{
    "general": {
        "date": "2024-06-10 01:37:59",
        "title": "ameen_2022.eCM",
        "description": "No description",
        "pipeline_ver": "v1.10.0",
        "pipeline_type": "atac",
        "genome": "hg38",
        "aligner": "bowtie2",
        "seq_endedness": {
            "rep1": {
                "paired_end": true
            }
        },
        "peak_caller": "macs2"
    },
    "align": {
        "frac_reads_in_annot": {
            "rep1": {
                "fri_dhs": 0.5618732177438949,
                "fri_blacklist": 0.0008709127410854108,
                "fri_prom": 0.2900376147363514,
                "fri_enh": 0.35749698343974595
            }
        }
    },
    "replication": {
        "reproducibility": {
            "overlap": {
                "Nt": 0,
                "N1": 94179,
                "Np": 0,
                "N_opt": 94179,
                "N_consv": 94179,
                "opt_set": "rep1-pr1_vs_rep1-pr2",
                "consv_set": "rep1-pr1_vs_rep1-pr2",
                "rescue_ratio": 0.0,
                "self_consistency_ratio": 1.0,
                "reproducibility": "pass"
            },
            "idr": {
                "Nt": 0,
                "N1": 51182,
                "Np": 0,
                "N_opt": 51182,
                "N_consv": 51182,
                "opt_set": "rep1-pr1_vs_rep1-pr2",
                "consv_set": "rep1-pr1_vs_rep1-pr2",
                "rescue_ratio": 0.0,
                "self_consistency_ratio": 1.0,
                "reproducibility": "pass"
            }
        },
        "num_peaks": {
            "rep1": {
                "num_peaks": 170378
            }
        }
    },
    "peak_stat": {
        "peak_region_size": {
            "rep1": {
                "min_size": 150.0,
                "25_pct": 172.0,
                "50_pct": 277.0,
                "75_pct": 534.0,
                "max_size": 2190.0,
                "mean": 409.57790325041964
            },
            "idr_opt": {
                "min_size": 150.0,
                "25_pct": 490.0,
                "50_pct": 723.0,
                "75_pct": 983.0,
                "max_size": 2190.0,
                "mean": 758.8570981985854
            },
            "overlap_opt": {
                "min_size": 150.0,
                "25_pct": 304.0,
                "50_pct": 486.0,
                "75_pct": 789.0,
                "max_size": 2190.0,
                "mean": 579.7136304271653
            }
        }
    },
    "peak_enrich": {
        "frac_reads_in_peaks": {
            "macs2": {
                "rep1": {
                    "frip": 0.45779699318828737
                },
                "rep1-pr1": {
                    "frip": 0.48659500521858895
                },
                "rep1-pr2": {
                    "frip": 0.4930479757461402
                }
            },
            "overlap": {
                "rep1-pr1_vs_rep1-pr2": {
                    "frip": 0.39465937025283154
                }
            },
            "idr": {
                "rep1-pr1_vs_rep1-pr2": {
                    "frip": 0.3159869193081161
                }
            }
        }
    }
}
