File table
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FilesPath
Alignment
Replicate 1
Pseudoreplicate 1
TAG-ALIGNgs://neuro-variants/data/processed/ameen_2022/croo/ameen_2022.eCM/align/rep1/pseudorep1/ameen_2022.eCM.pr1.tagAlign.gz
Pseudoreplicate 2
TAG-ALIGNgs://neuro-variants/data/processed/ameen_2022/croo/ameen_2022.eCM/align/rep1/pseudorep2/ameen_2022.eCM.pr2.tagAlign.gz
Peak
IDR reproducibility
Conservative peakgs://neuro-variants/data/processed/ameen_2022/croo/ameen_2022.eCM/peak/idr_reproducibility/idr.conservative_peak.narrowPeak.gz
Conservative peak (BigBed)gs://neuro-variants/data/processed/ameen_2022/croo/ameen_2022.eCM/peak/idr_reproducibility/idr.conservative_peak.narrowPeak.bb
Conservative peak (hammock)gs://neuro-variants/data/processed/ameen_2022/croo/ameen_2022.eCM/peak/idr_reproducibility/idr.conservative_peak.narrowPeak.hammock.gz
Conservative peak (starch)gs://neuro-variants/data/processed/ameen_2022/croo/ameen_2022.eCM/peak/idr_reproducibility/idr.conservative_peak.narrowPeak.starch
Optimal peakgs://neuro-variants/data/processed/ameen_2022/croo/ameen_2022.eCM/peak/idr_reproducibility/idr.optimal_peak.narrowPeak.gz
Optimal peak (BigBed)gs://neuro-variants/data/processed/ameen_2022/croo/ameen_2022.eCM/peak/idr_reproducibility/idr.optimal_peak.narrowPeak.bb
Optimal peak (hammock)gs://neuro-variants/data/processed/ameen_2022/croo/ameen_2022.eCM/peak/idr_reproducibility/idr.optimal_peak.narrowPeak.hammock.gz
Optimal peak (starch)gs://neuro-variants/data/processed/ameen_2022/croo/ameen_2022.eCM/peak/idr_reproducibility/idr.optimal_peak.narrowPeak.starch
Overlap reproducibility
Conservative peakgs://neuro-variants/data/processed/ameen_2022/croo/ameen_2022.eCM/peak/overlap_reproducibility/overlap.conservative_peak.narrowPeak.gz
Conservative peak (BigBed)gs://neuro-variants/data/processed/ameen_2022/croo/ameen_2022.eCM/peak/overlap_reproducibility/overlap.conservative_peak.narrowPeak.bb
Conservative peak (hammock)gs://neuro-variants/data/processed/ameen_2022/croo/ameen_2022.eCM/peak/overlap_reproducibility/overlap.conservative_peak.narrowPeak.hammock.gz
Conservative peak (starch)gs://neuro-variants/data/processed/ameen_2022/croo/ameen_2022.eCM/peak/overlap_reproducibility/overlap.conservative_peak.narrowPeak.starch
Optimal peakgs://neuro-variants/data/processed/ameen_2022/croo/ameen_2022.eCM/peak/overlap_reproducibility/overlap.optimal_peak.narrowPeak.gz
Optimal peak (BigBed)gs://neuro-variants/data/processed/ameen_2022/croo/ameen_2022.eCM/peak/overlap_reproducibility/overlap.optimal_peak.narrowPeak.bb
Optimal peak (hammock)gs://neuro-variants/data/processed/ameen_2022/croo/ameen_2022.eCM/peak/overlap_reproducibility/overlap.optimal_peak.narrowPeak.hammock.gz
Optimal peak (starch)gs://neuro-variants/data/processed/ameen_2022/croo/ameen_2022.eCM/peak/overlap_reproducibility/overlap.optimal_peak.narrowPeak.starch
Replicate 1
Pseudorep 1 vs. pseudorep 2
Blacklist-filtered IDR peakgs://neuro-variants/data/processed/ameen_2022/croo/ameen_2022.eCM/peak/rep1-pseudorep1_vs_2/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.narrowPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://neuro-variants/data/processed/ameen_2022/croo/ameen_2022.eCM/peak/rep1-pseudorep1_vs_2/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.narrowPeak.bb
