Motif Name	Consensus	P-value	Log P-value	q-value (Benjamini)	# of Target Sequences with Motif(of 110642)	% of Target Sequences with Motif	# of Background Sequences with Motif(of 109163)	% of Background Sequences with Motif
CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	AYAGTGCCMYCTRGTGGCCA	1e-6983	-1.608e+04	0.0000	10511.0	9.50%	938.8	0.86%
BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer	CNNBRGCGCCCCCTGSTGGC	1e-4184	-9.634e+03	0.0000	10962.0	9.91%	2060.8	1.90%
Fra1(bZIP)/BT549-Fra1-ChIP-Seq(GSE46166)/Homer	NNATGASTCATH	1e-3697	-8.514e+03	0.0000	15458.0	13.97%	4493.7	4.14%
Atf3(bZIP)/GBM-ATF3-ChIP-Seq(GSE33912)/Homer	DATGASTCATHN	1e-3432	-7.903e+03	0.0000	17065.0	15.42%	5636.6	5.19%
BATF(bZIP)/Th17-BATF-ChIP-Seq(GSE39756)/Homer	DATGASTCAT	1e-3293	-7.583e+03	0.0000	16543.0	14.95%	5491.7	5.06%
AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	VTGACTCATC	1e-3118	-7.180e+03	0.0000	17913.0	16.19%	6497.4	5.98%
Fosl2(bZIP)/3T3L1-Fosl2-ChIP-Seq(GSE56872)/Homer	NATGASTCABNN	1e-3071	-7.072e+03	0.0000	10579.0	9.56%	2584.1	2.38%
Jun-AP1(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	GATGASTCATCN	1e-2730	-6.287e+03	0.0000	8390.0	7.58%	1833.8	1.69%
Bach2(bZIP)/OCILy7-Bach2-ChIP-Seq(GSE44420)/Homer	TGCTGAGTCA	1e-1276	-2.939e+03	0.0000	5480.0	4.95%	1571.5	1.45%
Egr1(Zf)/K562-Egr1-ChIP-Seq(GSE32465)/Homer	TGCGTGGGYG	1e-801	-1.846e+03	0.0000	13289.0	12.01%	7527.5	6.93%
Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer	TGTCANYT	1e-729	-1.680e+03	0.0000	43715.0	39.51%	33961.4	31.28%
Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer	GTTGCCATGGCAACM	1e-694	-1.599e+03	0.0000	2685.0	2.43%	704.1	0.65%
RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer	CGGTTGCCATGGCAAC	1e-688	-1.585e+03	0.0000	2498.0	2.26%	621.9	0.57%
SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer	AVCAGCTG	1e-628	-1.447e+03	0.0000	59751.0	54.01%	49885.4	45.94%
X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	GGTTGCCATGGCAA	1e-564	-1.299e+03	0.0000	2672.0	2.42%	816.6	0.75%
Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	KGTTGCCATGGCAA	1e-471	-1.087e+03	0.0000	3896.0	3.52%	1650.0	1.52%
Bach1(bZIP)/K562-Bach1-ChIP-Seq(GSE31477)/Homer	AWWNTGCTGAGTCAT	1e-468	-1.079e+03	0.0000	1639.0	1.48%	394.5	0.36%
NF-E2(bZIP)/K562-NFE2-ChIP-Seq(GSE31477)/Homer	GATGACTCAGCA	1e-456	-1.051e+03	0.0000	1691.0	1.53%	427.5	0.39%
NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer	YTGCCAAG	1e-426	-9.812e+02	0.0000	24546.0	22.19%	18470.8	17.01%
Tgif1(Homeobox)/mES-Tgif1-ChIP-Seq(GSE55404)/Homer	YTGWCADY	1e-419	-9.664e+02	0.0000	38931.0	35.19%	31584.5	29.09%
Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer	SCCTAGCAACAG	1e-363	-8.371e+02	0.0000	5083.0	4.59%	2679.4	2.47%
Nrf2(bZIP)/Lymphoblast-Nrf2-ChIP-Seq(GSE37589)/Homer	HTGCTGAGTCAT	1e-338	-7.784e+02	0.0000	1397.0	1.26%	385.9	0.36%
NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer	GCCATCTGTT	1e-322	-7.415e+02	0.0000	12168.0	11.00%	8399.9	7.74%
Mef2d(MADS)/Retina-Mef2d-ChIP-Seq(GSE61391)/Homer	GCTATTTTTAGC	1e-311	-7.162e+02	0.0000	3648.0	3.30%	1798.7	1.66%
Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer	VNRVCAGCTGGY	1e-297	-6.860e+02	0.0000	15966.0	14.43%	11757.0	10.83%
Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer	RCCATMTGTT	1e-277	-6.400e+02	0.0000	24938.0	22.54%	19850.8	18.28%
Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer	VCAGCTGYTG	1e-268	-6.173e+02	0.0000	15014.0	13.57%	11118.0	10.24%
Ap4(bHLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer	NAHCAGCTGD	1e-263	-6.068e+02	0.0000	17634.0	15.94%	13433.1	12.37%
KLF14(Zf)/HEK293-KLF14.GFP-ChIP-Seq(GSE58341)/Homer	RGKGGGCGKGGC	1e-257	-5.930e+02	0.0000	27195.0	24.58%	22073.1	20.33%
MafK(bZIP)/C2C12-MafK-ChIP-Seq(GSE36030)/Homer	GCTGASTCAGCA	1e-238	-5.502e+02	0.0000	3746.0	3.39%	2047.7	1.89%
Egr2(Zf)/Thymocytes-Egr2-ChIP-Seq(GSE34254)/Homer	NGCGTGGGCGGR	1e-238	-5.502e+02	0.0000	3666.0	3.31%	1989.1	1.83%
MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer	TGCTGACTCA	1e-236	-5.450e+02	0.0000	10655.0	9.63%	7576.5	6.98%
MYB(HTH)/ERMYB-Myb-ChIPSeq(GSE22095)/Homer	GGCVGTTR	1e-234	-5.394e+02	0.0000	20109.0	18.18%	15846.1	14.59%
BMYB(HTH)/Hela-BMYB-ChIP-Seq(GSE27030)/Homer	NHAACBGYYV	1e-218	-5.020e+02	0.0000	17193.0	15.54%	13371.6	12.31%
AMYB(HTH)/Testes-AMYB-ChIP-Seq(GSE44588)/Homer	TGGCAGTTGG	1e-216	-4.974e+02	0.0000	17571.0	15.88%	13722.9	12.64%
MyoD(bHLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer	RRCAGCTGYTSY	1e-199	-4.596e+02	0.0000	11912.0	10.77%	8872.1	8.17%
Tcf21(bHLH)/ArterySmoothMuscle-Tcf21-ChIP-Seq(GSE61369)/Homer	NAACAGCTGG	1e-198	-4.578e+02	0.0000	13814.0	12.49%	10532.9	9.70%
Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer	VGCTGWCAVB	1e-194	-4.486e+02	0.0000	21827.0	19.73%	17730.8	16.33%
Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer	GGGGGGGG	1e-186	-4.296e+02	0.0000	18895.0	17.08%	15148.8	13.95%
Sox9(HMG)/Limb-SOX9-ChIP-Seq(GSE73225)/Homer	AGGVNCCTTTGT	1e-184	-4.255e+02	0.0000	10255.0	9.27%	7541.8	6.95%
MyoG(bHLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer	AACAGCTG	1e-171	-3.944e+02	0.0000	14896.0	13.46%	11695.4	10.77%
Ascl1(bHLH)/NeuralTubes-Ascl1-ChIP-Seq(GSE55840)/Homer	NNVVCAGCTGBN	1e-167	-3.853e+02	0.0000	22433.0	20.28%	18545.4	17.08%
Myf5(bHLH)/GM-Myf5-ChIP-Seq(GSE24852)/Homer	BAACAGCTGT	1e-162	-3.739e+02	0.0000	10065.0	9.10%	7523.6	6.93%
Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	CTGGCAGSCTGCCA	1e-157	-3.637e+02	0.0000	5869.0	5.30%	4005.3	3.69%
Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer	CCWTTGTYYB	1e-156	-3.609e+02	0.0000	19083.0	17.25%	15590.7	14.36%
Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer	CCWTTGTY	1e-151	-3.498e+02	0.0000	20042.0	18.11%	16511.5	15.21%
Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer	BCCATTGTTC	1e-145	-3.349e+02	0.0000	10206.0	9.22%	7763.5	7.15%
AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer	CCAGGAACAG	1e-112	-2.598e+02	0.0000	43793.0	39.58%	39407.2	36.29%
NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer	CYTGGCABNSTGCCAR	1e-112	-2.593e+02	0.0000	5349.0	4.83%	3816.5	3.51%
Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer	CVGTSCTCCC	1e-109	-2.532e+02	0.0000	25221.0	22.80%	21786.4	20.06%
Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	HTTTCCCASG	1e-108	-2.497e+02	0.0000	17772.0	16.06%	14895.5	13.72%
Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer	GKTAATGR	1e-99	-2.286e+02	0.0000	29043.0	26.25%	25531.9	23.51%
Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer	CCATTGTTNY	1e-98	-2.263e+02	0.0000	17749.0	16.04%	14993.8	13.81%
Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer	TWGTCTGV	1e-91	-2.098e+02	0.0000	32806.0	29.65%	29228.1	26.92%
Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer	YCTTTGTTCC	1e-90	-2.084e+02	0.0000	9734.0	8.80%	7793.0	7.18%
PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer	ADGGYAGYAGCATCT	1e-90	-2.080e+02	0.0000	5988.0	5.41%	4502.6	4.15%
PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer	VAGRACAKNCTGTBC	1e-89	-2.055e+02	0.0000	24581.0	22.22%	21474.9	19.78%
Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	CACAGCAGGGGG	1e-87	-2.018e+02	0.0000	8130.0	7.35%	6394.4	5.89%
NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	ATTTTCCATT	1e-85	-1.960e+02	0.0000	10302.0	9.31%	8353.6	7.69%
STAT4(Stat)/CD4-Stat4-ChIP-Seq(GSE22104)/Homer	NYTTCCWGGAAR	1e-83	-1.916e+02	0.0000	10645.0	9.62%	8681.7	8.00%
Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	RGCCATTAAC	1e-76	-1.760e+02	0.0000	46550.0	42.07%	42714.3	39.34%
Oct6(POU,Homeobox)/NPC-Oct6-ChIP-Seq(GSE35496)/Homer	WATGCAAATGAG	1e-76	-1.753e+02	0.0000	5129.0	4.64%	3863.4	3.56%
Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer	TAATTAGN	1e-75	-1.727e+02	0.0000	11731.0	10.60%	9753.7	8.98%
PGR(NR)/EndoStromal-PGR-ChIP-Seq(GSE69539)/Homer	AAGAACATWHTGTTC	1e-74	-1.726e+02	0.0000	2714.0	2.45%	1838.4	1.69%
Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer	ADBTAATTAR	1e-74	-1.706e+02	0.0000	18524.0	16.74%	16027.0	14.76%
Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer	YCATYAATCA	1e-72	-1.674e+02	0.0000	10940.0	9.89%	9060.8	8.34%
Stat3+il21(Stat)/CD4-Stat3-ChIP-Seq(GSE19198)/Homer	SVYTTCCNGGAARB	1e-70	-1.630e+02	0.0000	7842.0	7.09%	6290.1	5.79%
Klf9(Zf)/GBM-Klf9-ChIP-Seq(GSE62211)/Homer	GCCACRCCCACY	1e-68	-1.573e+02	0.0000	5688.0	5.14%	4408.8	4.06%
GRE(NR),IR3/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer	VAGRACAKWCTGTYC	1e-68	-1.573e+02	0.0000	2702.0	2.44%	1862.9	1.72%
Bcl6(Zf)/Liver-Bcl6-ChIP-Seq(GSE31578)/Homer	NNNCTTTCCAGGAAA	1e-60	-1.386e+02	0.0000	14808.0	13.38%	12772.2	11.76%
Sp1(Zf)/Promoter/Homer	GGCCCCGCCCCC	1e-59	-1.372e+02	0.0000	5238.0	4.73%	4086.5	3.76%
Stat3(Stat)/mES-Stat3-ChIP-Seq(GSE11431)/Homer	CTTCCGGGAA	1e-57	-1.318e+02	0.0000	5649.0	5.11%	4468.7	4.12%
Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer	GGTGYTGACAGS	1e-56	-1.293e+02	0.0000	2699.0	2.44%	1927.2	1.77%
GRE(NR),IR3/A549-GR-ChIP-Seq(GSE32465)/Homer	NRGVACABNVTGTYCY	1e-54	-1.264e+02	0.0000	1600.0	1.45%	1036.0	0.95%
ZNF467(Zf)/HEK293-ZNF467.GFP-ChIP-Seq(GSE58341)/Homer	TGGGGAAGGGCM	1e-54	-1.255e+02	0.0000	10652.0	9.63%	9015.4	8.30%
Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	TATGCWAATBAV	1e-53	-1.227e+02	0.0000	3862.0	3.49%	2937.3	2.71%
ARE(NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	RGRACASNSTGTYCYB	1e-52	-1.216e+02	0.0000	2852.0	2.58%	2076.9	1.91%
