File table
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FilesPath
Alignment
Replicate 1
Pseudoreplicate 1
TAG-ALIGNgs://neuro-variants/data/processed/ameen_2022/croo/ameen_2022.OFT/align/rep1/pseudorep1/ameen_2022.OFT.pr1.tagAlign.gz
Pseudoreplicate 2
TAG-ALIGNgs://neuro-variants/data/processed/ameen_2022/croo/ameen_2022.OFT/align/rep1/pseudorep2/ameen_2022.OFT.pr2.tagAlign.gz
Peak
IDR reproducibility
Conservative peakgs://neuro-variants/data/processed/ameen_2022/croo/ameen_2022.OFT/peak/idr_reproducibility/idr.conservative_peak.narrowPeak.gz
Conservative peak (BigBed)gs://neuro-variants/data/processed/ameen_2022/croo/ameen_2022.OFT/peak/idr_reproducibility/idr.conservative_peak.narrowPeak.bb
Conservative peak (hammock)gs://neuro-variants/data/processed/ameen_2022/croo/ameen_2022.OFT/peak/idr_reproducibility/idr.conservative_peak.narrowPeak.hammock.gz
Conservative peak (starch)gs://neuro-variants/data/processed/ameen_2022/croo/ameen_2022.OFT/peak/idr_reproducibility/idr.conservative_peak.narrowPeak.starch
Optimal peakgs://neuro-variants/data/processed/ameen_2022/croo/ameen_2022.OFT/peak/idr_reproducibility/idr.optimal_peak.narrowPeak.gz
Optimal peak (BigBed)gs://neuro-variants/data/processed/ameen_2022/croo/ameen_2022.OFT/peak/idr_reproducibility/idr.optimal_peak.narrowPeak.bb
Optimal peak (hammock)gs://neuro-variants/data/processed/ameen_2022/croo/ameen_2022.OFT/peak/idr_reproducibility/idr.optimal_peak.narrowPeak.hammock.gz
Optimal peak (starch)gs://neuro-variants/data/processed/ameen_2022/croo/ameen_2022.OFT/peak/idr_reproducibility/idr.optimal_peak.narrowPeak.starch
Overlap reproducibility
Conservative peakgs://neuro-variants/data/processed/ameen_2022/croo/ameen_2022.OFT/peak/overlap_reproducibility/overlap.conservative_peak.narrowPeak.gz
Conservative peak (BigBed)gs://neuro-variants/data/processed/ameen_2022/croo/ameen_2022.OFT/peak/overlap_reproducibility/overlap.conservative_peak.narrowPeak.bb
Conservative peak (hammock)gs://neuro-variants/data/processed/ameen_2022/croo/ameen_2022.OFT/peak/overlap_reproducibility/overlap.conservative_peak.narrowPeak.hammock.gz
Conservative peak (starch)gs://neuro-variants/data/processed/ameen_2022/croo/ameen_2022.OFT/peak/overlap_reproducibility/overlap.conservative_peak.narrowPeak.starch
Optimal peakgs://neuro-variants/data/processed/ameen_2022/croo/ameen_2022.OFT/peak/overlap_reproducibility/overlap.optimal_peak.narrowPeak.gz
Optimal peak (BigBed)gs://neuro-variants/data/processed/ameen_2022/croo/ameen_2022.OFT/peak/overlap_reproducibility/overlap.optimal_peak.narrowPeak.bb
Optimal peak (hammock)gs://neuro-variants/data/processed/ameen_2022/croo/ameen_2022.OFT/peak/overlap_reproducibility/overlap.optimal_peak.narrowPeak.hammock.gz
Optimal peak (starch)gs://neuro-variants/data/processed/ameen_2022/croo/ameen_2022.OFT/peak/overlap_reproducibility/overlap.optimal_peak.narrowPeak.starch
Replicate 1
Pseudorep 1 vs. pseudorep 2
Blacklist-filtered IDR peakgs://neuro-variants/data/processed/ameen_2022/croo/ameen_2022.OFT/peak/rep1-pseudorep1_vs_2/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.narrowPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://neuro-variants/data/processed/ameen_2022/croo/ameen_2022.OFT/peak/rep1-pseudorep1_vs_2/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.narrowPeak.bb
