Motif Name	Consensus	P-value	Log P-value	q-value (Benjamini)	# of Target Sequences with Motif(of 72040)	% of Target Sequences with Motif	# of Background Sequences with Motif(of 70875)	% of Background Sequences with Motif
CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	AYAGTGCCMYCTRGTGGCCA	1e-4400	-1.013e+04	0.0000	7204.0	10.00%	737.1	1.04%
BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer	CNNBRGCGCCCCCTGSTGGC	1e-2572	-5.925e+03	0.0000	7718.0	10.71%	1667.1	2.36%
RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer	CGGTTGCCATGGCAAC	1e-1061	-2.445e+03	0.0000	2604.0	3.61%	443.0	0.63%
Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer	GTTGCCATGGCAACM	1e-1053	-2.426e+03	0.0000	2709.0	3.76%	486.7	0.69%
X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	GGTTGCCATGGCAA	1e-893	-2.057e+03	0.0000	2543.0	3.53%	507.6	0.72%
Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	KGTTGCCATGGCAA	1e-753	-1.736e+03	0.0000	3508.0	4.87%	1065.9	1.51%
Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer	SCCTAGCAACAG	1e-466	-1.073e+03	0.0000	4196.0	5.82%	1860.6	2.64%
Fra1(bZIP)/BT549-Fra1-ChIP-Seq(GSE46166)/Homer	NNATGASTCATH	1e-357	-8.243e+02	0.0000	4898.0	6.80%	2572.8	3.64%
Fosl2(bZIP)/3T3L1-Fosl2-ChIP-Seq(GSE56872)/Homer	NATGASTCABNN	1e-345	-7.953e+02	0.0000	3258.0	4.52%	1470.2	2.08%
Jun-AP1(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	GATGASTCATCN	1e-335	-7.718e+02	0.0000	2538.0	3.52%	1029.3	1.46%
Atf3(bZIP)/GBM-ATF3-ChIP-Seq(GSE33912)/Homer	DATGASTCATHN	1e-334	-7.704e+02	0.0000	5629.0	7.81%	3170.5	4.49%
AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	VTGACTCATC	1e-317	-7.310e+02	0.0000	6207.0	8.61%	3659.3	5.18%
BATF(bZIP)/Th17-BATF-ChIP-Seq(GSE39756)/Homer	DATGASTCAT	1e-280	-6.448e+02	0.0000	5404.0	7.50%	3167.5	4.49%
Bach2(bZIP)/OCILy7-Bach2-ChIP-Seq(GSE44420)/Homer	TGCTGAGTCA	1e-240	-5.534e+02	0.0000	2034.0	2.82%	870.1	1.23%
SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer	AVCAGCTG	1e-205	-4.721e+02	0.0000	37577.0	52.15%	32802.6	46.46%
Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer	TGTCANYT	1e-165	-3.803e+02	0.0000	24362.0	33.81%	20547.3	29.10%
NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer	YTGCCAAG	1e-120	-2.785e+02	0.0000	14727.0	20.44%	12055.3	17.07%
Bach1(bZIP)/K562-Bach1-ChIP-Seq(GSE31477)/Homer	AWWNTGCTGAGTCAT	1e-118	-2.733e+02	0.0000	614.0	0.85%	199.2	0.28%
NF-E2(bZIP)/K562-NFE2-ChIP-Seq(GSE31477)/Homer	GATGACTCAGCA	1e-116	-2.690e+02	0.0000	672.0	0.93%	233.7	0.33%
Mef2d(MADS)/Retina-Mef2d-ChIP-Seq(GSE61391)/Homer	GCTATTTTTAGC	1e-107	-2.483e+02	0.0000	1854.0	2.57%	1042.9	1.48%
NFY(CCAAT)/Promoter/Homer	RGCCAATSRG	1e-106	-2.456e+02	0.0000	6152.0	8.54%	4543.1	6.43%
Nrf2(bZIP)/Lymphoblast-Nrf2-ChIP-Seq(GSE37589)/Homer	HTGCTGAGTCAT	1e-96	-2.222e+02	0.0000	577.0	0.80%	206.0	0.29%
Sp1(Zf)/Promoter/Homer	GGCCCCGCCCCC	1e-86	-1.986e+02	0.0000	4714.0	6.54%	3445.5	4.88%
MYB(HTH)/ERMYB-Myb-ChIPSeq(GSE22095)/Homer	GGCVGTTR	1e-82	-1.892e+02	0.0000	12609.0	17.50%	10511.2	14.89%
NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer	GCCATCTGTT	1e-80	-1.859e+02	0.0000	7038.0	9.77%	5502.3	7.79%
Tgif1(Homeobox)/mES-Tgif1-ChIP-Seq(GSE55404)/Homer	YTGWCADY	1e-77	-1.795e+02	0.0000	21503.0	29.84%	18863.0	26.71%
NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	ATTTTCCATT	1e-76	-1.770e+02	0.0000	6240.0	8.66%	4831.2	6.84%
MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer	TGCTGACTCA	1e-75	-1.742e+02	0.0000	6163.0	8.55%	4773.7	6.76%
BMYB(HTH)/Hela-BMYB-ChIP-Seq(GSE27030)/Homer	NHAACBGYYV	1e-75	-1.736e+02	0.0000	10400.0	14.43%	8567.7	12.13%
Foxo1(Forkhead)/RAW-Foxo1-ChIP-Seq(Fan_et_al.)/Homer	CTGTTTAC	1e-75	-1.735e+02	0.0000	13794.0	19.14%	11680.9	16.54%
PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer	VAGRACAKNCTGTBC	1e-73	-1.700e+02	0.0000	15029.0	20.86%	12843.7	18.19%
Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer	RCCATMTGTT	1e-73	-1.697e+02	0.0000	14701.0	20.40%	12540.3	17.76%
AMYB(HTH)/Testes-AMYB-ChIP-Seq(GSE44588)/Homer	TGGCAGTTGG	1e-71	-1.651e+02	0.0000	10728.0	14.89%	8905.9	12.61%
Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	RGCCATTAAC	1e-64	-1.484e+02	0.0000	28681.0	39.80%	25935.9	36.73%
RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer	AAYTAGGTCA	1e-63	-1.463e+02	0.0000	974.0	1.35%	528.6	0.75%
PGR(NR)/EndoStromal-PGR-ChIP-Seq(GSE69539)/Homer	AAGAACATWHTGTTC	1e-56	-1.290e+02	0.0000	1595.0	2.21%	1026.0	1.45%
Elk4(ETS)/Hela-Elk4-ChIP-Seq(GSE31477)/Homer	NRYTTCCGGY	1e-54	-1.256e+02	0.0000	5176.0	7.18%	4079.9	5.78%
Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer	VNRVCAGCTGGY	1e-54	-1.253e+02	0.0000	9295.0	12.90%	7792.5	11.04%
Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer	VCAGCTGYTG	1e-52	-1.211e+02	0.0000	9165.0	12.72%	7695.4	10.90%
STAT4(Stat)/CD4-Stat4-ChIP-Seq(GSE22104)/Homer	NYTTCCWGGAAR	1e-51	-1.188e+02	0.0000	6588.0	9.14%	5366.2	7.60%
CRE(bZIP)/Promoter/Homer	CSGTGACGTCAC	1e-50	-1.168e+02	0.0000	1862.0	2.58%	1265.6	1.79%
Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer	TWGTCTGV	1e-50	-1.152e+02	0.0000	21304.0	29.57%	19113.6	27.07%
Bcl6(Zf)/Liver-Bcl6-ChIP-Seq(GSE31578)/Homer	NNNCTTTCCAGGAAA	1e-49	-1.148e+02	0.0000	9387.0	13.03%	7932.8	11.23%
Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	CTGGCAGSCTGCCA	1e-49	-1.142e+02	0.0000	3581.0	4.97%	2723.6	3.86%
Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	HTTTCCCASG	1e-48	-1.120e+02	0.0000	10753.0	14.92%	9207.0	13.04%
Fli1(ETS)/CD8-FLI-ChIP-Seq(GSE20898)/Homer	NRYTTCCGGH	1e-47	-1.086e+02	0.0000	9284.0	12.88%	7871.6	11.15%
Egr1(Zf)/K562-Egr1-ChIP-Seq(GSE32465)/Homer	TGCGTGGGYG	1e-47	-1.085e+02	0.0000	6818.0	9.46%	5621.5	7.96%
Ap4(bHLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer	NAHCAGCTGD	1e-47	-1.083e+02	0.0000	10490.0	14.56%	8985.1	12.73%
Stat3+il21(Stat)/CD4-Stat3-ChIP-Seq(GSE19198)/Homer	SVYTTCCNGGAARB	1e-43	-9.955e+01	0.0000	5110.0	7.09%	4125.2	5.84%
AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer	CCAGGAACAG	1e-43	-9.935e+01	0.0000	27524.0	38.20%	25217.8	35.71%
ARE(NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	RGRACASNSTGTYCYB	1e-41	-9.641e+01	0.0000	1826.0	2.53%	1282.3	1.82%
GRE(NR),IR3/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer	VAGRACAKWCTGTYC	1e-41	-9.542e+01	0.0000	1623.0	2.25%	1117.9	1.58%
Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer	VGCTGWCAVB	1e-41	-9.527e+01	0.0000	12451.0	17.28%	10893.1	15.43%
GFY-Staf(?,Zf)/Promoter/Homer	RACTACAATTCCCAGAAKGC	1e-41	-9.483e+01	0.0000	678.0	0.94%	377.1	0.53%
GRE(NR),IR3/A549-GR-ChIP-Seq(GSE32465)/Homer	NRGVACABNVTGTYCY	1e-40	-9.331e+01	0.0000	1002.0	1.39%	624.5	0.88%