STAT6(Stat)/Macrophage-Stat6-ChIP-Seq(GSE38377)/Homer	TTCCKNAGAA	1e-50	-1.173e+02	0.0000	6033.0	5.45%	4869.2	4.48%
CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	DRTGTTGCAA	1e-49	-1.148e+02	0.0000	8699.0	7.86%	7288.0	6.71%
KLF10(Zf)/HEK293-KLF10.GFP-ChIP-Seq(GSE58341)/Homer	GGGGGTGTGTCC	1e-49	-1.138e+02	0.0000	7714.0	6.97%	6398.3	5.89%
CTCF-SatelliteElement(Zf?)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	TGCAGTTCCMVNWRTGGCCA	1e-49	-1.137e+02	0.0000	332.0	0.30%	127.2	0.12%
Fli1(ETS)/CD8-FLI-ChIP-Seq(GSE20898)/Homer	NRYTTCCGGH	1e-48	-1.109e+02	0.0000	13212.0	11.94%	11469.1	10.56%
Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer	SCTGTCAMTCAN	1e-47	-1.093e+02	0.0000	2805.0	2.54%	2071.9	1.91%
ZNF189(Zf)/HEK293-ZNF189.GFP-ChIP-Seq(GSE58341)/Homer	TGGAACAGMA	1e-46	-1.081e+02	0.0000	9552.0	8.63%	8105.7	7.46%
STAT6(Stat)/CD4-Stat6-ChIP-Seq(GSE22104)/Homer	ABTTCYYRRGAA	1e-45	-1.040e+02	0.0000	5888.0	5.32%	4798.1	4.42%
ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer	ACAGGAAGTG	1e-43	-9.937e+01	0.0000	18459.0	16.68%	16473.1	15.17%
NFY(CCAAT)/Promoter/Homer	RGCCAATSRG	1e-41	-9.483e+01	0.0000	8147.0	7.36%	6894.8	6.35%
Lhx1(Homeobox)/EmbryoCarcinoma-Lhx1-ChIP-Seq(GSE70957)/Homer	NNYTAATTAR	1e-40	-9.211e+01	0.0000	12173.0	11.00%	10632.6	9.79%
Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer	SCTGTCAVTCAV	1e-39	-9.178e+01	0.0000	2695.0	2.44%	2030.7	1.87%
ETS1(ETS)/Jurkat-ETS1-ChIP-Seq(GSE17954)/Homer	ACAGGAAGTG	1e-38	-8.937e+01	0.0000	12080.0	10.92%	10565.2	9.73%
Elk4(ETS)/Hela-Elk4-ChIP-Seq(GSE31477)/Homer	NRYTTCCGGY	1e-38	-8.800e+01	0.0000	6670.0	6.03%	5584.3	5.14%
CRE(bZIP)/Promoter/Homer	CSGTGACGTCAC	1e-37	-8.722e+01	0.0000	2513.0	2.27%	1888.8	1.74%
Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAW	1e-36	-8.493e+01	0.0000	5495.0	4.97%	4535.7	4.18%
TATA-Box(TBP)/Promoter/Homer	CCTTTTAWAGSC	1e-36	-8.432e+01	0.0000	13094.0	11.83%	11550.3	10.64%
Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer	CTGTCTGG	1e-34	-7.916e+01	0.0000	17757.0	16.05%	15986.6	14.72%
NFAT:AP1(RHD,bZIP)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	SARTGGAAAAWRTGAGTCAB	1e-34	-7.904e+01	0.0000	2111.0	1.91%	1569.1	1.45%
RBPJ:Ebox(?,bHLH)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	GGGRAARRGRMCAGMTG	1e-33	-7.720e+01	0.0000	3894.0	3.52%	3135.2	2.89%
Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer	CCTGCTGAGH	1e-33	-7.657e+01	0.0000	10270.0	9.28%	8972.9	8.26%
Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATATTC	1e-32	-7.572e+01	0.0000	1237.0	1.12%	846.5	0.78%
CHR(?)/Hela-CellCycle-Expression/Homer	SRGTTTCAAA	1e-31	-7.279e+01	0.0000	6707.0	6.06%	5704.2	5.25%
JunD(bZIP)/K562-JunD-ChIP-Seq/Homer	ATGACGTCATCN	1e-31	-7.149e+01	0.0000	975.0	0.88%	643.3	0.59%
MITF(bHLH)/MastCells-MITF-ChIP-Seq(GSE48085)/Homer	RTCATGTGAC	1e-30	-7.040e+01	0.0000	9738.0	8.80%	8522.9	7.85%
Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer	VBSYGTCTGG	1e-29	-6.817e+01	0.0000	18125.0	16.38%	16442.0	15.14%
Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer	MTGATGCAAT	1e-29	-6.803e+01	0.0000	3464.0	3.13%	2792.6	2.57%
Mef2b(MADS)/HEK293-Mef2b.V5-ChIP-Seq(GSE67450)/Homer	GCTATTTTTGGM	1e-28	-6.599e+01	0.0000	12141.0	10.97%	10805.4	9.95%
Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer	CTAATKGV	1e-28	-6.577e+01	0.0000	20120.0	18.19%	18365.5	16.91%
CArG(MADS)/PUER-Srf-ChIP-Seq(Sullivan_et_al.)/Homer	CCATATATGGNM	1e-27	-6.319e+01	0.0000	2968.0	2.68%	2372.2	2.18%
Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer	ATTAACACCT	1e-26	-6.058e+01	0.0000	24320.0	21.98%	22442.0	20.67%
Pit1+1bp(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGCATAATTCA	1e-26	-6.012e+01	0.0000	3846.0	3.48%	3171.3	2.92%
KLF5(Zf)/LoVo-KLF5-ChIP-Seq(GSE49402)/Homer	DGGGYGKGGC	1e-25	-5.901e+01	0.0000	17811.0	16.10%	16238.6	14.96%
RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer	AAYTAGGTCA	1e-25	-5.888e+01	0.0000	1296.0	1.17%	936.9	0.86%
Etv2(ETS)/ES-ER71-ChIP-Seq(GSE59402)/Homer(0.967)	NNAYTTCCTGHN	1e-25	-5.860e+01	0.0000	10444.0	9.44%	9275.8	8.54%
SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer	ASWTCCTGBT	1e-25	-5.839e+01	0.0000	10962.0	9.91%	9763.0	8.99%
PAX3:FKHR-fusion(Paired,Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer	ACCRTGACTAATTNN	1e-24	-5.533e+01	0.0000	2063.0	1.86%	1606.0	1.48%
GFY-Staf(?,Zf)/Promoter/Homer	RACTACAATTCCCAGAAKGC	1e-22	-5.287e+01	0.0000	755.0	0.68%	504.2	0.46%
OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAACAATG	1e-22	-5.200e+01	0.0000	1946.0	1.76%	1516.2	1.40%
E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer	GGCGGGAARN	1e-22	-5.129e+01	0.0000	7109.0	6.43%	6219.0	5.73%
EHF(ETS)/LoVo-EHF-ChIP-Seq(GSE49402)/Homer	AVCAGGAAGT	1e-21	-5.021e+01	0.0000	14438.0	13.05%	13126.1	12.09%
