neuro-variants/data/processed/ameen_2022/croo/ameen_2022.preSMC/peak/rep1/pseudorep1/ameen_2022.preSMC.pr1.pval0.01.300K.narrowPeak.gz	None
Peak/Replicate 1/Pseudoreplicate 1/Blacklist-filtered narrowpeak	gs://neuro-variants/data/processed/ameen_2022/croo/ameen_2022.preSMC/peak/rep1/pseudorep1/ameen_2022.preSMC.pr1.pval0.01.300K.bfilt.narrowPeak.gz	None
Peak/Replicate 1/Pseudoreplicate 1/Blacklist-filtered narrowpeak (BigBed)	gs://neuro-variants/data/processed/ameen_2022/croo/ameen_2022.preSMC/peak/rep1/pseudorep1/ameen_2022.preSMC.pr1.pval0.01.300K.bfilt.narrowPeak.bb	None
Peak/Replicate 1/Pseudoreplicate 1/Blacklist-filtered narrowpeak (starch)	gs://neuro-variants/data/processed/ameen_2022/croo/ameen_2022.preSMC/peak/rep1/pseudorep1/ameen_2022.preSMC.pr1.pval0.01.300K.bfilt.narrowPeak.starch	None
Peak/Replicate 1/Pseudoreplicate 1/Blacklist-filtered narrowpeak (hammock)	gs://neuro-variants/data/processed/ameen_2022/croo/ameen_2022.preSMC/peak/rep1/pseudorep1/ameen_2022.preSMC.pr1.pval0.01.300K.bfilt.narrowPeak.hammock.gz	None
QC and logs/Replicate 1/Pseudoreplicate 1/Fraction of peaks in reads	gs://neuro-variants/data/processed/ameen_2022/croo/ameen_2022.preSMC/qc/rep1/pseudorep1/ameen_2022.preSMC.pr1.pval0.01.300K.bfilt.frip.qc	None
Peak/Replicate 1/Pseudoreplicate 2/Raw narrowpeak	gs://neuro-variants/data/processed/ameen_2022/croo/ameen_2022.preSMC/peak/rep1/pseudorep2/ameen_2022.preSMC.pr2.pval0.01.300K.narrowPeak.gz	None
Peak/Replicate 1/Pseudoreplicate 2/Blacklist-filtered narrowpeak	gs://neuro-variants/data/processed/ameen_2022/croo/ameen_2022.preSMC/peak/rep1/pseudorep2/ameen_2022.preSMC.pr2.pval0.01.300K.bfilt.narrowPeak.gz	None
Peak/Replicate 1/Pseudoreplicate 2/Blacklist-filtered narrowpeak (BigBed)	gs://neuro-variants/data/processed/ameen_2022/croo/ameen_2022.preSMC/peak/rep1/pseudorep2/ameen_2022.preSMC.pr2.pval0.01.300K.bfilt.narrowPeak.bb	None
Peak/Replicate 1/Pseudoreplicate 2/Blacklist-filtered narrowpeak (starch)	gs://neuro-variants/data/processed/ameen_2022/croo/ameen_2022.preSMC/peak/rep1/pseudorep2/ameen_2022.preSMC.pr2.pval0.01.300K.bfilt.narrowPeak.starch	None
Peak/Replicate 1/Pseudoreplicate 2/Blacklist-filtered narrowpeak (hammock)	gs://neuro-variants/data/processed/ameen_2022/croo/ameen_2022.preSMC/peak/rep1/pseudorep2/ameen_2022.preSMC.pr2.pval0.01.300K.bfilt.narrowPeak.hammock.gz	None
QC and logs/Replicate 1/Pseudoreplicate 2/Fraction of peaks in reads	gs://neuro-variants/data/processed/ameen_2022/croo/ameen_2022.preSMC/qc/rep1/pseudorep2/ameen_2022.preSMC.pr2.pval0.01.300K.bfilt.frip.qc	None
Signal/Replicate 1/MACS2 signal track (p-val)	gs://neuro-variants/data/processed/ameen_2022/croo/ameen_2022.preSMC/signal/rep1/ameen_2022.preSMC.pval.signal.bigwig	None
Signal/Replicate 1/MACS2 signal track (fold-enrichment)	gs://neuro-variants/data/processed/ameen_2022/croo/ameen_2022.preSMC/signal/rep1/ameen_2022.preSMC.fc.signal.bigwig	None
Peak/Replicate 1/Pseudorep 1 vs. pseudorep 2/Blacklist-filtered IDR peak	gs://neuro-variants/data/processed/ameen_2022/croo/ameen_2022.preSMC/peak/rep1-pseudorep1_vs_2/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.narrowPeak.gz	None
