{
    "general": {
        "date": "2024-06-10 01:48:29",
        "title": "ameen_2022.CFP",
        "description": "No description",
        "pipeline_ver": "v1.10.0",
        "pipeline_type": "atac",
        "genome": "hg38",
        "aligner": "bowtie2",
        "seq_endedness": {
            "rep1": {
                "paired_end": true
            }
        },
        "peak_caller": "macs2"
    },
    "align": {
        "frac_reads_in_annot": {
            "rep1": {
                "fri_dhs": 0.5432863307162755,
                "fri_blacklist": 0.001172172773992761,
                "fri_prom": 0.2959413224317601,
                "fri_enh": 0.3182904288121525
            }
        }
    },
    "replication": {
        "reproducibility": {
            "overlap": {
                "Nt": 0,
                "N1": 87219,
                "Np": 0,
                "N_opt": 87219,
                "N_consv": 87219,
                "opt_set": "rep1-pr1_vs_rep1-pr2",
                "consv_set": "rep1-pr1_vs_rep1-pr2",
                "rescue_ratio": 0.0,
                "self_consistency_ratio": 1.0,
                "reproducibility": "pass"
            },
            "idr": {
                "Nt": 0,
                "N1": 40392,
                "Np": 0,
                "N_opt": 40392,
                "N_consv": 40392,
                "opt_set": "rep1-pr1_vs_rep1-pr2",
                "consv_set": "rep1-pr1_vs_rep1-pr2",
                "rescue_ratio": 0.0,
                "self_consistency_ratio": 1.0,
                "reproducibility": "pass"
            }
        },
        "num_peaks": {
            "rep1": {
                "num_peaks": 172058
            }
        }
    },
    "peak_stat": {
        "peak_region_size": {
            "rep1": {
                "min_size": 150.0,
                "25_pct": 175.0,
                "50_pct": 274.0,
                "75_pct": 549.0,
                "max_size": 2181.0,
                "mean": 407.25769217356935
            },
            "idr_opt": {
                "min_size": 150.0,
                "25_pct": 596.0,
                "50_pct": 793.0,
                "75_pct": 1009.0,
                "max_size": 2181.0,
                "mean": 817.6323281837988
            },
            "overlap_opt": {
                "min_size": 150.0,
                "25_pct": 347.0,
                "50_pct": 540.0,
                "75_pct": 808.0,
                "max_size": 2181.0,
                "mean": 608.5954780495075
            }
        }
    },
    "peak_enrich": {
        "frac_reads_in_peaks": {
            "macs2": {
                "rep1": {
                    "frip": 0.43203720268113677
                },
                "rep1-pr1": {
                    "frip": 0.42725673804702624
                },
                "rep1-pr2": {
                    "frip": 0.43018375530652525
                }
            },
            "overlap": {
                "rep1-pr1_vs_rep1-pr2": {
                    "frip": 0.37989774957403893
                }
            },
            "idr": {
                "rep1-pr1_vs_rep1-pr2": {
                    "frip": 0.3025155699849158
                }
            }
        }
    }
}