ETV1(ETS)/GIST48-ETV1-ChIP-Seq(GSE22441)/Homer	AACCGGAAGT	1e-21	-4.964e+01	0.0000	15470.0	13.98%	14113.1	13.00%
Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer	RAACAATGGN	1e-21	-4.938e+01	0.0000	12013.0	10.86%	10837.6	9.98%
GFY(?)/Promoter/Homer	ACTACAATTCCC	1e-21	-4.925e+01	0.0000	967.0	0.87%	686.2	0.63%
OCT:OCT(POU,Homeobox,IR1)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATWATTCATGA	1e-21	-4.918e+01	0.0000	279.0	0.25%	145.1	0.13%
STAT5(Stat)/mCD4+-Stat5-ChIP-Seq(GSE12346)/Homer	RTTTCTNAGAAA	1e-20	-4.763e+01	0.0000	3542.0	3.20%	2961.9	2.73%
PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer	GSCTGTCACTCA	1e-19	-4.391e+01	0.0000	992.0	0.90%	721.4	0.66%
Elk1(ETS)/Hela-Elk1-ChIP-Seq(GSE31477)/Homer	HACTTCCGGY	1e-19	-4.381e+01	0.0000	6571.0	5.94%	5776.7	5.32%
IRF:BATF(IRF:bZIP)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	CTTTCANTATGACTV	1e-18	-4.323e+01	0.0000	1283.0	1.16%	971.2	0.89%
GABPA(ETS)/Jurkat-GABPa-ChIP-Seq(GSE17954)/Homer	RACCGGAAGT	1e-18	-4.311e+01	0.0000	9986.0	9.03%	8985.8	8.28%
EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer	GTCCCCWGGGGA	1e-18	-4.287e+01	0.0000	12269.0	11.09%	11147.5	10.27%
PU.1-IRF(ETS:IRF)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	MGGAAGTGAAAC	1e-17	-4.136e+01	0.0000	15490.0	14.00%	14229.4	13.10%
ELF1(ETS)/Jurkat-ELF1-ChIP-Seq(SRA014231)/Homer	AVCCGGAAGT	1e-17	-4.038e+01	0.0000	5948.0	5.38%	5223.9	4.81%
Brachyury(T-box)/Mesoendoderm-Brachyury-ChIP-exo(GSE54963)/Homer	ANTTMRCASBNNNGTGYKAAN	1e-17	-3.978e+01	0.0000	2821.0	2.55%	2350.7	2.16%
Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGMATATDC	1e-17	-3.948e+01	0.0000	10621.0	9.60%	9622.4	8.86%
ELF5(ETS)/T47D-ELF5-ChIP-Seq(GSE30407)/Homer	ACVAGGAAGT	1e-15	-3.559e+01	0.0000	7894.0	7.13%	7087.8	6.53%
GATA:SCL(Zf,bHLH)/Ter119-SCL-ChIP-Seq(GSE18720)/Homer	CRGCTGBNGNSNNSAGATAA	1e-14	-3.427e+01	0.0000	1213.0	1.10%	941.5	0.87%
Ptf1a(bHLH)/Panc1-Ptf1a-ChIP-Seq(GSE47459)/Homer	ACAGCTGTTN	1e-14	-3.358e+01	0.0000	35188.0	31.80%	33352.8	30.72%
HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer	GGCCATAAATCA	1e-13	-3.136e+01	0.0000	6693.0	6.05%	5998.4	5.52%
EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer	ATTTCCTGTN	1e-13	-3.038e+01	0.0000	7746.0	7.00%	7000.6	6.45%
Foxo1(Forkhead)/RAW-Foxo1-ChIP-Seq(Fan_et_al.)/Homer	CTGTTTAC	1e-13	-3.035e+01	0.0000	20360.0	18.40%	19056.3	17.55%
E2F4(E2F)/K562-E2F4-ChIP-Seq(GSE31477)/Homer	GGCGGGAAAH	1e-13	-3.013e+01	0.0000	5612.0	5.07%	4995.6	4.60%
EBF(EBF)/proBcell-EBF-ChIP-Seq(GSE21978)/Homer	DGTCCCYRGGGA	1e-12	-2.971e+01	0.0000	2374.0	2.15%	2000.1	1.84%
NRF1(NRF)/MCF7-NRF1-ChIP-Seq(Unpublished)/Homer	CTGCGCATGCGC	1e-12	-2.955e+01	0.0000	2008.0	1.81%	1669.4	1.54%
USF1(bHLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer	SGTCACGTGR	1e-12	-2.908e+01	0.0000	4800.0	4.34%	4246.0	3.91%
Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer	TGATTRATGGCY	1e-12	-2.862e+01	0.0000	1852.0	1.67%	1533.1	1.41%
bZIP:IRF(bZIP,IRF)/Th17-BatF-ChIP-Seq(GSE39756)/Homer	NAGTTTCABTHTGACTNW	1e-12	-2.771e+01	0.0000	4750.0	4.29%	4210.5	3.88%
Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer	ATATGCAAAT	1e-11	-2.742e+01	0.0000	3344.0	3.02%	2906.0	2.68%
Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer	CCATTGTATGCAAAT	1e-11	-2.673e+01	0.0000	1378.0	1.25%	1117.1	1.03%
OCT:OCT(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	ATGAATATTCATGAG	1e-10	-2.470e+01	0.0000	120.0	0.11%	60.2	0.06%
EWS:FLI1-fusion(ETS)/SK_N_MC-EWS:FLI1-ChIP-Seq(SRA014231)/Homer	VACAGGAAAT	1e-10	-2.452e+01	0.0000	6244.0	5.64%	5644.8	5.20%
NRF(NRF)/Promoter/Homer	STGCGCATGCGC	1e-10	-2.402e+01	0.0000	2226.0	2.01%	1899.6	1.75%
ZBTB18(Zf)/HEK293-ZBTB18.GFP-ChIP-Seq(GSE58341)/Homer	AACATCTGGA	1e-10	-2.346e+01	0.0000	5876.0	5.31%	5308.2	4.89%
E-box(bHLH)/Promoter/Homer	SSGGTCACGTGA	1e-10	-2.314e+01	0.0000	834.0	0.75%	651.8	0.60%
Tcfcp2l1(CP2)/mES-Tcfcp2l1-ChIP-Seq(GSE11431)/Homer	NRAACCRGTTYRAACCRGYT	1e-9	-2.246e+01	0.0000	1283.0	1.16%	1052.9	0.97%
ETS(ETS)/Promoter/Homer	AACCGGAAGT	1e-9	-2.122e+01	0.0000	3615.0	3.27%	3206.1	2.95%
TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer	CCWGGAATGY	1e-9	-2.106e+01	0.0000	9269.0	8.38%	8559.2	7.88%
PU.1(ETS)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	AGAGGAAGTG	1e-9	-2.091e+01	0.0000	5223.0	4.72%	4719.6	4.35%
Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer	GGCCATAAATCA	1e-8	-2.051e+01	0.0000	4964.0	4.49%	4479.6	4.13%
Tcf4(HMG)/Hct116-Tcf4-ChIP-Seq(SRA012054)/Homer	ASATCAAAGGVA	1e-8	-2.041e+01	0.0000	4189.0	3.79%	3751.9	3.46%
Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer	GKVTCADRTTWC	1e-8	-2.026e+01	0.0000	2313.0	2.09%	2004.5	1.85%
Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer	ASWTCAAAGG	1e-8	-1.914e+01	0.0000	2209.0	2.00%	1916.5	1.77%