Peak/Replicate 1/Pseudorep 1 vs. pseudorep 2/Blacklist-filtered IDR peak (BigBed)	gs://neuro-variants/data/processed/ameen_2022/croo/ameen_2022.preSMC/peak/rep1-pseudorep1_vs_2/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.narrowPeak.bb	None
Peak/Replicate 1/Pseudorep 1 vs. pseudorep 2/Blacklist-filtered IDR peak (starch)	gs://neuro-variants/data/processed/ameen_2022/croo/ameen_2022.preSMC/peak/rep1-pseudorep1_vs_2/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.narrowPeak.starch	None
Peak/Replicate 1/Pseudorep 1 vs. pseudorep 2/Blacklist-filtered IDR peak (hammock)	gs://neuro-variants/data/processed/ameen_2022/croo/ameen_2022.preSMC/peak/rep1-pseudorep1_vs_2/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.narrowPeak.hammock.gz	None
Peak/Replicate 1/Pseudorep 1 vs. pseudorep 2/Unthresholded raw IDR peak	gs://neuro-variants/data/processed/ameen_2022/croo/ameen_2022.preSMC/peak/rep1-pseudorep1_vs_2/rep1-pr1_vs_rep1-pr2.idr0.05.unthresholded-peaks.txt.gz	None
QC and logs/Replicate 1/Pseudorep 1 vs. pseudorep 2/IDR plot	gs://neuro-variants/data/processed/ameen_2022/croo/ameen_2022.preSMC/qc/rep1-pseudorep1_vs_2/rep1-pr1_vs_rep1-pr2.idr0.05.unthresholded-peaks.txt.png	None
QC and logs/Replicate 1/Pseudorep 1 vs. pseudorep 2/IDR log	gs://neuro-variants/data/processed/ameen_2022/croo/ameen_2022.preSMC/qc/rep1-pseudorep1_vs_2/rep1-pr1_vs_rep1-pr2.idr0.05.log	None
QC and logs/Replicate 1/Pseudorep 1 vs. pseudorep 2/Fraction of IDR peaks in reads	gs://neuro-variants/data/processed/ameen_2022/croo/ameen_2022.preSMC/qc/rep1-pseudorep1_vs_2/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.frip.qc	None
Peak/Replicate 1/Pseudorep 1 vs. pseudorep 2/Blacklist-filtered overlap peak	gs://neuro-variants/data/processed/ameen_2022/croo/ameen_2022.preSMC/peak/rep1-pseudorep1_vs_2/rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.gz	None
Peak/Replicate 1/Pseudorep 1 vs. pseudorep 2/Blacklist-filtered overlap peak (BigBed)	gs://neuro-variants/data/processed/ameen_2022/croo/ameen_2022.preSMC/peak/rep1-pseudorep1_vs_2/rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.bb	None
Peak/Replicate 1/Pseudorep 1 vs. pseudorep 2/Blacklist-filtered overlap peak (starch)	gs://neuro-variants/data/processed/ameen_2022/croo/ameen_2022.preSMC/peak/rep1-pseudorep1_vs_2/rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.starch	None
Peak/Replicate 1/Pseudorep 1 vs. pseudorep 2/Blacklist-filtered overlap peak (hammock)	gs://neuro-variants/data/processed/ameen_2022/croo/ameen_2022.preSMC/peak/rep1-pseudorep1_vs_2/rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.hammock.gz	None
QC and logs/Replicate 1/Pseudorep 1 vs. pseudorep 2/Fraction of overlap peaks in reads	gs://neuro-variants/data/processed/ameen_2022/croo/ameen_2022.preSMC/qc/rep1-pseudorep1_vs_2/rep1-pr1_vs_rep1-pr2.overlap.bfilt.frip.qc	None
Peak/IDR reproducibility/Optimal peak	gs://neuro-variants/data/processed/ameen_2022/croo/ameen_2022.preSMC/peak/idr_reproducibility/idr.optimal_peak.narrowPeak.gz	None
Peak/IDR reproducibility/Optimal peak (BigBed)	gs://neuro-variants/data/processed/ameen_2022/croo/ameen_2022.preSMC/peak/idr_reproducibility/idr.optimal_peak.narrowPeak.bb	None