Blacklist-filtered IDR peak (hammock)gs://neuro-variants/data/processed/ameen_2022/croo/ameen_2022.OFT/peak/rep1-pseudorep1_vs_2/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.narrowPeak.hammock.gz
Blacklist-filtered IDR peak (starch)gs://neuro-variants/data/processed/ameen_2022/croo/ameen_2022.OFT/peak/rep1-pseudorep1_vs_2/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.narrowPeak.starch
Blacklist-filtered overlap peakgs://neuro-variants/data/processed/ameen_2022/croo/ameen_2022.OFT/peak/rep1-pseudorep1_vs_2/rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://neuro-variants/data/processed/ameen_2022/croo/ameen_2022.OFT/peak/rep1-pseudorep1_vs_2/rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.bb
Blacklist-filtered overlap peak (hammock)gs://neuro-variants/data/processed/ameen_2022/croo/ameen_2022.OFT/peak/rep1-pseudorep1_vs_2/rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.hammock.gz
Blacklist-filtered overlap peak (starch)gs://neuro-variants/data/processed/ameen_2022/croo/ameen_2022.OFT/peak/rep1-pseudorep1_vs_2/rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.starch
Unthresholded raw IDR peakgs://neuro-variants/data/processed/ameen_2022/croo/ameen_2022.OFT/peak/rep1-pseudorep1_vs_2/rep1-pr1_vs_rep1-pr2.idr0.05.unthresholded-peaks.txt.gz
Pseudoreplicate 1
Blacklist-filtered narrowpeakgs://neuro-variants/data/processed/ameen_2022/croo/ameen_2022.OFT/peak/rep1/pseudorep1/ameen_2022.OFT.pr1.pval0.01.300K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://neuro-variants/data/processed/ameen_2022/croo/ameen_2022.OFT/peak/rep1/pseudorep1/ameen_2022.OFT.pr1.pval0.01.300K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://neuro-variants/data/processed/ameen_2022/croo/ameen_2022.OFT/peak/rep1/pseudorep1/ameen_2022.OFT.pr1.pval0.01.300K.bfilt.narrowPeak.hammock.gz
Blacklist-filtered narrowpeak (starch)gs://neuro-variants/data/processed/ameen_2022/croo/ameen_2022.OFT/peak/rep1/pseudorep1/ameen_2022.OFT.pr1.pval0.01.300K.bfilt.narrowPeak.starch
Raw narrowpeakgs://neuro-variants/data/processed/ameen_2022/croo/ameen_2022.OFT/peak/rep1/pseudorep1/ameen_2022.OFT.pr1.pval0.01.300K.narrowPeak.gz
Pseudoreplicate 2
Blacklist-filtered narrowpeakgs://neuro-variants/data/processed/ameen_2022/croo/ameen_2022.OFT/peak/rep1/pseudorep2/ameen_2022.OFT.pr2.pval0.01.300K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://neuro-variants/data/processed/ameen_2022/croo/ameen_2022.OFT/peak/rep1/pseudorep2/ameen_2022.OFT.pr2.pval0.01.300K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://neuro-variants/data/processed/ameen_2022/croo/ameen_2022.OFT/peak/rep1/pseudorep2/ameen_2022.OFT.pr2.pval0.01.300K.bfilt.narrowPeak.hammock.gz
Blacklist-filtered narrowpeak (starch)gs://neuro-variants/data/processed/ameen_2022/croo/ameen_2022.OFT/peak/rep1/pseudorep2/ameen_2022.OFT.pr2.pval0.01.300K.bfilt.narrowPeak.starch
Raw narrowpeakgs://neuro-variants/data/processed/ameen_2022/croo/ameen_2022.OFT/peak/rep1/pseudorep2/ameen_2022.OFT.pr2.pval0.01.300K.narrowPeak.gz
Blacklist-filtered narrowpeakgs://neuro-variants/data/processed/ameen_2022/croo/ameen_2022.OFT/peak/rep1/ameen_2022.OFT.pval0.01.300K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://neuro-variants/data/processed/ameen_2022/croo/ameen_2022.OFT/peak/rep1/ameen_2022.OFT.pval0.01.300K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://neuro-variants/data/processed/ameen_2022/croo/ameen_2022.OFT/peak/rep1/ameen_2022.OFT.pval0.01.300K.bfilt.narrowPeak.hammock.gz