Chop(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	ATTGCATCAT	1e-8	-1.910e+01	0.0000	2562.0	2.32%	2243.3	2.07%
Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer	TBGCACGCAA	1e-7	-1.792e+01	0.0000	7151.0	6.46%	6583.6	6.06%
STAT1(Stat)/HelaS3-STAT1-ChIP-Seq(GSE12782)/Homer	NATTTCCNGGAAAT	1e-7	-1.789e+01	0.0000	2890.0	2.61%	2558.6	2.36%
IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer	ACTGAAACCA	1e-6	-1.383e+01	0.0000	4387.0	3.97%	4009.8	3.69%
IRF2(IRF)/Erythroblas-IRF2-ChIP-Seq(GSE36985)/Homer	GAAASYGAAASY	1e-5	-1.381e+01	0.0000	1072.0	0.97%	908.0	0.84%
BMAL1(bHLH)/Liver-Bmal1-ChIP-Seq(GSE39860)/Homer	GNCACGTG	1e-5	-1.375e+01	0.0000	19125.0	17.29%	18189.6	16.75%
E2F(E2F)/Hela-CellCycle-Expression/Homer	TTSGCGCGAAAA	1e-5	-1.261e+01	0.0000	546.0	0.49%	439.9	0.41%
Fox:Ebox(Forkhead,bHLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer	NNNVCTGWGYAAACASN	1e-5	-1.225e+01	0.0000	9303.0	8.41%	8734.7	8.04%
Zfp809(Zf)/ES-Zfp809-ChIP-Seq(GSE70799)/Homer	GGGGCTYGKCTGGGA	1e-4	-1.123e+01	0.0000	2849.0	2.58%	2584.5	2.38%
n-Myc(bHLH)/mES-nMyc-ChIP-Seq(GSE11431)/Homer	VRCCACGTGG	1e-4	-1.116e+01	0.0000	7244.0	6.55%	6776.9	6.24%
YY1(Zf)/Promoter/Homer	CAAGATGGCGGC	1e-4	-1.069e+01	0.0000	827.0	0.75%	702.4	0.65%
NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer	GGAAATTCCC	1e-4	-1.045e+01	0.0001	553.0	0.50%	455.3	0.42%
PU.1:IRF8(ETS:IRF)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	GGAAGTGAAAST	1e-4	-1.013e+01	0.0001	2013.0	1.82%	1808.8	1.67%
ZNF675(Zf)/HEK293-ZNF675.GFP-ChIP-Seq(GSE58341)/Homer	ARGAGGMCAAAATGW	1e-4	-1.004e+01	0.0001	1406.0	1.27%	1242.0	1.14%
Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer	AGGTGHCAGACA	1e-4	-9.913e+00	0.0001	2016.0	1.82%	1813.9	1.67%
ZNF264(Zf)/HEK293-ZNF264.GFP-ChIP-Seq(GSE58341)/Homer	RGGGCACTAACY	1e-4	-9.836e+00	0.0001	6346.0	5.74%	5938.2	5.47%
ETS:E-box(ETS,bHLH)/HPC7-Scl-ChIP-Seq(GSE22178)/Homer	AGGAARCAGCTG	1e-4	-9.220e+00	0.0002	994.0	0.90%	865.8	0.80%
PAX6(Paired,Homeobox)/Forebrain-Pax6-ChIP-Seq(GSE66961)/Homer	NGTGTTCAVTSAAGCGKAAA	1e-3	-8.808e+00	0.0003	850.0	0.77%	735.1	0.68%
RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer	AAACCACARM	1e-3	-8.540e+00	0.0004	9919.0	8.97%	9407.5	8.66%
SpiB(ETS)/OCILY3-SPIB-ChIP-Seq(GSE56857)/Homer	AAAGRGGAAGTG	1e-3	-8.404e+00	0.0004	2534.0	2.29%	2319.7	2.14%
E2F7(E2F)/Hela-E2F7-ChIP-Seq(GSE32673)/Homer	VDTTTCCCGCCA	1e-3	-8.234e+00	0.0005	1385.0	1.25%	1237.8	1.14%
TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer	YCWGGAATGY	1e-3	-7.711e+00	0.0008	7160.0	6.47%	6763.3	6.23%
NF1:FOXA1(CTF,Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WNTGTTTRYTTTGGCA	1e-3	-7.586e+00	0.0009	424.0	0.38%	353.5	0.33%
GATA(Zf),IR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NAGATWNBNATCTNN	1e-3	-7.268e+00	0.0012	652.0	0.59%	563.1	0.52%
HRE(HSF)/HepG2-HSF1-ChIP-Seq(GSE31477)/Homer	BSTTCTRGAABVTTCYAGAA	1e-3	-7.182e+00	0.0013	1303.0	1.18%	1170.1	1.08%
ZSCAN22(Zf)/HEK293-ZSCAN22.GFP-ChIP-Seq(GSE58341)/Homer	SMCAGTCWGAKGGAGGAGGC	1e-2	-6.906e+00	0.0017	906.0	0.82%	801.8	0.74%
EBNA1(EBV-virus)/Raji-EBNA1-ChIP-Seq(GSE30709)/Homer	GGYAGCAYDTGCTDCCCNNN	1e-2	-6.552e+00	0.0024	172.0	0.16%	133.5	0.12%
HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer	GYCATCMATCAT	1e-2	-6.505e+00	0.0026	911.0	0.82%	809.3	0.75%
HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer	TTTTATKRGG	1e-2	-6.386e+00	0.0029	10249.0	9.26%	9783.1	9.01%
ZBTB33(Zf)/GM12878-ZBTB33-ChIP-Seq(GSE32465)/Homer	GGVTCTCGCGAGAAC	1e-2	-6.026e+00	0.0041	454.0	0.41%	389.4	0.36%
GATA3(Zf),DR8/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATSTNDNNDSAGATAASN	1e-2	-5.968e+00	0.0043	654.0	0.59%	574.0	0.53%
Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer	AGGTGTGAAM	1e-2	-5.913e+00	0.0045	11596.0	10.48%	11104.4	10.23%
CLOCK(bHLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer	GHCACGTG	1e-2	-5.803e+00	0.0050	5496.0	4.97%	5201.3	4.79%
Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	MACAGGAAGT	1e-2	-5.801e+00	0.0050	2852.0	2.58%	2659.0	2.45%
MafF(bZIP)/HepG2-MafF-ChIP-Seq(GSE31477)/Homer	HWWGTCAGCAWWTTT	1e-2	-5.505e+00	0.0067	3165.0	2.86%	2964.7	2.73%
ZNF322(Zf)/HEK293-ZNF322.GFP-ChIP-Seq(GSE58341)/Homer	GAGCCTGGTACTGWGCCTGR	1e-2	-5.397e+00	0.0074	3313.0	2.99%	3108.1	2.86%
ISRE(IRF)/ThioMac-LPS-Expression(GSE23622)/Homer	AGTTTCASTTTC	1e-2	-5.390e+00	0.0074	603.0	0.55%	531.4	0.49%
Atf2(bZIP)/3T3L1-Atf2-ChIP-Seq(GSE56872)/Homer	NRRTGACGTCAT	1e-2	-5.343e+00	0.0077	3516.0	3.18%	3304.7	3.04%
PAX5(Paired,Homeobox),condensed/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GTCACGCTCSCTGM	1e-2	-5.307e+00	0.0080	1115.0	1.01%	1012.3	0.93%
GFX(?)/Promoter/Homer	ATTCTCGCGAGA	1e-2	-5.133e+00	0.0095	156.0	0.14%	124.4	0.11%