MafK(bZIP)/C2C12-MafK-ChIP-Seq(GSE36030)/Homer	GCTGASTCAGCA	1e-39	-9.053e+01	0.0000	1841.0	2.55%	1309.6	1.85%
Ascl1(bHLH)/NeuralTubes-Ascl1-ChIP-Seq(GSE55840)/Homer	NNVVCAGCTGBN	1e-39	-8.994e+01	0.0000	14065.0	19.52%	12447.0	17.63%
Fox:Ebox(Forkhead,bHLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer	NNNVCTGWGYAAACASN	1e-38	-8.931e+01	0.0000	6244.0	8.67%	5195.5	7.36%
Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer	CTAATKGV	1e-35	-8.282e+01	0.0000	12284.0	17.05%	10825.6	15.33%
GFY(?)/Promoter/Homer	ACTACAATTCCC	1e-35	-8.153e+01	0.0000	776.0	1.08%	469.2	0.66%
ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer	ACAGGAAGTG	1e-34	-8.022e+01	0.0000	12323.0	17.10%	10881.9	15.41%
MyoD(bHLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer	RRCAGCTGYTSY	1e-33	-7.623e+01	0.0000	7301.0	10.13%	6234.4	8.83%
PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer	ADGGYAGYAGCATCT	1e-31	-7.365e+01	0.0000	3746.0	5.20%	3020.0	4.28%
CTCF-SatelliteElement(Zf?)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	TGCAGTTCCMVNWRTGGCCA	1e-30	-7.136e+01	0.0000	223.0	0.31%	89.1	0.13%
Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	CACAGCAGGGGG	1e-30	-7.060e+01	0.0000	5248.0	7.28%	4387.4	6.21%
Elk1(ETS)/Hela-Elk1-ChIP-Seq(GSE31477)/Homer	HACTTCCGGY	1e-29	-6.870e+01	0.0000	5040.0	6.99%	4208.3	5.96%
Egr2(Zf)/Thymocytes-Egr2-ChIP-Seq(GSE34254)/Homer	NGCGTGGGCGGR	1e-29	-6.736e+01	0.0000	1989.0	2.76%	1500.4	2.12%
Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer	ADBTAATTAR	1e-29	-6.735e+01	0.0000	10332.0	14.34%	9111.7	12.90%
Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer	GKTAATGR	1e-29	-6.723e+01	0.0000	16181.0	22.46%	14638.3	20.73%
Klf9(Zf)/GBM-Klf9-ChIP-Seq(GSE62211)/Homer	GCCACRCCCACY	1e-29	-6.706e+01	0.0000	4041.0	5.61%	3313.4	4.69%
Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer	GGGGGGGG	1e-28	-6.520e+01	0.0000	12932.0	17.95%	11575.3	16.39%
Tcf21(bHLH)/ArterySmoothMuscle-Tcf21-ChIP-Seq(GSE61369)/Homer	NAACAGCTGG	1e-28	-6.476e+01	0.0000	8172.0	11.34%	7114.8	10.08%
Etv2(ETS)/ES-ER71-ChIP-Seq(GSE59402)/Homer(0.967)	NNAYTTCCTGHN	1e-27	-6.375e+01	0.0000	7045.0	9.78%	6076.0	8.61%
Stat3(Stat)/mES-Stat3-ChIP-Seq(GSE11431)/Homer	CTTCCGGGAA	1e-27	-6.282e+01	0.0000	3755.0	5.21%	3076.8	4.36%
NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer	CYTGGCABNSTGCCAR	1e-26	-6.208e+01	0.0000	3233.0	4.49%	2612.1	3.70%
TATA-Box(TBP)/Promoter/Homer	CCTTTTAWAGSC	1e-25	-5.969e+01	0.0000	8056.0	11.18%	7042.6	9.97%
STAT6(Stat)/Macrophage-Stat6-ChIP-Seq(GSE38377)/Homer	TTCCKNAGAA	1e-25	-5.890e+01	0.0000	3505.0	4.86%	2870.4	4.07%
EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer	GTCCCCWGGGGA	1e-24	-5.684e+01	0.0000	8704.0	12.08%	7668.8	10.86%
STAT6(Stat)/CD4-Stat6-ChIP-Seq(GSE22104)/Homer	ABTTCYYRRGAA	1e-23	-5.430e+01	0.0000	3357.0	4.66%	2759.8	3.91%
MyoG(bHLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer	AACAGCTG	1e-23	-5.380e+01	0.0000	9017.0	12.51%	7985.4	11.31%
Myf5(bHLH)/GM-Myf5-ChIP-Seq(GSE24852)/Homer	BAACAGCTGT	1e-22	-5.177e+01	0.0000	5898.0	8.19%	5095.8	7.22%
Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer	CVGTSCTCCC	1e-22	-5.152e+01	0.0000	16610.0	23.05%	15204.1	21.53%
JunD(bZIP)/K562-JunD-ChIP-Seq/Homer	ATGACGTCATCN	1e-21	-5.028e+01	0.0000	658.0	0.91%	431.4	0.61%
