{
    "general": {
        "date": "2024-06-10 01:35:42",
        "title": "ameen_2022.aCM",
        "description": "No description",
        "pipeline_ver": "v1.10.0",
        "pipeline_type": "atac",
        "genome": "hg38",
        "aligner": "bowtie2",
        "seq_endedness": {
            "rep1": {
                "paired_end": true
            }
        },
        "peak_caller": "macs2"
    },
    "align": {
        "frac_reads_in_annot": {
            "rep1": {
                "fri_dhs": 0.6104221960731588,
                "fri_blacklist": 0.0008155448077361448,
                "fri_prom": 0.3435491786373536,
                "fri_enh": 0.3360076982097625
            }
        }
    },
    "replication": {
        "reproducibility": {
            "overlap": {
                "Nt": 0,
                "N1": 94698,
                "Np": 0,
                "N_opt": 94698,
                "N_consv": 94698,
                "opt_set": "rep1-pr1_vs_rep1-pr2",
                "consv_set": "rep1-pr1_vs_rep1-pr2",
                "rescue_ratio": 0.0,
                "self_consistency_ratio": 1.0,
                "reproducibility": "pass"
            },
            "idr": {
                "Nt": 0,
                "N1": 48001,
                "Np": 0,
                "N_opt": 48001,
                "N_consv": 48001,
                "opt_set": "rep1-pr1_vs_rep1-pr2",
                "consv_set": "rep1-pr1_vs_rep1-pr2",
                "rescue_ratio": 0.0,
                "self_consistency_ratio": 1.0,
                "reproducibility": "pass"
            }
        },
        "num_peaks": {
            "rep1": {
                "num_peaks": 177433
            }
        }
    },
    "peak_stat": {
        "peak_region_size": {
            "rep1": {
                "min_size": 150.0,
                "25_pct": 168.0,
                "50_pct": 276.0,
                "75_pct": 555.0,
                "max_size": 2634.0,
                "mean": 416.1280596055976
            },
            "idr_opt": {
                "min_size": 150.0,
                "25_pct": 555.0,
                "50_pct": 779.0,
                "75_pct": 1026.0,
                "max_size": 2273.0,
                "mean": 810.3265973625549
            },
            "overlap_opt": {
                "min_size": 150.0,
                "25_pct": 325.0,
                "50_pct": 521.0,
                "75_pct": 821.0,
                "max_size": 2634.0,
                "mean": 606.3786352404486
            }
        }
    },
    "peak_enrich": {
        "frac_reads_in_peaks": {
            "macs2": {
                "rep1": {
                    "frip": 0.527647683119565
                },
                "rep1-pr1": {
                    "frip": 0.5557971560962939
                },
                "rep1-pr2": {
                    "frip": 0.5419583362692317
                }
            },
            "overlap": {
                "rep1-pr1_vs_rep1-pr2": {
                    "frip": 0.4683466731008851
                }
            },
            "idr": {
                "rep1-pr1_vs_rep1-pr2": {
                    "frip": 0.38341289457752686
                }
            }
        }
    }
}
