{
    "atac.blacklist": "/mnt/data/annotations/by_release/hg38/hg38.blacklist.bed.gz",
    "atac.chrsz": "/mnt/data/annotations/by_release/hg38/hg38.chrom.sizes",
    "atac.dnase": "/mnt/data/pipeline_genome_data/hg38/ataqc/reg2map_honeybadger2_dnase_all_p10_ucsc.hg19_to_hg38.bed.gz",
    "atac.enable_idr": "true",
    "atac.enh": "/mnt/data/pipeline_genome_data/hg38/ataqc/reg2map_honeybadger2_dnase_enh_p2.hg19_to_hg38.bed.gz",
    "atac.fingerprint_cpu": 10,
    "atac.genome.tsv": "/mnt/data/annotations/by_release/hg38_klab.tsv",
    "atac.gensz": "hs",
    "atac.idr_thresh": 0.05,
    "atac.paired_end": "true",
    "atac.pipeline_type": "atac",
    "atac.prom": "/mnt/data/pipeline_genome_data/hg38/ataqc/reg2map_honeybadger2_dnase_prom_p2.hg19_to_hg38.bed.gz",
    "atac.ref_fa": "/mnt/data/pipeline_genome_data/hg38/GRCh38_no_alt_analysis_set_GCA_000001405.15.fasta.gz",
    "atac.reg2map": "/mnt/data/pipeline_genome_data/hg38/ataqc/hg38_dnase_avg_fseq_signal_formatted.txt.gz",
    "atac.reg2map_bed": "/mnt/data/pipeline_genome_data/hg38/ataqc/hg38_celltype_compare_subsample.bed.gz",
    "atac.roadmap_meta": "/mnt/data/pipeline_genome_data/hg38/ataqc/hg38_dnase_avg_fseq_signal_metadata.txt",
    "atac.tas": [
        "/srv/scratch/annashch/alzheimers_parkinsons/pseudobulk/Cluster13.tagAlign.gz"
    ],
    "atac.tss": "/mnt/data/pipeline_genome_data/hg38/ataqc/hg38_gencode_tss_unique.bed.gz",
    "atac.xcor_cpu": 10
}