Blacklist-filtered IDR peak (hammock)gs://neuro-variants/data/processed/ameen_2022/croo/ameen_2022.eCM/peak/rep1-pseudorep1_vs_2/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.narrowPeak.hammock.gz
Blacklist-filtered IDR peak (starch)gs://neuro-variants/data/processed/ameen_2022/croo/ameen_2022.eCM/peak/rep1-pseudorep1_vs_2/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.narrowPeak.starch
Blacklist-filtered overlap peakgs://neuro-variants/data/processed/ameen_2022/croo/ameen_2022.eCM/peak/rep1-pseudorep1_vs_2/rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://neuro-variants/data/processed/ameen_2022/croo/ameen_2022.eCM/peak/rep1-pseudorep1_vs_2/rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.bb
Blacklist-filtered overlap peak (hammock)gs://neuro-variants/data/processed/ameen_2022/croo/ameen_2022.eCM/peak/rep1-pseudorep1_vs_2/rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.hammock.gz
Blacklist-filtered overlap peak (starch)gs://neuro-variants/data/processed/ameen_2022/croo/ameen_2022.eCM/peak/rep1-pseudorep1_vs_2/rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.starch
Unthresholded raw IDR peakgs://neuro-variants/data/processed/ameen_2022/croo/ameen_2022.eCM/peak/rep1-pseudorep1_vs_2/rep1-pr1_vs_rep1-pr2.idr0.05.unthresholded-peaks.txt.gz
Pseudoreplicate 1
Blacklist-filtered narrowpeakgs://neuro-variants/data/processed/ameen_2022/croo/ameen_2022.eCM/peak/rep1/pseudorep1/ameen_2022.eCM.pr1.pval0.01.300K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://neuro-variants/data/processed/ameen_2022/croo/ameen_2022.eCM/peak/rep1/pseudorep1/ameen_2022.eCM.pr1.pval0.01.300K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://neuro-variants/data/processed/ameen_2022/croo/ameen_2022.eCM/peak/rep1/pseudorep1/ameen_2022.eCM.pr1.pval0.01.300K.bfilt.narrowPeak.hammock.gz
Blacklist-filtered narrowpeak (starch)gs://neuro-variants/data/processed/ameen_2022/croo/ameen_2022.eCM/peak/rep1/pseudorep1/ameen_2022.eCM.pr1.pval0.01.300K.bfilt.narrowPeak.starch
Raw narrowpeakgs://neuro-variants/data/processed/ameen_2022/croo/ameen_2022.eCM/peak/rep1/pseudorep1/ameen_2022.eCM.pr1.pval0.01.300K.narrowPeak.gz
Pseudoreplicate 2
Blacklist-filtered narrowpeakgs://neuro-variants/data/processed/ameen_2022/croo/ameen_2022.eCM/peak/rep1/pseudorep2/ameen_2022.eCM.pr2.pval0.01.300K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://neuro-variants/data/processed/ameen_2022/croo/ameen_2022.eCM/peak/rep1/pseudorep2/ameen_2022.eCM.pr2.pval0.01.300K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://neuro-variants/data/processed/ameen_2022/croo/ameen_2022.eCM/peak/rep1/pseudorep2/ameen_2022.eCM.pr2.pval0.01.300K.bfilt.narrowPeak.hammock.gz
Blacklist-filtered narrowpeak (starch)gs://neuro-variants/data/processed/ameen_2022/croo/ameen_2022.eCM/peak/rep1/pseudorep2/ameen_2022.eCM.pr2.pval0.01.300K.bfilt.narrowPeak.starch
Raw narrowpeakgs://neuro-variants/data/processed/ameen_2022/croo/ameen_2022.eCM/peak/rep1/pseudorep2/ameen_2022.eCM.pr2.pval0.01.300K.narrowPeak.gz
Blacklist-filtered narrowpeakgs://neuro-variants/data/processed/ameen_2022/croo/ameen_2022.eCM/peak/rep1/ameen_2022.eCM.pval0.01.300K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://neuro-variants/data/processed/ameen_2022/croo/ameen_2022.eCM/peak/rep1/ameen_2022.eCM.pval0.01.300K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://neuro-variants/data/processed/ameen_2022/croo/ameen_2022.eCM/peak/rep1/ameen_2022.eCM.pval0.01.300K.bfilt.narrowPeak.hammock.gz
