{
    "general": {
        "date": "2024-06-10 01:35:49",
        "title": "ameen_2022.NC",
        "description": "No description",
        "pipeline_ver": "v1.10.0",
        "pipeline_type": "atac",
        "genome": "hg38",
        "aligner": "bowtie2",
        "seq_endedness": {
            "rep1": {
                "paired_end": true
            }
        },
        "peak_caller": "macs2"
    },
    "align": {
        "frac_reads_in_annot": {
            "rep1": {
                "fri_dhs": 0.4783163587312136,
                "fri_blacklist": 0.001627296552109993,
                "fri_prom": 0.23161001377573057,
                "fri_enh": 0.33019109305884675
            }
        }
    },
    "replication": {
        "reproducibility": {
            "overlap": {
                "Nt": 0,
                "N1": 54565,
                "Np": 0,
                "N_opt": 54565,
                "N_consv": 54565,
                "opt_set": "rep1-pr1_vs_rep1-pr2",
                "consv_set": "rep1-pr1_vs_rep1-pr2",
                "rescue_ratio": 0.0,
                "self_consistency_ratio": 1.0,
                "reproducibility": "pass"
            },
            "idr": {
                "Nt": 0,
                "N1": 21715,
                "Np": 0,
                "N_opt": 21715,
                "N_consv": 21715,
                "opt_set": "rep1-pr1_vs_rep1-pr2",
                "consv_set": "rep1-pr1_vs_rep1-pr2",
                "rescue_ratio": 0.0,
                "self_consistency_ratio": 1.0,
                "reproducibility": "pass"
            }
        },
        "num_peaks": {
            "rep1": {
                "num_peaks": 151812
            }
        }
    },
    "peak_stat": {
        "peak_region_size": {
            "rep1": {
                "min_size": 150.0,
                "25_pct": 150.0,
                "50_pct": 184.0,
                "75_pct": 297.0,
                "max_size": 1717.0,
                "mean": 259.8422259109952
            },
            "idr_opt": {
                "min_size": 150.0,
                "25_pct": 404.0,
                "50_pct": 545.0,
                "75_pct": 694.0,
                "max_size": 1717.0,
                "mean": 561.8117430347686
            },
            "overlap_opt": {
                "min_size": 150.0,
                "25_pct": 200.0,
                "50_pct": 323.0,
                "75_pct": 520.0,
                "max_size": 1717.0,
                "mean": 385.198332264272
            }
        }
    },
    "peak_enrich": {
        "frac_reads_in_peaks": {
            "macs2": {
                "rep1": {
                    "frip": 0.43233994327319275
                },
                "rep1-pr1": {
                    "frip": 0.6783775079795472
                },
                "rep1-pr2": {
                    "frip": 0.6645999645201348
                }
            },
            "overlap": {
                "rep1-pr1_vs_rep1-pr2": {
                    "frip": 0.2999264475604539
                }
            },
            "idr": {
                "rep1-pr1_vs_rep1-pr2": {
                    "frip": 0.22048128404273684
                }
            }
        }
    }
}
