File table
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FilesPath
Alignment
Replicate 1
Pseudoreplicate 1
TAG-ALIGNgs://neuro-variants/data/processed/ameen_2022/croo/ameen_2022.aEC/align/rep1/pseudorep1/ameen_2022.aEC.pr1.tagAlign.gz
Pseudoreplicate 2
TAG-ALIGNgs://neuro-variants/data/processed/ameen_2022/croo/ameen_2022.aEC/align/rep1/pseudorep2/ameen_2022.aEC.pr2.tagAlign.gz
Peak
IDR reproducibility
Conservative peakgs://neuro-variants/data/processed/ameen_2022/croo/ameen_2022.aEC/peak/idr_reproducibility/idr.conservative_peak.narrowPeak.gz
Conservative peak (BigBed)gs://neuro-variants/data/processed/ameen_2022/croo/ameen_2022.aEC/peak/idr_reproducibility/idr.conservative_peak.narrowPeak.bb
Conservative peak (hammock)gs://neuro-variants/data/processed/ameen_2022/croo/ameen_2022.aEC/peak/idr_reproducibility/idr.conservative_peak.narrowPeak.hammock.gz
Conservative peak (starch)gs://neuro-variants/data/processed/ameen_2022/croo/ameen_2022.aEC/peak/idr_reproducibility/idr.conservative_peak.narrowPeak.starch
Optimal peakgs://neuro-variants/data/processed/ameen_2022/croo/ameen_2022.aEC/peak/idr_reproducibility/idr.optimal_peak.narrowPeak.gz
Optimal peak (BigBed)gs://neuro-variants/data/processed/ameen_2022/croo/ameen_2022.aEC/peak/idr_reproducibility/idr.optimal_peak.narrowPeak.bb
Optimal peak (hammock)gs://neuro-variants/data/processed/ameen_2022/croo/ameen_2022.aEC/peak/idr_reproducibility/idr.optimal_peak.narrowPeak.hammock.gz
Optimal peak (starch)gs://neuro-variants/data/processed/ameen_2022/croo/ameen_2022.aEC/peak/idr_reproducibility/idr.optimal_peak.narrowPeak.starch
Overlap reproducibility
Conservative peakgs://neuro-variants/data/processed/ameen_2022/croo/ameen_2022.aEC/peak/overlap_reproducibility/overlap.conservative_peak.narrowPeak.gz
Conservative peak (BigBed)gs://neuro-variants/data/processed/ameen_2022/croo/ameen_2022.aEC/peak/overlap_reproducibility/overlap.conservative_peak.narrowPeak.bb
Conservative peak (hammock)gs://neuro-variants/data/processed/ameen_2022/croo/ameen_2022.aEC/peak/overlap_reproducibility/overlap.conservative_peak.narrowPeak.hammock.gz
Conservative peak (starch)gs://neuro-variants/data/processed/ameen_2022/croo/ameen_2022.aEC/peak/overlap_reproducibility/overlap.conservative_peak.narrowPeak.starch
Optimal peakgs://neuro-variants/data/processed/ameen_2022/croo/ameen_2022.aEC/peak/overlap_reproducibility/overlap.optimal_peak.narrowPeak.gz
Optimal peak (BigBed)gs://neuro-variants/data/processed/ameen_2022/croo/ameen_2022.aEC/peak/overlap_reproducibility/overlap.optimal_peak.narrowPeak.bb
Optimal peak (hammock)gs://neuro-variants/data/processed/ameen_2022/croo/ameen_2022.aEC/peak/overlap_reproducibility/overlap.optimal_peak.narrowPeak.hammock.gz
Optimal peak (starch)gs://neuro-variants/data/processed/ameen_2022/croo/ameen_2022.aEC/peak/overlap_reproducibility/overlap.optimal_peak.narrowPeak.starch
Replicate 1
Pseudorep 1 vs. pseudorep 2
Blacklist-filtered IDR peakgs://neuro-variants/data/processed/ameen_2022/croo/ameen_2022.aEC/peak/rep1-pseudorep1_vs_2/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.narrowPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://neuro-variants/data/processed/ameen_2022/croo/ameen_2022.aEC/peak/rep1-pseudorep1_vs_2/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.narrowPeak.bb