ZNF189(Zf)/HEK293-ZNF189.GFP-ChIP-Seq(GSE58341)/Homer	TGGAACAGMA	1e-19	-4.540e+01	0.0000	5971.0	8.29%	5207.0	7.37%
ETV1(ETS)/GIST48-ETV1-ChIP-Seq(GSE22441)/Homer	AACCGGAAGT	1e-19	-4.526e+01	0.0000	10618.0	14.74%	9568.7	13.55%
SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer	ASWTCCTGBT	1e-19	-4.393e+01	0.0000	7350.0	10.20%	6504.7	9.21%
KLF10(Zf)/HEK293-KLF10.GFP-ChIP-Seq(GSE58341)/Homer	GGGGGTGTGTCC	1e-18	-4.192e+01	0.0000	4921.0	6.83%	4259.4	6.03%
GABPA(ETS)/Jurkat-GABPa-ChIP-Seq(GSE17954)/Homer	RACCGGAAGT	1e-17	-4.038e+01	0.0000	7013.0	9.73%	6218.0	8.81%
Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer	CTGTCTGG	1e-17	-4.017e+01	0.0000	11911.0	16.53%	10846.3	15.36%
Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer	YCATYAATCA	1e-16	-3.820e+01	0.0000	5557.0	7.71%	4876.2	6.91%
ETS1(ETS)/Jurkat-ETS1-ChIP-Seq(GSE17954)/Homer	ACAGGAAGTG	1e-16	-3.808e+01	0.0000	8121.0	11.27%	7279.4	10.31%
STAT5(Stat)/mCD4+-Stat5-ChIP-Seq(GSE12346)/Homer	RTTTCTNAGAAA	1e-16	-3.727e+01	0.0000	2179.0	3.02%	1783.2	2.53%
CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	DRTGTTGCAA	1e-16	-3.719e+01	0.0000	4819.0	6.69%	4198.8	5.95%
PU.1-IRF(ETS:IRF)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	MGGAAGTGAAAC	1e-16	-3.717e+01	0.0000	9555.0	13.26%	8642.8	12.24%
CHR(?)/Hela-CellCycle-Expression/Homer	SRGTTTCAAA	1e-15	-3.679e+01	0.0000	3786.0	5.25%	3247.9	4.60%
EBF(EBF)/proBcell-EBF-ChIP-Seq(GSE21978)/Homer	DGTCCCYRGGGA	1e-15	-3.571e+01	0.0000	1637.0	2.27%	1307.6	1.85%
ELF1(ETS)/Jurkat-ELF1-ChIP-Seq(SRA014231)/Homer	AVCCGGAAGT	1e-15	-3.546e+01	0.0000	4527.0	6.28%	3940.7	5.58%
Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer	CYTGTTTACWYW	1e-15	-3.524e+01	0.0000	4672.0	6.48%	4076.5	5.77%
Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer	VBSYGTCTGG	1e-14	-3.408e+01	0.0000	12050.0	16.72%	11047.3	15.65%
FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer	NYYTGTTTACHN	1e-14	-3.370e+01	0.0000	2454.0	3.41%	2049.5	2.90%
IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer	ACTGAAACCA	1e-14	-3.235e+01	0.0000	2758.0	3.83%	2333.7	3.31%
STAT1(Stat)/HelaS3-STAT1-ChIP-Seq(GSE12782)/Homer	NATTTCCNGGAAAT	1e-13	-3.026e+01	0.0000	1847.0	2.56%	1519.5	2.15%
Sox9(HMG)/Limb-SOX9-ChIP-Seq(GSE73225)/Homer	AGGVNCCTTTGT	1e-12	-2.948e+01	0.0000	5291.0	7.34%	4699.6	6.66%
ETS(ETS)/Promoter/Homer	AACCGGAAGT	1e-12	-2.781e+01	0.0000	2769.0	3.84%	2371.2	3.36%
YY1(Zf)/Promoter/Homer	CAAGATGGCGGC	1e-11	-2.730e+01	0.0000	691.0	0.96%	513.8	0.73%
Tcfcp2l1(CP2)/mES-Tcfcp2l1-ChIP-Seq(GSE11431)/Homer	NRAACCRGTTYRAACCRGYT	1e-11	-2.721e+01	0.0000	931.0	1.29%	721.0	1.02%
E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer	GGCGGGAARN	1e-11	-2.712e+01	0.0000	5503.0	7.64%	4919.0	6.97%
NRF(NRF)/Promoter/Homer	STGCGCATGCGC	1e-11	-2.669e+01	0.0000	1902.0	2.64%	1587.6	2.25%
GATA:SCL(Zf,bHLH)/Ter119-SCL-ChIP-Seq(GSE18720)/Homer	CRGCTGBNGNSNNSAGATAA	1e-11	-2.612e+01	0.0000	809.0	1.12%	618.1	0.88%
Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer	NNTGTGGATTSS	1e-11	-2.577e+01	0.0000	3695.0	5.13%	3241.0	4.59%
NRF1(NRF)/MCF7-NRF1-ChIP-Seq(Unpublished)/Homer	CTGCGCATGCGC	1e-11	-2.569e+01	0.0000	1875.0	2.60%	1568.6	2.22%
Brachyury(T-box)/Mesoendoderm-Brachyury-ChIP-exo(GSE54963)/Homer	ANTTMRCASBNNNGTGYKAAN	1e-10	-2.529e+01	0.0000	1627.0	2.26%	1346.5	1.91%
