{
    "general": {
        "date": "2024-06-10 01:49:44",
        "title": "ameen_2022.EPC",
        "description": "No description",
        "pipeline_ver": "v1.10.0",
        "pipeline_type": "atac",
        "genome": "hg38",
        "aligner": "bowtie2",
        "seq_endedness": {
            "rep1": {
                "paired_end": true
            }
        },
        "peak_caller": "macs2"
    },
    "align": {
        "frac_reads_in_annot": {
            "rep1": {
                "fri_dhs": 0.5892765646554418,
                "fri_blacklist": 0.0012271147662329548,
                "fri_prom": 0.31184384447894486,
                "fri_enh": 0.34059332176554563
            }
        }
    },
    "replication": {
        "reproducibility": {
            "overlap": {
                "Nt": 0,
                "N1": 64455,
                "Np": 0,
                "N_opt": 64455,
                "N_consv": 64455,
                "opt_set": "rep1-pr1_vs_rep1-pr2",
                "consv_set": "rep1-pr1_vs_rep1-pr2",
                "rescue_ratio": 0.0,
                "self_consistency_ratio": 1.0,
                "reproducibility": "pass"
            },
            "idr": {
                "Nt": 0,
                "N1": 19733,
                "Np": 0,
                "N_opt": 19733,
                "N_consv": 19733,
                "opt_set": "rep1-pr1_vs_rep1-pr2",
                "consv_set": "rep1-pr1_vs_rep1-pr2",
                "rescue_ratio": 0.0,
                "self_consistency_ratio": 1.0,
                "reproducibility": "pass"
            }
        },
        "num_peaks": {
            "rep1": {
                "num_peaks": 299423
            }
        }
    },
    "peak_stat": {
        "peak_region_size": {
            "rep1": {
                "min_size": 150.0,
                "25_pct": 150.0,
                "50_pct": 224.0,
                "75_pct": 324.0,
                "max_size": 1733.0,
                "mean": 272.09551036493525
            },
            "idr_opt": {
                "min_size": 150.0,
                "25_pct": 442.0,
                "50_pct": 590.0,
                "75_pct": 756.0,
                "max_size": 1733.0,
                "mean": 608.7559924998733
            },
            "overlap_opt": {
                "min_size": 150.0,
                "25_pct": 261.0,
                "50_pct": 387.0,
                "75_pct": 551.0,
                "max_size": 1733.0,
                "mean": 430.1996431618959
            }
        }
    },
    "peak_enrich": {
        "frac_reads_in_peaks": {
            "macs2": {
                "rep1": {
                    "frip": 0.6543665194257122
                },
                "rep1-pr1": {
                    "frip": 0.8213374528717245
                },
                "rep1-pr2": {
                    "frip": 0.8072356101068595
                }
            },
            "overlap": {
                "rep1-pr1_vs_rep1-pr2": {
                    "frip": 0.3956385274622805
                }
            },
            "idr": {
                "rep1-pr1_vs_rep1-pr2": {
                    "frip": 0.24658037289292425
                }
            }
        }
    }
}