IRF1(IRF)/PBMC-IRF1-ChIP-Seq(GSE43036)/Homer	GAAAGTGAAAGT	1e-2	-5.130e+00	0.0095	1436.0	1.30%	1318.1	1.21%
TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer	ACWTCAAAGG	1e-2	-4.982e+00	0.0109	606.0	0.55%	537.5	0.50%
ETS:RUNX(ETS,Runt)/Jurkat-RUNX1-ChIP-Seq(GSE17954)/Homer	RCAGGATGTGGT	1e-2	-4.902e+00	0.0117	960.0	0.87%	870.4	0.80%
Max(bHLH)/K562-Max-ChIP-Seq(GSE31477)/Homer	RCCACGTGGYYN	1e-1	-4.506e+00	0.0174	6682.0	6.04%	6381.7	5.88%
ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer	AGGCCTRG	1e-1	-4.430e+00	0.0186	14905.0	13.47%	14377.9	13.24%
GLI3(Zf)/Limb-GLI3-ChIP-Chip(GSE11077)/Homer	CGTGGGTGGTCC	1e-1	-4.399e+00	0.0191	1101.0	1.00%	1009.5	0.93%
c-Myc(bHLH)/LNCAP-cMyc-ChIP-Seq(Unpublished)/Homer	VCCACGTG	1e-1	-4.398e+00	0.0191	4755.0	4.30%	4519.7	4.16%
NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer	WGGGGATTTCCC	1e-1	-3.934e+00	0.0302	4942.0	4.47%	4712.5	4.34%
ZNF415(Zf)/HEK293-ZNF415.GFP-ChIP-Seq(GSE58341)/Homer	GRTGMTRGAGCC	1e-1	-3.720e+00	0.0372	6014.0	5.44%	5757.7	5.30%
HIF2a(bHLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer	GCACGTACCC	1e-1	-3.668e+00	0.0390	3451.0	3.12%	3277.2	3.02%
REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer	GGMGCTGTCCATGGTGCTGA	1e-1	-3.655e+00	0.0393	118.0	0.11%	96.6	0.09%
ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer	ATTTCCCAGVAKSCY	1e-1	-3.337e+00	0.0537	3699.0	3.34%	3525.5	3.25%
T1ISRE(IRF)/ThioMac-Ifnb-Expression/Homer	ACTTTCGTTTCT	1e-1	-3.331e+00	0.0538	102.0	0.09%	83.2	0.08%
ZNF382(Zf)/HEK293-ZNF382.GFP-ChIP-Seq(GSE58341)/Homer	GNCTGTASTRNTGBCTCHTT	1e-1	-2.805e+00	0.0906	232.0	0.21%	205.4	0.19%
PRDM1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer	ACTTTCACTTTC	1e-1	-2.798e+00	0.0908	5873.0	5.31%	5651.8	5.21%
Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer	NNTGTGGATTSS	1e-1	-2.608e+00	0.1093	5876.0	5.31%	5661.0	5.21%
HRE(HSF)/Striatum-HSF1-ChIP-Seq(GSE38000)/Homer	TTCTAGAABNTTCTA	1e0	-2.268e+00	0.1529	1911.0	1.73%	1822.8	1.68%
ZNF16(Zf)/HEK293-ZNF16.GFP-ChIP-Seq(GSE58341)/Homer	MACCTTCYATGGCTCCCTAKTGCCY	1e0	-2.163e+00	0.1691	94.0	0.08%	81.7	0.08%
Phox2a(Homeobox)/Neuron-Phox2a-ChIP-Seq(GSE31456)/Homer	YTAATYNRATTA	1e0	-2.124e+00	0.1750	3673.0	3.32%	3536.2	3.26%
Pax7(Paired,Homeobox),long/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCHGATTAC	1e0	-1.984e+00	0.2003	222.0	0.20%	202.4	0.19%
Usf2(bHLH)/C2C12-Usf2-ChIP-Seq(GSE36030)/Homer	GTCACGTGGT	1e0	-1.695e+00	0.2662	3397.0	3.07%	3283.1	3.02%
RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	GCTGTGGTTW	1e0	-1.675e+00	0.2703	6795.0	6.14%	6599.1	6.08%
ZNF519(Zf)/HEK293-ZNF519.GFP-ChIP-Seq(GSE58341)/Homer	GAGSCCGAGC	1e0	-1.504e+00	0.3192	2942.0	2.66%	2847.1	2.62%
RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer	NWAACCACADNN	1e0	-1.131e+00	0.4619	7625.0	6.89%	7445.7	6.86%
RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer	SAAACCACAG	1e0	-1.101e+00	0.4736	6390.0	5.78%	6238.8	5.75%
Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer	AGGTGTCA	1e0	-1.040e+00	0.5011	40067.0	36.21%	39263.2	36.16%
E2F1(E2F)/Hela-E2F1-ChIP-Seq(GSE22478)/Homer	CWGGCGGGAA	1e0	-9.340e-01	0.5547	2978.0	2.69%	2908.5	2.68%
c-Myc(bHLH)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	VVCCACGTGG	1e0	-7.745e-01	0.6477	5109.0	4.62%	5007.6	4.61%
ZNF528(Zf)/HEK293-ZNF528.GFP-ChIP-Seq(GSE58341)/Homer	AGAAATGACTTCCCT	1e0	-6.508e-01	0.7298	58.0	0.05%	57.5	0.05%
c-Jun-CRE(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	ATGACGTCATCY	1e0	-6.140e-01	0.7539	3361.0	3.04%	3304.6	3.04%
Mouse_Recombination_Hotspot(Zf)/Testis-DMC1-ChIP-Seq(GSE24438)/Homer	ACTYKNATTCGTGNTACTTC	1e0	-5.897e-01	0.7690	588.0	0.53%	580.8	0.53%
NFkB-p50,p52(RHD)/Monocyte-p50-ChIP-Chip(Schreiber_et_al.)/Homer	GGGGGAATCCCC	1e0	-5.498e-01	0.7969	1134.0	1.02%	1119.1	1.03%
AP-2gamma(AP2)/MCF7-TFAP2C-ChIP-Seq(GSE21234)/Homer	SCCTSAGGSCAW	1e0	-5.375e-01	0.8033	12519.0	11.32%	12308.6	11.34%
Gata4(Zf)/Heart-Gata4-ChIP-Seq(GSE35151)/Homer	NBWGATAAGR	1e0	-4.579e-01	0.8661	9156.0	8.28%	9016.4	8.30%
HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer	RTACGTGC	1e0	-3.576e-01	0.9534	11383.0	10.29%	11223.3	10.34%
Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer	SSCMATWAAA	1e0	-3.416e-01	0.9646	6149.0	5.56%	6076.6	5.60%
HEB(bHLH)/mES-Heb-ChIP-Seq(GSE53233)/Homer	VCAGCTGBNN	1e0	-3.363e-01	0.9656	25650.0	23.18%	25251.4	23.26%
Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer	TGACCTTTNCNT	1e0	-2.799e-01	1.0000	1304.0	1.18%	1304.7	1.20%
HIF-1a(bHLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer	TACGTGCV	1e0	-1.899e-01	1.0000	2522.0	2.28%	2521.2	2.32%
ZNF165(Zf)/WHIM12-ZNF165-ChIP-Seq(GSE65937)/Homer	AAGGKGRCGCAGGCA	1e0	-1.620e-01	1.0000	1557.0	1.41%	1568.1	1.44%
