{
    "general": {
        "date": "2024-06-10 01:41:09",
        "title": "ameen_2022.Endo1",
        "description": "No description",
        "pipeline_ver": "v1.10.0",
        "pipeline_type": "atac",
        "genome": "hg38",
        "aligner": "bowtie2",
        "seq_endedness": {
            "rep1": {
                "paired_end": true
            }
        },
        "peak_caller": "macs2"
    },
    "align": {
        "frac_reads_in_annot": {
            "rep1": {
                "fri_dhs": 0.619027991997335,
                "fri_blacklist": 0.0006873318737519906,
                "fri_prom": 0.32419670072998324,
                "fri_enh": 0.36350074230687024
            }
        }
    },
    "replication": {
        "reproducibility": {
            "overlap": {
                "Nt": 0,
                "N1": 108730,
                "Np": 0,
                "N_opt": 108730,
                "N_consv": 108730,
                "opt_set": "rep1-pr1_vs_rep1-pr2",
                "consv_set": "rep1-pr1_vs_rep1-pr2",
                "rescue_ratio": 0.0,
                "self_consistency_ratio": 1.0,
                "reproducibility": "pass"
            },
            "idr": {
                "Nt": 0,
                "N1": 56044,
                "Np": 0,
                "N_opt": 56044,
                "N_consv": 56044,
                "opt_set": "rep1-pr1_vs_rep1-pr2",
                "consv_set": "rep1-pr1_vs_rep1-pr2",
                "rescue_ratio": 0.0,
                "self_consistency_ratio": 1.0,
                "reproducibility": "pass"
            }
        },
        "num_peaks": {
            "rep1": {
                "num_peaks": 174613
            }
        }
    },
    "peak_stat": {
        "peak_region_size": {
            "rep1": {
                "min_size": 150.0,
                "25_pct": 200.0,
                "50_pct": 359.0,
                "75_pct": 673.0,
                "max_size": 2314.0,
                "mean": 479.5136730942141
            },
            "idr_opt": {
                "min_size": 150.0,
                "25_pct": 581.0,
                "50_pct": 797.0,
                "75_pct": 1043.0,
                "max_size": 2314.0,
                "mean": 829.5496752551567
            },
            "overlap_opt": {
                "min_size": 150.0,
                "25_pct": 367.0,
                "50_pct": 576.0,
                "75_pct": 855.0,
                "max_size": 2314.0,
                "mean": 641.3074956313804
            }
        }
    },
    "peak_enrich": {
        "frac_reads_in_peaks": {
            "macs2": {
                "rep1": {
                    "frip": 0.5292511269392888
                },
                "rep1-pr1": {
                    "frip": 0.5328621465858698
                },
                "rep1-pr2": {
                    "frip": 0.5483872396389943
                }
            },
            "overlap": {
                "rep1-pr1_vs_rep1-pr2": {
                    "frip": 0.47623347139663447
                }
            },
            "idr": {
                "rep1-pr1_vs_rep1-pr2": {
                    "frip": 0.3733410741209296
                }
            }
        }
    }
}