Blacklist-filtered IDR peak (hammock)gs://neuro-variants/data/processed/ameen_2022/croo/ameen_2022.aEC/peak/rep1-pseudorep1_vs_2/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.narrowPeak.hammock.gz
Blacklist-filtered IDR peak (starch)gs://neuro-variants/data/processed/ameen_2022/croo/ameen_2022.aEC/peak/rep1-pseudorep1_vs_2/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.narrowPeak.starch
Blacklist-filtered overlap peakgs://neuro-variants/data/processed/ameen_2022/croo/ameen_2022.aEC/peak/rep1-pseudorep1_vs_2/rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://neuro-variants/data/processed/ameen_2022/croo/ameen_2022.aEC/peak/rep1-pseudorep1_vs_2/rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.bb
Blacklist-filtered overlap peak (hammock)gs://neuro-variants/data/processed/ameen_2022/croo/ameen_2022.aEC/peak/rep1-pseudorep1_vs_2/rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.hammock.gz
Blacklist-filtered overlap peak (starch)gs://neuro-variants/data/processed/ameen_2022/croo/ameen_2022.aEC/peak/rep1-pseudorep1_vs_2/rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.starch
Unthresholded raw IDR peakgs://neuro-variants/data/processed/ameen_2022/croo/ameen_2022.aEC/peak/rep1-pseudorep1_vs_2/rep1-pr1_vs_rep1-pr2.idr0.05.unthresholded-peaks.txt.gz
Pseudoreplicate 1
Blacklist-filtered narrowpeakgs://neuro-variants/data/processed/ameen_2022/croo/ameen_2022.aEC/peak/rep1/pseudorep1/ameen_2022.aEC.pr1.pval0.01.300K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://neuro-variants/data/processed/ameen_2022/croo/ameen_2022.aEC/peak/rep1/pseudorep1/ameen_2022.aEC.pr1.pval0.01.300K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://neuro-variants/data/processed/ameen_2022/croo/ameen_2022.aEC/peak/rep1/pseudorep1/ameen_2022.aEC.pr1.pval0.01.300K.bfilt.narrowPeak.hammock.gz
Blacklist-filtered narrowpeak (starch)gs://neuro-variants/data/processed/ameen_2022/croo/ameen_2022.aEC/peak/rep1/pseudorep1/ameen_2022.aEC.pr1.pval0.01.300K.bfilt.narrowPeak.starch
Raw narrowpeakgs://neuro-variants/data/processed/ameen_2022/croo/ameen_2022.aEC/peak/rep1/pseudorep1/ameen_2022.aEC.pr1.pval0.01.300K.narrowPeak.gz
Pseudoreplicate 2
Blacklist-filtered narrowpeakgs://neuro-variants/data/processed/ameen_2022/croo/ameen_2022.aEC/peak/rep1/pseudorep2/ameen_2022.aEC.pr2.pval0.01.300K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://neuro-variants/data/processed/ameen_2022/croo/ameen_2022.aEC/peak/rep1/pseudorep2/ameen_2022.aEC.pr2.pval0.01.300K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://neuro-variants/data/processed/ameen_2022/croo/ameen_2022.aEC/peak/rep1/pseudorep2/ameen_2022.aEC.pr2.pval0.01.300K.bfilt.narrowPeak.hammock.gz
Blacklist-filtered narrowpeak (starch)gs://neuro-variants/data/processed/ameen_2022/croo/ameen_2022.aEC/peak/rep1/pseudorep2/ameen_2022.aEC.pr2.pval0.01.300K.bfilt.narrowPeak.starch
Raw narrowpeakgs://neuro-variants/data/processed/ameen_2022/croo/ameen_2022.aEC/peak/rep1/pseudorep2/ameen_2022.aEC.pr2.pval0.01.300K.narrowPeak.gz
Blacklist-filtered narrowpeakgs://neuro-variants/data/processed/ameen_2022/croo/ameen_2022.aEC/peak/rep1/ameen_2022.aEC.pval0.01.300K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://neuro-variants/data/processed/ameen_2022/croo/ameen_2022.aEC/peak/rep1/ameen_2022.aEC.pval0.01.300K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://neuro-variants/data/processed/ameen_2022/croo/ameen_2022.aEC/peak/rep1/ameen_2022.aEC.pval0.01.300K.bfilt.narrowPeak.hammock.gz