GRHL2(CP2)/HBE-GRHL2-ChIP-Seq(GSE46194)/Homer	AAACYKGTTWDACMRGTTTB	1e0	-1.304e-01	1.0000	3120.0	2.82%	3125.5	2.88%
Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer	GCCACACCCA	1e0	-1.135e-01	1.0000	4649.0	4.20%	4644.4	4.28%
ZNF317(Zf)/HEK293-ZNF317.GFP-ChIP-Seq(GSE58341)/Homer	GTCWGCTGTYYCTCT	1e0	-1.046e-01	1.0000	835.0	0.75%	856.8	0.79%
ZNF692(Zf)/HEK293-ZNF692.GFP-ChIP-Seq(GSE58341)/Homer	GTGGGCCCCA	1e0	-9.850e-02	1.0000	1537.0	1.39%	1559.5	1.44%
RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer	RGGTCADNNAGAGGTCAV	1e0	-8.179e-02	1.0000	193.0	0.17%	209.4	0.19%
GATA3(Zf),DR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATGKDGAGATAAG	1e0	-6.363e-02	1.0000	669.0	0.60%	696.2	0.64%
Gata1(Zf)/K562-GATA1-ChIP-Seq(GSE18829)/Homer	SAGATAAGRV	1e0	-4.144e-02	1.0000	4986.0	4.51%	5012.8	4.62%
ZFP3(Zf)/HEK293-ZFP3.GFP-ChIP-Seq(GSE58341)/Homer	GGGTTTTGAAGGATGARTAGGAGTT	1e0	-2.475e-02	1.0000	53.0	0.05%	68.0	0.06%
TEAD2(TEA)/Py2T-Tead2-ChIP-Seq(GSE55709)/Homer	CCWGGAATGY	1e0	-1.773e-02	1.0000	5363.0	4.85%	5412.8	4.98%
Gata2(Zf)/K562-GATA2-ChIP-Seq(GSE18829)/Homer	BBCTTATCTS	1e0	-1.689e-02	1.0000	5609.0	5.07%	5658.8	5.21%
CEBP:CEBP(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	NTNATGCAAYMNNHTGMAAY	1e0	-1.142e-02	1.0000	1455.0	1.32%	1514.3	1.39%
Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529)/Homer	CYAAAAATAG	1e0	-1.047e-02	1.0000	6802.0	6.15%	6858.1	6.32%
Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer	GTCATGCHTGRCTGS	1e0	-8.768e-03	1.0000	3889.0	3.52%	3961.3	3.65%
DMRT6(DM)/Testis-DMRT6-ChIP-Seq(GSE60440)/Homer	YDGHTACAWTGTADC	1e0	-4.501e-03	1.0000	1606.0	1.45%	1680.1	1.55%
EKLF(Zf)/Erythrocyte-Klf1-ChIP-Seq(GSE20478)/Homer	NWGGGTGTGGCY	1e0	-3.722e-03	1.0000	2085.0	1.88%	2168.0	2.00%
ZNF41(Zf)/HEK293-ZNF41.GFP-ChIP-Seq(GSE58341)/Homer	CCTCATGGTGYCYTWYTCCCTTGTG	1e0	-1.069e-03	1.0000	193.0	0.17%	234.1	0.22%
DMRT1(DM)/Testis-DMRT1-ChIP-Seq(GSE64892)/Homer	TWGHWACAWTGTWDC	1e0	-5.640e-04	1.0000	2033.0	1.84%	2141.6	1.97%
ZNF669(Zf)/HEK293-ZNF669.GFP-ChIP-Seq(GSE58341)/Homer	GARTGGTCATCGCCC	1e0	-5.080e-04	1.0000	604.0	0.55%	675.1	0.62%
GATA(Zf),IR3/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NNNNNBAGATAWYATCTVHN	1e0	-2.500e-04	1.0000	1539.0	1.39%	1647.1	1.52%
ZBTB12(Zf)/HEK293-ZBTB12.GFP-ChIP-Seq(GSE58341)/Homer	NGNTCTAGAACCNGV	1e0	-2.010e-04	1.0000	3534.0	3.19%	3675.4	3.38%
Hnf1(Homeobox)/Liver-Foxa2-Chip-Seq(GSE25694)/Homer	GGTTAAWCATTAA	1e0	-1.840e-04	1.0000	940.0	0.85%	1033.3	0.95%
AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer	ATGCCCTGAGGC	1e0	-1.300e-04	1.0000	9368.0	8.47%	9529.3	8.78%
Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer	DCYAAAAATAGM	1e0	-1.280e-04	1.0000	7242.0	6.55%	7406.6	6.82%
Pax7(Paired,Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCAATTA	1e0	-4.300e-05	1.0000	693.0	0.63%	786.3	0.72%
p53(p53)/Saos-p53-ChIP-Seq(GSE15780)/Homer	RRCATGYCYRGRCATGYYYN	1e0	-2.400e-05	1.0000	676.0	0.61%	772.0	0.71%
p53(p53)/Saos-p53-ChIP-Seq/Homer	RRCATGYCYRGRCATGYYYN	1e0	-2.400e-05	1.0000	676.0	0.61%	772.0	0.71%
PRDM14(Zf)/H1-PRDM14-ChIP-Seq(GSE22767)/Homer	RGGTCTCTAACY	1e0	-1.300e-05	1.0000	2258.0	2.04%	2415.2	2.22%
p53(p53)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	ACATGCCCGGGCAT	1e0	-3.000e-06	1.0000	171.0	0.15%	233.0	0.21%
bHLHE40(bHLH)/HepG2-BHLHE40-ChIP-Seq(GSE31477)/Homer	KCACGTGMCN	1e0	-2.000e-06	1.0000	2879.0	2.60%	3069.6	2.83%
ERE(NR),IR3/MCF7-ERa-ChIP-Seq(Unpublished)/Homer	VAGGTCACNSTGACC	1e0	-2.000e-06	1.0000	2031.0	1.84%	2200.1	2.03%
PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GCAGCCAAGCRTGACH	1e0	-2.000e-06	1.0000	4026.0	3.64%	4239.7	3.90%
CEBP(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	ATTGCGCAAC	1e0	-1.000e-06	1.0000	7467.0	6.75%	7735.7	7.12%
Pax7(Paired,Homeobox),longest/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	NTAATTDGCYAATTANNWWD	1e0	-0.000e+00	1.0000	212.0	0.19%	290.0	0.27%
Atf1(bZIP)/K562-ATF1-ChIP-Seq(GSE31477)/Homer	GATGACGTCA	1e0	-0.000e+00	1.0000	7262.0	6.56%	7551.4	6.95%
GATA3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATAASR	1e0	-0.000e+00	1.0000	14271.0	12.90%	14593.9	13.44%
Atf7(bZIP)/3T3L1-Atf7-ChIP-Seq(GSE56872)/Homer	NGRTGACGTCAY	1e0	-0.000e+00	1.0000	5213.0	4.71%	5504.5	5.07%
p63(p53)/Keratinocyte-p63-ChIP-Seq(GSE17611)/Homer	NNDRCATGYCYNRRCATGYH	1e0	-0.000e+00	1.0000	2974.0	2.69%	3264.2	3.01%
Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer	NYTAATCCYB	1e0	-0.000e+00	1.0000	7690.0	6.95%	8084.5	7.45%
HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer	NCYAATAAAA	1e0	-0.000e+00	1.0000	10116.0	9.14%	10578.2	9.74%
Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer	GYMATAAAAH	1e0	-0.000e+00	1.0000	6046.0	5.46%	6457.7	5.95%
FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer	NYYTGTTTACHN	1e0	-0.000e+00	1.0000	3214.0	2.90%	3605.8	3.32%
Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer	CYTGTTTACWYW	1e0	-0.000e+00	1.0000	6411.0	5.79%	6921.0	6.37%
FOXA1:AR(Forkhead,NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	AGTAAACAAAAAAGAACAND	1e0	0.000e+00	1.0000	414.0	0.37%	710.6	0.65%
Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer	TTRAGTGSYK	1e0	0.000e+00	1.0000	24568.0	22.21%	30367.5	27.97%
CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer	GCTAATCC	1e0	0.000e+00	1.0000	25137.0	22.72%	29146.9	26.84%
RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer	AGGTCAAGGTCA	1e0	0.000e+00	1.0000	635.0	0.57%	1108.9	1.02%
E2A(bHLH)/proBcell-E2A-ChIP-Seq(GSE21978)/Homer	DNRCAGCTGY	1e0	0.000e+00	1.0000	19646.0	17.76%	20435.3	18.82%
E2A(bHLH),near_PU.1/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	NVCACCTGBN	1e0	0.000e+00	1.0000	15335.0	13.86%	19379.5	17.85%
Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer	CAAAGGTCAG	1e0	0.000e+00	1.0000	20208.0	18.26%	23738.3	21.86%
Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer	KTGACCTTGA	1e0	0.000e+00	1.0000	4232.0	3.83%	5684.0	5.23%
FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WAAGTAAACA	1e0	0.000e+00	1.0000	9776.0	8.84%	11638.9	10.72%
FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer	WAAGTAAACA	1e0	0.000e+00	1.0000	7748.0	7.00%	9598.3	8.84%
FoxL2(Forkhead)/Ovary-FoxL2-ChIP-Seq(GSE60858)/Homer	WWTRTAAACAVG	1e0	0.000e+00	1.0000	6535.0	5.91%	7845.4	7.23%
FOXM1(Forkhead)/MCF7-FOXM1-ChIP-Seq(GSE72977)/Homer	TRTTTACTTW	1e0	0.000e+00	1.0000	8296.0	7.50%	10023.8	9.23%
FXR(NR),IR1/Liver-FXR-ChIP-Seq(Chong_et_al.)/Homer	AGGTCANTGACCTB	1e0	0.000e+00	1.0000	3089.0	2.79%	3772.8	3.47%
Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer	MAATCACTGC	1e0	0.000e+00	1.0000	8341.0	7.54%	9523.0	8.77%
GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer	RGGATTAR	1e0	0.000e+00	1.0000	12687.0	11.47%	18412.7	16.96%
HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer	CARRGKBCAAAGTYCA	1e0	0.000e+00	1.0000	3215.0	2.91%	3982.8	3.67%
HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer	NTATYGATCH	1e0	0.000e+00	1.0000	3959.0	3.58%	4676.1	4.31%
Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer	BTCAAGGTCA	1e0	0.000e+00	1.0000	5111.0	4.62%	6172.6	5.68%
LXRE(NR),DR4/RAW-LXRb.biotin-ChIP-Seq(GSE21512)/Homer	RGGTTACTANAGGTCA	1e0	0.000e+00	1.0000	522.0	0.47%	1789.6	1.65%
Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer	RSCACTYRAG	1e0	0.000e+00	1.0000	31507.0	28.48%	34919.1	32.16%
Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer	BTBRAGTGSN	1e0	0.000e+00	1.0000	22508.0	20.34%	25922.6	23.87%
Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer	RRSCACTYAA	1e0	0.000e+00	1.0000	24468.0	22.12%	27393.8	25.23%
Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer	AAGCACTTAA	1e0	0.000e+00	1.0000	25672.0	23.20%	27857.6	25.66%
NPAS2(bHLH)/Liver-NPAS2-ChIP-Seq(GSE39860)/Homer	KCCACGTGAC	1e0	0.000e+00	1.0000	11128.0	10.06%	11970.0	11.02%
Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer	BTCAAGGTCA	1e0	0.000e+00	1.0000	3828.0	3.46%	4354.2	4.01%
Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer	TAATCCCN	1e0	0.000e+00	1.0000	46575.0	42.10%	48138.0	44.33%
PPARE(NR),DR1/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer	TGACCTTTGCCCCA	1e0	0.000e+00	1.0000	8091.0	7.31%	9091.6	8.37%
RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer	AGGTCAAGGTCA	1e0	0.000e+00	1.0000	132.0	0.12%	258.1	0.24%
Reverb(NR),DR2/RAW-Reverba.biotin-ChIP-Seq(GSE45914)/Homer	GTRGGTCASTGGGTCA	1e0	0.000e+00	1.0000	1143.0	1.03%	1522.5	1.40%
RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer	TAGGGCAAAGGTCA	1e0	0.000e+00	1.0000	10072.0	9.10%	10980.0	10.11%
Srebp1a(bHLH)/HepG2-Srebp1a-ChIP-Seq(GSE31477)/Homer	RTCACSCCAY	1e0	0.000e+00	1.0000	2119.0	1.92%	2869.9	2.64%
Srebp2(bHLH)/HepG2-Srebp2-ChIP-Seq(GSE31477)/Homer	CGGTCACSCCAC	1e0	0.000e+00	1.0000	1454.0	1.31%	2284.3	2.10%
TR4(NR),DR1/Hela-TR4-ChIP-Seq(GSE24685)/Homer	GAGGTCAAAGGTCA	1e0	0.000e+00	1.0000	524.0	0.47%	832.0	0.77%
THRa(NR)/C17.2-THRa-ChIP-Seq(GSE38347)/Homer	GGTCANYTGAGGWCA	1e0	0.000e+00	1.0000	3842.0	3.47%	5831.2	5.37%
VDR(NR),DR3/GM10855-VDR+vitD-ChIP-Seq(GSE22484)/Homer	ARAGGTCANWGAGTTCANNN	1e0	0.000e+00	1.0000	1436.0	1.30%	1753.5	1.61%
ZNF136(Zf)/HEK293-ZNF136.GFP-ChIP-Seq(GSE58341)/Homer	YTKGATAHAGTATTCTWGGTNGGCA	1e0	0.000e+00	1.0000	793.0	0.72%	1149.8	1.06%
ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer	WDNCTGGGCA	1e0	0.000e+00	1.0000	15622.0	14.12%	18817.4	17.33%
ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer	AGGCCTAG	1e0	0.000e+00	1.0000	21220.0	19.18%	22006.0	20.27%