Blacklist-filtered narrowpeak (starch)gs://neuro-variants/data/processed/ameen_2022/croo/ameen_2022.eCM/peak/rep1/ameen_2022.eCM.pval0.01.300K.bfilt.narrowPeak.starch
Raw narrowpeakgs://neuro-variants/data/processed/ameen_2022/croo/ameen_2022.eCM/peak/rep1/ameen_2022.eCM.pval0.01.300K.narrowPeak.gz
QC and logs
Replicate 1
Pseudorep 1 vs. pseudorep 2
Fraction of IDR peaks in readsgs://neuro-variants/data/processed/ameen_2022/croo/ameen_2022.eCM/qc/rep1-pseudorep1_vs_2/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://neuro-variants/data/processed/ameen_2022/croo/ameen_2022.eCM/qc/rep1-pseudorep1_vs_2/rep1-pr1_vs_rep1-pr2.overlap.bfilt.frip.qc
IDR loggs://neuro-variants/data/processed/ameen_2022/croo/ameen_2022.eCM/qc/rep1-pseudorep1_vs_2/rep1-pr1_vs_rep1-pr2.idr0.05.log
IDR plotgs://neuro-variants/data/processed/ameen_2022/croo/ameen_2022.eCM/qc/rep1-pseudorep1_vs_2/rep1-pr1_vs_rep1-pr2.idr0.05.unthresholded-peaks.txt.png
Pseudoreplicate 1
Fraction of peaks in readsgs://neuro-variants/data/processed/ameen_2022/croo/ameen_2022.eCM/qc/rep1/pseudorep1/ameen_2022.eCM.pr1.pval0.01.300K.bfilt.frip.qc
Pseudoreplicate 2
Fraction of peaks in readsgs://neuro-variants/data/processed/ameen_2022/croo/ameen_2022.eCM/qc/rep1/pseudorep2/ameen_2022.eCM.pr2.pval0.01.300K.bfilt.frip.qc
Fraction of peaks in readsgs://neuro-variants/data/processed/ameen_2022/croo/ameen_2022.eCM/qc/rep1/ameen_2022.eCM.pval0.01.300K.bfilt.frip.qc
Final HTML reportgs://neuro-variants/data/processed/ameen_2022/croo/ameen_2022.eCM/qc/qc.html
Final QC JSON filegs://neuro-variants/data/processed/ameen_2022/croo/ameen_2022.eCM/qc/qc.json
Reproducibility QC for IDR peaksgs://neuro-variants/data/processed/ameen_2022/croo/ameen_2022.eCM/qc/overlap.reproducibility.qc
Reproducibility QC for overlap peaksgs://neuro-variants/data/processed/ameen_2022/croo/ameen_2022.eCM/qc/idr.reproducibility.qc
Signal
Replicate 1
MACS2 signal track (fold-enrichment)gs://neuro-variants/data/processed/ameen_2022/croo/ameen_2022.eCM/signal/rep1/ameen_2022.eCM.fc.signal.bigwig
MACS2 signal track (p-val)gs://neuro-variants/data/processed/ameen_2022/croo/ameen_2022.eCM/signal/rep1/ameen_2022.eCM.pval.signal.bigwig
Task graph
D cluster_rep1 Replicate 1 7594728367131995577 macs2_signal_track 3665248191281908797 BW p-val 7594728367131995577->3665248191281908797 7285830958061816493 BW FC 7594728367131995577->7285830958061816493 -1649528483093011718 call_peak 3453764626242528246 Peak (bfilt) -1649528483093011718->3453764626242528246 -6568918605913077288 Peak -1649528483093011718->-6568918605913077288 -3456403104857620192 reproducibility_overlap -6568918605913077288->-3456403104857620192 -7773875579022617641 reproducibility_idr -6568918605913077288->-7773875579022617641 6858472639411139026 TAG-ALIGN 6858472639411139026->7594728367131995577 6858472639411139026->-1649528483093011718 6858472639411139026->-3456403104857620192 6858472639411139026->-7773875579022617641 5778182462976280017 Overlap Peak optimal -3456403104857620192->5778182462976280017 7104020233039710260 Overlap reproducibility -3456403104857620192->7104020233039710260 -9126135498499900861 IDR Peak optimal -7773875579022617641->-9126135498499900861 7008167156150352972 IDR reproducibility -7773875579022617641->7008167156150352972