Blacklist-filtered narrowpeak (starch)gs://neuro-variants/data/processed/ameen_2022/croo/ameen_2022.aEC/peak/rep1/ameen_2022.aEC.pval0.01.300K.bfilt.narrowPeak.starch
Raw narrowpeakgs://neuro-variants/data/processed/ameen_2022/croo/ameen_2022.aEC/peak/rep1/ameen_2022.aEC.pval0.01.300K.narrowPeak.gz
QC and logs
Replicate 1
Pseudorep 1 vs. pseudorep 2
Fraction of IDR peaks in readsgs://neuro-variants/data/processed/ameen_2022/croo/ameen_2022.aEC/qc/rep1-pseudorep1_vs_2/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://neuro-variants/data/processed/ameen_2022/croo/ameen_2022.aEC/qc/rep1-pseudorep1_vs_2/rep1-pr1_vs_rep1-pr2.overlap.bfilt.frip.qc
IDR loggs://neuro-variants/data/processed/ameen_2022/croo/ameen_2022.aEC/qc/rep1-pseudorep1_vs_2/rep1-pr1_vs_rep1-pr2.idr0.05.log
IDR plotgs://neuro-variants/data/processed/ameen_2022/croo/ameen_2022.aEC/qc/rep1-pseudorep1_vs_2/rep1-pr1_vs_rep1-pr2.idr0.05.unthresholded-peaks.txt.png
Pseudoreplicate 1
Fraction of peaks in readsgs://neuro-variants/data/processed/ameen_2022/croo/ameen_2022.aEC/qc/rep1/pseudorep1/ameen_2022.aEC.pr1.pval0.01.300K.bfilt.frip.qc
Pseudoreplicate 2
Fraction of peaks in readsgs://neuro-variants/data/processed/ameen_2022/croo/ameen_2022.aEC/qc/rep1/pseudorep2/ameen_2022.aEC.pr2.pval0.01.300K.bfilt.frip.qc
Fraction of peaks in readsgs://neuro-variants/data/processed/ameen_2022/croo/ameen_2022.aEC/qc/rep1/ameen_2022.aEC.pval0.01.300K.bfilt.frip.qc
Final HTML reportgs://neuro-variants/data/processed/ameen_2022/croo/ameen_2022.aEC/qc/qc.html
Final QC JSON filegs://neuro-variants/data/processed/ameen_2022/croo/ameen_2022.aEC/qc/qc.json
Reproducibility QC for IDR peaksgs://neuro-variants/data/processed/ameen_2022/croo/ameen_2022.aEC/qc/overlap.reproducibility.qc
Reproducibility QC for overlap peaksgs://neuro-variants/data/processed/ameen_2022/croo/ameen_2022.aEC/qc/idr.reproducibility.qc
Signal
Replicate 1
MACS2 signal track (fold-enrichment)gs://neuro-variants/data/processed/ameen_2022/croo/ameen_2022.aEC/signal/rep1/ameen_2022.aEC.fc.signal.bigwig
MACS2 signal track (p-val)gs://neuro-variants/data/processed/ameen_2022/croo/ameen_2022.aEC/signal/rep1/ameen_2022.aEC.pval.signal.bigwig
Task graph
D cluster_rep1 Replicate 1 -4925859276004271450 macs2_signal_track -587449330337389162 BW p-val -4925859276004271450->-587449330337389162 -2640874906927904334 BW FC -4925859276004271450->-2640874906927904334 -8874551414542884057 call_peak -8923077805716622733 Peak (bfilt) -8874551414542884057->-8923077805716622733 5586019157203277737 Peak -8874551414542884057->5586019157203277737 7989158460906704670 reproducibility_overlap 5586019157203277737->7989158460906704670 -349590788972563378 reproducibility_idr 5586019157203277737->-349590788972563378 4382250502547925212 TAG-ALIGN 4382250502547925212->-4925859276004271450 4382250502547925212->-8874551414542884057 4382250502547925212->7989158460906704670 4382250502547925212->-349590788972563378 -5178357614958535163 Overlap Peak optimal 7989158460906704670->-5178357614958535163 -1617588123521501626 Overlap reproducibility 7989158460906704670->-1617588123521501626 -3885672917407691423 IDR Peak optimal -349590788972563378->-3885672917407691423 -2952940418643011917 IDR reproducibility -349590788972563378->-2952940418643011917