{
    "general": {
        "date": "2024-06-10 01:38:29",
        "title": "ameen_2022.Endo2",
        "description": "No description",
        "pipeline_ver": "v1.10.0",
        "pipeline_type": "atac",
        "genome": "hg38",
        "aligner": "bowtie2",
        "seq_endedness": {
            "rep1": {
                "paired_end": true
            }
        },
        "peak_caller": "macs2"
    },
    "align": {
        "frac_reads_in_annot": {
            "rep1": {
                "fri_dhs": 0.6107826122037052,
                "fri_blacklist": 0.0009877379783530735,
                "fri_prom": 0.3641492112445679,
                "fri_enh": 0.30655349307148466
            }
        }
    },
    "replication": {
        "reproducibility": {
            "overlap": {
                "Nt": 0,
                "N1": 103828,
                "Np": 0,
                "N_opt": 103828,
                "N_consv": 103828,
                "opt_set": "rep1-pr1_vs_rep1-pr2",
                "consv_set": "rep1-pr1_vs_rep1-pr2",
                "rescue_ratio": 0.0,
                "self_consistency_ratio": 1.0,
                "reproducibility": "pass"
            },
            "idr": {
                "Nt": 0,
                "N1": 53172,
                "Np": 0,
                "N_opt": 53172,
                "N_consv": 53172,
                "opt_set": "rep1-pr1_vs_rep1-pr2",
                "consv_set": "rep1-pr1_vs_rep1-pr2",
                "rescue_ratio": 0.0,
                "self_consistency_ratio": 1.0,
                "reproducibility": "pass"
            }
        },
        "num_peaks": {
            "rep1": {
                "num_peaks": 199782
            }
        }
    },
    "peak_stat": {
        "peak_region_size": {
            "rep1": {
                "min_size": 150.0,
                "25_pct": 172.0,
                "50_pct": 301.0,
                "75_pct": 621.0,
                "max_size": 2814.0,
                "mean": 451.45227297754553
            },
            "idr_opt": {
                "min_size": 150.0,
                "25_pct": 624.0,
                "50_pct": 857.0,
                "75_pct": 1113.0,
                "max_size": 2814.0,
                "mean": 888.6672684871737
            },
            "overlap_opt": {
                "min_size": 150.0,
                "25_pct": 372.0,
                "50_pct": 598.0,
                "75_pct": 909.0,
                "max_size": 2814.0,
                "mean": 673.2682128134993
            }
        }
    },
    "peak_enrich": {
        "frac_reads_in_peaks": {
            "macs2": {
                "rep1": {
                    "frip": 0.5313197232234533
                },
                "rep1-pr1": {
                    "frip": 0.5653336989313474
                },
                "rep1-pr2": {
                    "frip": 0.5444565800284367
                }
            },
            "overlap": {
                "rep1-pr1_vs_rep1-pr2": {
                    "frip": 0.47358321589971153
                }
            },
            "idr": {
                "rep1-pr1_vs_rep1-pr2": {
                    "frip": 0.395030659563962
                }
            }
        }
    }
}