E2F4(E2F)/K562-E2F4-ChIP-Seq(GSE31477)/Homer	GGCGGGAAAH	1e-10	-2.524e+01	0.0000	4608.0	6.39%	4097.0	5.80%
E2F(E2F)/Hela-CellCycle-Expression/Homer	TTSGCGCGAAAA	1e-10	-2.495e+01	0.0000	490.0	0.68%	350.5	0.50%
Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer	ASWTCAAAGG	1e-10	-2.381e+01	0.0000	1432.0	1.99%	1178.9	1.67%
EWS:FLI1-fusion(ETS)/SK_N_MC-EWS:FLI1-ChIP-Seq(SRA014231)/Homer	VACAGGAAAT	1e-10	-2.325e+01	0.0000	4260.0	5.91%	3789.7	5.37%
CArG(MADS)/PUER-Srf-ChIP-Seq(Sullivan_et_al.)/Homer	CCATATATGGNM	1e-9	-2.294e+01	0.0000	1716.0	2.38%	1439.6	2.04%
RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer	AAACCACARM	1e-9	-2.215e+01	0.0000	6447.0	8.95%	5860.5	8.30%
Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer	GGCCATAAATCA	1e-9	-2.195e+01	0.0000	2841.0	3.94%	2478.4	3.51%
Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer	TAATTAGN	1e-9	-2.074e+01	0.0000	6220.0	8.63%	5661.8	8.02%
RBPJ:Ebox(?,bHLH)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	GGGRAARRGRMCAGMTG	1e-8	-2.004e+01	0.0000	2349.0	3.26%	2037.6	2.89%
Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer	SCTGTCAVTCAV	1e-8	-1.990e+01	0.0000	1533.0	2.13%	1290.8	1.83%
Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer	GGTGYTGACAGS	1e-8	-1.947e+01	0.0000	1472.0	2.04%	1237.8	1.75%
HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer	GGCCATAAATCA	1e-8	-1.935e+01	0.0000	3764.0	5.22%	3360.2	4.76%
Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer	MTGATGCAAT	1e-8	-1.896e+01	0.0000	1840.0	2.55%	1576.9	2.23%
Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer	SCTGTCAMTCAN	1e-7	-1.837e+01	0.0000	1521.0	2.11%	1288.8	1.83%
PU.1:IRF8(ETS:IRF)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	GGAAGTGAAAST	1e-7	-1.777e+01	0.0000	1241.0	1.72%	1037.7	1.47%
Gata4(Zf)/Heart-Gata4-ChIP-Seq(GSE35151)/Homer	NBWGATAAGR	1e-7	-1.640e+01	0.0000	5856.0	8.13%	5368.1	7.60%
RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	GCTGTGGTTW	1e-6	-1.612e+01	0.0000	4354.0	6.04%	3948.1	5.59%
Oct6(POU,Homeobox)/NPC-Oct6-ChIP-Seq(GSE35496)/Homer	WATGCAAATGAG	1e-6	-1.610e+01	0.0000	2377.0	3.30%	2094.0	2.97%
HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer	TTTTATKRGG	1e-6	-1.602e+01	0.0000	6097.0	8.46%	5602.8	7.94%
EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer	ATTTCCTGTN	1e-6	-1.589e+01	0.0000	4790.0	6.65%	4363.7	6.18%
RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer	SAAACCACAG	1e-6	-1.546e+01	0.0000	4270.0	5.93%	3876.9	5.49%
Lhx1(Homeobox)/EmbryoCarcinoma-Lhx1-ChIP-Seq(GSE70957)/Homer	NNYTAATTAR	1e-6	-1.545e+01	0.0000	6617.0	9.18%	6105.8	8.65%
Tcf4(HMG)/Hct116-Tcf4-ChIP-Seq(SRA012054)/Homer	ASATCAAAGGVA	1e-6	-1.521e+01	0.0000	2561.0	3.55%	2272.3	3.22%
Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer	CCTGCTGAGH	1e-6	-1.487e+01	0.0000	6818.0	9.46%	6305.8	8.93%
KLF14(Zf)/HEK293-KLF14.GFP-ChIP-Seq(GSE58341)/Homer	RGKGGGCGKGGC	1e-6	-1.473e+01	0.0000	17250.0	23.94%	16353.8	23.16%
E-box(bHLH)/Promoter/Homer	SSGGTCACGTGA	1e-6	-1.473e+01	0.0000	578.0	0.80%	458.1	0.65%
ZNF467(Zf)/HEK293-ZNF467.GFP-ChIP-Seq(GSE58341)/Homer	TGGGGAAGGGCM	1e-6	-1.457e+01	0.0000	7027.0	9.75%	6509.2	9.22%
ZNF264(Zf)/HEK293-ZNF264.GFP-ChIP-Seq(GSE58341)/Homer	RGGGCACTAACY	1e-6	-1.443e+01	0.0000	4286.0	5.95%	3903.9	5.53%
Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	TATGCWAATBAV	1e-5	-1.316e+01	0.0000	1737.0	2.41%	1522.1	2.16%
EHF(ETS)/LoVo-EHF-ChIP-Seq(GSE49402)/Homer	AVCAGGAAGT	1e-5	-1.277e+01	0.0000	9286.0	12.89%	8704.9	12.33%
IRF:BATF(IRF:bZIP)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	CTTTCANTATGACTV	1e-5	-1.170e+01	0.0000	684.0	0.95%	566.2	0.80%
MITF(bHLH)/MastCells-MITF-ChIP-Seq(GSE48085)/Homer	RTCATGTGAC	1e-5	-1.160e+01	0.0000	5833.0	8.09%	5413.2	7.67%
Gata1(Zf)/K562-GATA1-ChIP-Seq(GSE18829)/Homer	SAGATAAGRV	1e-4	-1.074e+01	0.0000	3290.0	4.57%	3004.2	4.25%
Gata2(Zf)/K562-GATA2-ChIP-Seq(GSE18829)/Homer	BBCTTATCTS	1e-4	-1.060e+01	0.0001	3693.0	5.13%	3388.0	4.80%
OCT:OCT(POU,Homeobox,IR1)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATWATTCATGA	1e-4	-1.031e+01	0.0001	108.0	0.15%	70.7	0.10%
Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer	SSCMATWAAA	1e-4	-1.017e+01	0.0001	3644.0	5.06%	3348.0	4.74%
NFAT:AP1(RHD,bZIP)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	SARTGGAAAAWRTGAGTCAB	1e-4	-9.561e+00	0.0002	1013.0	1.41%	879.9	1.25%
TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer	ACWTCAAAGG	1e-3	-9.127e+00	0.0002	416.0	0.58%	338.7	0.48%
Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer	TGATTRATGGCY	1e-3	-8.910e+00	0.0003	1009.0	1.40%	880.3	1.25%
Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer	AGGTGHCAGACA	1e-3	-8.874e+00	0.0003	1220.0	1.69%	1076.3	1.52%
PAX3:FKHR-fusion(Paired,Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer	ACCRTGACTAATTNN	1e-3	-8.524e+00	0.0004	1076.0	1.49%	945.9	1.34%
HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer	GYCATCMATCAT	1e-3	-7.884e+00	0.0008	486.0	0.67%	407.6	0.58%
RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer	NWAACCACADNN	1e-3	-7.883e+00	0.0008	4809.0	6.67%	4494.5	6.37%
ELF5(ETS)/T47D-ELF5-ChIP-Seq(GSE30407)/Homer	ACVAGGAAGT	1e-3	-7.585e+00	0.0010	4963.0	6.89%	4647.9	6.58%
Chop(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	ATTGCATCAT	1e-3	-7.561e+00	0.0011	1365.0	1.89%	1223.5	1.73%
IRF2(IRF)/Erythroblas-IRF2-ChIP-Seq(GSE36985)/Homer	GAAASYGAAASY	1e-3	-7.108e+00	0.0017	681.0	0.95%	590.4	0.84%
OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAACAATG	1e-3	-7.028e+00	0.0018	891.0	1.24%	785.4	1.11%
Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer	NYTAATCCYB	1e-2	-6.526e+00	0.0029	5202.0	7.22%	4897.7	6.94%
GFX(?)/Promoter/Homer	ATTCTCGCGAGA	1e-2	-6.104e+00	0.0044	144.0	0.20%	110.0	0.16%
NF1:FOXA1(CTF,Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WNTGTTTRYTTTGGCA	1e-2	-6.072e+00	0.0045	273.0	0.38%	224.7	0.32%
Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer	GKVTCADRTTWC	1e-2	-5.483e+00	0.0081	1398.0	1.94%	1276.7	1.81%
ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer	AGGCCTRG	1e-2	-5.383e+00	0.0089	10645.0	14.77%	10189.4	14.43%
Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer	CCWTTGTYYB	1e-2	-5.325e+00	0.0094	9902.0	13.74%	9471.0	13.41%
E2F7(E2F)/Hela-E2F7-ChIP-Seq(GSE32673)/Homer	VDTTTCCCGCCA	1e-2	-5.279e+00	0.0098	1149.0	1.59%	1043.3	1.48%
Pit1+1bp(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGCATAATTCA	1e-2	-5.209e+00	0.0104	1821.0	2.53%	1681.1	2.38%
TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer	CCWGGAATGY	1e-2	-4.796e+00	0.0157	5624.0	7.80%	5343.6	7.57%