Peak/IDR reproducibility/Optimal peak (starch)	gs://neuro-variants/data/processed/ameen_2022/croo/ameen_2022.preSMC/peak/idr_reproducibility/idr.optimal_peak.narrowPeak.starch	None
Peak/IDR reproducibility/Optimal peak (hammock)	gs://neuro-variants/data/processed/ameen_2022/croo/ameen_2022.preSMC/peak/idr_reproducibility/idr.optimal_peak.narrowPeak.hammock.gz	None
Peak/IDR reproducibility/Conservative peak	gs://neuro-variants/data/processed/ameen_2022/croo/ameen_2022.preSMC/peak/idr_reproducibility/idr.conservative_peak.narrowPeak.gz	None
Peak/IDR reproducibility/Conservative peak (BigBed)	gs://neuro-variants/data/processed/ameen_2022/croo/ameen_2022.preSMC/peak/idr_reproducibility/idr.conservative_peak.narrowPeak.bb	None
Peak/IDR reproducibility/Conservative peak (starch)	gs://neuro-variants/data/processed/ameen_2022/croo/ameen_2022.preSMC/peak/idr_reproducibility/idr.conservative_peak.narrowPeak.starch	None
Peak/IDR reproducibility/Conservative peak (hammock)	gs://neuro-variants/data/processed/ameen_2022/croo/ameen_2022.preSMC/peak/idr_reproducibility/idr.conservative_peak.narrowPeak.hammock.gz	None
QC and logs/Reproducibility QC for overlap peaks	gs://neuro-variants/data/processed/ameen_2022/croo/ameen_2022.preSMC/qc/idr.reproducibility.qc	None
Peak/Overlap reproducibility/Optimal peak	gs://neuro-variants/data/processed/ameen_2022/croo/ameen_2022.preSMC/peak/overlap_reproducibility/overlap.optimal_peak.narrowPeak.gz	None
Peak/Overlap reproducibility/Optimal peak (BigBed)	gs://neuro-variants/data/processed/ameen_2022/croo/ameen_2022.preSMC/peak/overlap_reproducibility/overlap.optimal_peak.narrowPeak.bb	None
Peak/Overlap reproducibility/Optimal peak (starch)	gs://neuro-variants/data/processed/ameen_2022/croo/ameen_2022.preSMC/peak/overlap_reproducibility/overlap.optimal_peak.narrowPeak.starch	None
Peak/Overlap reproducibility/Optimal peak (hammock)	gs://neuro-variants/data/processed/ameen_2022/croo/ameen_2022.preSMC/peak/overlap_reproducibility/overlap.optimal_peak.narrowPeak.hammock.gz	None
Peak/Overlap reproducibility/Conservative peak	gs://neuro-variants/data/processed/ameen_2022/croo/ameen_2022.preSMC/peak/overlap_reproducibility/overlap.conservative_peak.narrowPeak.gz	None
Peak/Overlap reproducibility/Conservative peak (BigBed)	gs://neuro-variants/data/processed/ameen_2022/croo/ameen_2022.preSMC/peak/overlap_reproducibility/overlap.conservative_peak.narrowPeak.bb	None
Peak/Overlap reproducibility/Conservative peak (starch)	gs://neuro-variants/data/processed/ameen_2022/croo/ameen_2022.preSMC/peak/overlap_reproducibility/overlap.conservative_peak.narrowPeak.starch	None
Peak/Overlap reproducibility/Conservative peak (hammock)	gs://neuro-variants/data/processed/ameen_2022/croo/ameen_2022.preSMC/peak/overlap_reproducibility/overlap.conservative_peak.narrowPeak.hammock.gz	None
QC and logs/Reproducibility QC for IDR peaks	gs://neuro-variants/data/processed/ameen_2022/croo/ameen_2022.preSMC/qc/overlap.reproducibility.qc	None
QC and logs/Final HTML report	gs://neuro-variants/data/processed/ameen_2022/croo/ameen_2022.preSMC/qc/qc.html	None
QC and logs/Final QC JSON file	gs://neuro-variants/data/processed/ameen_2022/croo/ameen_2022.preSMC/qc/qc.json	None