Blacklist-filtered narrowpeak (starch)gs://neuro-variants/data/processed/ameen_2022/croo/ameen_2022.OFT/peak/rep1/ameen_2022.OFT.pval0.01.300K.bfilt.narrowPeak.starch
Raw narrowpeakgs://neuro-variants/data/processed/ameen_2022/croo/ameen_2022.OFT/peak/rep1/ameen_2022.OFT.pval0.01.300K.narrowPeak.gz
QC and logs
Replicate 1
Pseudorep 1 vs. pseudorep 2
Fraction of IDR peaks in readsgs://neuro-variants/data/processed/ameen_2022/croo/ameen_2022.OFT/qc/rep1-pseudorep1_vs_2/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://neuro-variants/data/processed/ameen_2022/croo/ameen_2022.OFT/qc/rep1-pseudorep1_vs_2/rep1-pr1_vs_rep1-pr2.overlap.bfilt.frip.qc
IDR loggs://neuro-variants/data/processed/ameen_2022/croo/ameen_2022.OFT/qc/rep1-pseudorep1_vs_2/rep1-pr1_vs_rep1-pr2.idr0.05.log
IDR plotgs://neuro-variants/data/processed/ameen_2022/croo/ameen_2022.OFT/qc/rep1-pseudorep1_vs_2/rep1-pr1_vs_rep1-pr2.idr0.05.unthresholded-peaks.txt.png
Pseudoreplicate 1
Fraction of peaks in readsgs://neuro-variants/data/processed/ameen_2022/croo/ameen_2022.OFT/qc/rep1/pseudorep1/ameen_2022.OFT.pr1.pval0.01.300K.bfilt.frip.qc
Pseudoreplicate 2
Fraction of peaks in readsgs://neuro-variants/data/processed/ameen_2022/croo/ameen_2022.OFT/qc/rep1/pseudorep2/ameen_2022.OFT.pr2.pval0.01.300K.bfilt.frip.qc
Fraction of peaks in readsgs://neuro-variants/data/processed/ameen_2022/croo/ameen_2022.OFT/qc/rep1/ameen_2022.OFT.pval0.01.300K.bfilt.frip.qc
Final HTML reportgs://neuro-variants/data/processed/ameen_2022/croo/ameen_2022.OFT/qc/qc.html
Final QC JSON filegs://neuro-variants/data/processed/ameen_2022/croo/ameen_2022.OFT/qc/qc.json
Reproducibility QC for IDR peaksgs://neuro-variants/data/processed/ameen_2022/croo/ameen_2022.OFT/qc/overlap.reproducibility.qc
Reproducibility QC for overlap peaksgs://neuro-variants/data/processed/ameen_2022/croo/ameen_2022.OFT/qc/idr.reproducibility.qc
Signal
Replicate 1
MACS2 signal track (fold-enrichment)gs://neuro-variants/data/processed/ameen_2022/croo/ameen_2022.OFT/signal/rep1/ameen_2022.OFT.fc.signal.bigwig
MACS2 signal track (p-val)gs://neuro-variants/data/processed/ameen_2022/croo/ameen_2022.OFT/signal/rep1/ameen_2022.OFT.pval.signal.bigwig
Task graph
D cluster_rep1 Replicate 1 5621982143952046097 macs2_signal_track 8642524617523648521 BW p-val 5621982143952046097->8642524617523648521 -2827670312373640672 BW FC 5621982143952046097->-2827670312373640672 -5671066109727426522 call_peak 1132865296258320385 Peak (bfilt) -5671066109727426522->1132865296258320385 -3031620101924773135 Peak -5671066109727426522->-3031620101924773135 5015792778443743339 reproducibility_overlap -3031620101924773135->5015792778443743339 7749487368278755376 reproducibility_idr -3031620101924773135->7749487368278755376 -7068344458192800968 TAG-ALIGN -7068344458192800968->5621982143952046097 -7068344458192800968->-5671066109727426522 -7068344458192800968->5015792778443743339 -7068344458192800968->7749487368278755376 -2523726179250279720 Overlap Peak optimal 5015792778443743339->-2523726179250279720 8660535859807691697 Overlap reproducibility 5015792778443743339->8660535859807691697 -4351452392837854464 IDR Peak optimal 7749487368278755376->-4351452392837854464 -4427842623318458143 IDR reproducibility 7749487368278755376->-4427842623318458143