{
    "general": {
        "date": "2024-06-10 02:18:01",
        "title": "ameen_2022.CF",
        "description": "No description",
        "pipeline_ver": "v1.10.0",
        "pipeline_type": "atac",
        "genome": "hg38",
        "aligner": "bowtie2",
        "seq_endedness": {
            "rep1": {
                "paired_end": true
            }
        },
        "peak_caller": "macs2"
    },
    "align": {
        "frac_reads_in_annot": {
            "rep1": {
                "fri_dhs": 0.5407511353869807,
                "fri_blacklist": 0.001276106387582224,
                "fri_prom": 0.2701969970911499,
                "fri_enh": 0.3414216547136294
            }
        }
    },
    "replication": {
        "reproducibility": {
            "overlap": {
                "Nt": 0,
                "N1": 158303,
                "Np": 0,
                "N_opt": 158303,
                "N_consv": 158303,
                "opt_set": "rep1-pr1_vs_rep1-pr2",
                "consv_set": "rep1-pr1_vs_rep1-pr2",
                "rescue_ratio": 0.0,
                "self_consistency_ratio": 1.0,
                "reproducibility": "pass"
            },
            "idr": {
                "Nt": 0,
                "N1": 82995,
                "Np": 0,
                "N_opt": 82995,
                "N_consv": 82995,
                "opt_set": "rep1-pr1_vs_rep1-pr2",
                "consv_set": "rep1-pr1_vs_rep1-pr2",
                "rescue_ratio": 0.0,
                "self_consistency_ratio": 1.0,
                "reproducibility": "pass"
            }
        },
        "num_peaks": {
            "rep1": {
                "num_peaks": 219679
            }
        }
    },
    "peak_stat": {
        "peak_region_size": {
            "rep1": {
                "min_size": 150.0,
                "25_pct": 229.0,
                "50_pct": 425.0,
                "75_pct": 755.0,
                "max_size": 2489.0,
                "mean": 533.3430778545059
            },
            "idr_opt": {
                "min_size": 150.0,
                "25_pct": 606.0,
                "50_pct": 819.0,
                "75_pct": 1060.0,
                "max_size": 2451.0,
                "mean": 853.8955479245737
            },
            "overlap_opt": {
                "min_size": 150.0,
                "25_pct": 366.0,
                "50_pct": 591.0,
                "75_pct": 879.0,
                "max_size": 2489.0,
                "mean": 656.6973778134337
            }
        }
    },
    "peak_enrich": {
        "frac_reads_in_peaks": {
            "macs2": {
                "rep1": {
                    "frip": 0.45422046212954104
                },
                "rep1-pr1": {
                    "frip": 0.4603170145708657
                },
                "rep1-pr2": {
                    "frip": 0.4628637265276766
                }
            },
            "overlap": {
                "rep1-pr1_vs_rep1-pr2": {
                    "frip": 0.4279560157426157
                }
            },
            "idr": {
                "rep1-pr1_vs_rep1-pr2": {
                    "frip": 0.36521561484016074
                }
            }
        }
    }
}