E2F1(E2F)/Hela-E2F1-ChIP-Seq(GSE22478)/Homer	CWGGCGGGAA	1e-2	-4.687e+00	0.0174	2491.0	3.46%	2329.5	3.30%
ZNF675(Zf)/HEK293-ZNF675.GFP-ChIP-Seq(GSE58341)/Homer	ARGAGGMCAAAATGW	1e-1	-4.406e+00	0.0229	786.0	1.09%	711.0	1.01%
Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer	BTCAAGGTCA	1e-1	-4.112e+00	0.0305	2961.0	4.11%	2791.3	3.95%
ZNF382(Zf)/HEK293-ZNF382.GFP-ChIP-Seq(GSE58341)/Homer	GNCTGTASTRNTGBCTCHTT	1e-1	-3.873e+00	0.0386	146.0	0.20%	120.9	0.17%
GRHL2(CP2)/HBE-GRHL2-ChIP-Seq(GSE46194)/Homer	AAACYKGTTWDACMRGTTTB	1e-1	-3.690e+00	0.0461	2023.0	2.81%	1898.9	2.69%
USF1(bHLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer	SGTCACGTGR	1e-1	-3.489e+00	0.0560	2916.0	4.05%	2761.2	3.91%
PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer	GSCTGTCACTCA	1e-1	-3.414e+00	0.0600	526.0	0.73%	475.4	0.67%
Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer	TGACCTTTNCNT	1e-1	-3.226e+00	0.0720	886.0	1.23%	818.1	1.16%
TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer	YCWGGAATGY	1e-1	-3.164e+00	0.0762	4161.0	5.77%	3972.0	5.63%
Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer	TBGCACGCAA	1e-1	-3.107e+00	0.0801	4721.0	6.55%	4516.7	6.40%
ZBTB33(Zf)/GM12878-ZBTB33-ChIP-Seq(GSE32465)/Homer	GGVTCTCGCGAGAAC	1e-1	-3.105e+00	0.0801	423.0	0.59%	381.1	0.54%
GATA(Zf),IR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NAGATWNBNATCTNN	1e-1	-2.740e+00	0.1145	344.0	0.48%	310.6	0.44%
PAX5(Paired,Homeobox),condensed/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GTCACGCTCSCTGM	1e-1	-2.621e+00	0.1281	694.0	0.96%	643.8	0.91%
ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer	ATTTCCCAGVAKSCY	1e-1	-2.541e+00	0.1380	2409.0	3.34%	2294.6	3.25%
Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer	CCATTGTATGCAAAT	1e-1	-2.514e+00	0.1410	725.0	1.01%	674.3	0.95%
ZNF528(Zf)/HEK293-ZNF528.GFP-ChIP-Seq(GSE58341)/Homer	AGAAATGACTTCCCT	1e-1	-2.469e+00	0.1468	40.0	0.06%	31.3	0.04%
Zfp809(Zf)/ES-Zfp809-ChIP-Seq(GSE70799)/Homer	GGGGCTYGKCTGGGA	1e-1	-2.409e+00	0.1550	1972.0	2.74%	1875.8	2.66%
FOXM1(Forkhead)/MCF7-FOXM1-ChIP-Seq(GSE72977)/Homer	TRTTTACTTW	1e-1	-2.392e+00	0.1568	5952.0	8.26%	5736.5	8.12%
PRDM1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer	ACTTTCACTTTC	1e-1	-2.389e+00	0.1568	3585.0	4.98%	3437.5	4.87%
EBNA1(EBV-virus)/Raji-EBNA1-ChIP-Seq(GSE30709)/Homer	GGYAGCAYDTGCTDCCCNNN	1e0	-2.270e+00	0.1754	98.0	0.14%	84.7	0.12%
Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	MACAGGAAGT	1e0	-2.225e+00	0.1825	1776.0	2.46%	1690.7	2.39%
IRF1(IRF)/PBMC-IRF1-ChIP-Seq(GSE43036)/Homer	GAAAGTGAAAGT	1e0	-2.214e+00	0.1835	878.0	1.22%	825.8	1.17%
PU.1(ETS)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	AGAGGAAGTG	1e0	-2.197e+00	0.1856	3154.0	4.38%	3025.8	4.29%
ZNF317(Zf)/HEK293-ZNF317.GFP-ChIP-Seq(GSE58341)/Homer	GTCWGCTGTYYCTCT	1e0	-2.185e+00	0.1870	535.0	0.74%	497.9	0.71%
Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer	BCCATTGTTC	1e0	-2.078e+00	0.2069	4914.0	6.82%	4739.4	6.71%
Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer	CCATTGTTNY	1e0	-2.050e+00	0.2118	9344.0	12.97%	9056.8	12.83%
bZIP:IRF(bZIP,IRF)/Th17-BatF-ChIP-Seq(GSE39756)/Homer	NAGTTTCABTHTGACTNW	1e0	-2.026e+00	0.2157	2631.0	3.65%	2523.1	3.57%
Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer	GTCATGCHTGRCTGS	1e0	-1.897e+00	0.2441	2697.0	3.74%	2591.3	3.67%
KLF5(Zf)/LoVo-KLF5-ChIP-Seq(GSE49402)/Homer	DGGGYGKGGC	1e0	-1.857e+00	0.2529	12494.0	17.34%	12142.6	17.20%
FoxL2(Forkhead)/Ovary-FoxL2-ChIP-Seq(GSE60858)/Homer	WWTRTAAACAVG	1e0	-1.838e+00	0.2565	4648.0	6.45%	4490.9	6.36%
NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer	GGAAATTCCC	1e0	-1.819e+00	0.2601	327.0	0.45%	303.8	0.43%
ETS:RUNX(ETS,Runt)/Jurkat-RUNX1-ChIP-Seq(GSE17954)/Homer	RCAGGATGTGGT	1e0	-1.797e+00	0.2645	644.0	0.89%	608.0	0.86%
ISRE(IRF)/ThioMac-LPS-Expression(GSE23622)/Homer	AGTTTCASTTTC	1e0	-1.788e+00	0.2655	379.0	0.53%	353.9	0.50%
Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGMATATDC	1e0	-1.772e+00	0.2685	5487.0	7.61%	5310.9	7.52%
NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer	WGGGGATTTCCC	1e0	-1.698e+00	0.2876	3148.0	4.37%	3036.8	4.30%
ZNF415(Zf)/HEK293-ZNF415.GFP-ChIP-Seq(GSE58341)/Homer	GRTGMTRGAGCC	1e0	-1.673e+00	0.2935	4307.0	5.98%	4165.4	5.90%
Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATATTC	1e0	-1.648e+00	0.2994	523.0	0.73%	494.0	0.70%
ZBTB18(Zf)/HEK293-ZBTB18.GFP-ChIP-Seq(GSE58341)/Homer	AACATCTGGA	1e0	-1.490e+00	0.3488	3453.0	4.79%	3341.7	4.73%
Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer	CCWTTGTY	1e0	-1.325e+00	0.4096	10389.0	14.42%	10122.1	14.34%
ZNF16(Zf)/HEK293-ZNF16.GFP-ChIP-Seq(GSE58341)/Homer	MACCTTCYATGGCTCCCTAKTGCCY	1e0	-1.273e+00	0.4295	63.0	0.09%	57.3	0.08%
Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer	ATTAACACCT	1e0	-1.214e+00	0.4534	14032.0	19.47%	13694.2	19.39%
CEBP:CEBP(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	NTNATGCAAYMNNHTGMAAY	1e0	-1.168e+00	0.4725	945.0	1.31%	911.8	1.29%
FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WAAGTAAACA	1e0	-1.143e+00	0.4821	6878.0	9.55%	6703.8	9.49%
GATA3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATAASR	1e0	-1.126e+00	0.4880	8822.0	12.24%	8605.1	12.19%
ETS:E-box(ETS,bHLH)/HPC7-Scl-ChIP-Seq(GSE22178)/Homer	AGGAARCAGCTG	1e0	-1.020e+00	0.5403	568.0	0.79%	549.0	0.78%
ZNF669(Zf)/HEK293-ZNF669.GFP-ChIP-Seq(GSE58341)/Homer	GARTGGTCATCGCCC	1e0	-9.388e-01	0.5830	447.0	0.62%	432.9	0.61%
PRDM14(Zf)/H1-PRDM14-ChIP-Seq(GSE22767)/Homer	RGGTCTCTAACY	1e0	-8.595e-01	0.6282	1556.0	2.16%	1517.9	2.15%
OCT:OCT(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	ATGAATATTCATGAG	1e0	-8.225e-01	0.6488	38.0	0.05%	36.9	0.05%
Atf2(bZIP)/3T3L1-Atf2-ChIP-Seq(GSE56872)/Homer	NRRTGACGTCAT	1e0	-7.799e-01	0.6739	2186.0	3.03%	2137.5	3.03%
CLOCK(bHLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer	GHCACGTG	1e0	-7.262e-01	0.7079	3303.0	4.58%	3234.4	4.58%
PAX6(Paired,Homeobox)/Forebrain-Pax6-ChIP-Seq(GSE66961)/Homer	NGTGTTCAVTSAAGCGKAAA	1e0	-6.969e-01	0.7256	476.0	0.66%	466.1	0.66%
T1ISRE(IRF)/ThioMac-Ifnb-Expression/Homer	ACTTTCGTTTCT	1e0	-6.312e-01	0.7714	65.0	0.09%	64.9	0.09%
Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAW	1e0	-6.159e-01	0.7797	2617.0	3.63%	2569.9	3.64%
HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer	NTATYGATCH	1e0	-5.869e-01	0.7990	2616.0	3.63%	2570.9	3.64%
HRE(HSF)/HepG2-HSF1-ChIP-Seq(GSE31477)/Homer	BSTTCTRGAABVTTCYAGAA	1e0	-5.343e-01	0.8384	775.0	1.08%	765.9	1.08%
Pax7(Paired,Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCAATTA	1e0	-5.239e-01	0.8434	414.0	0.57%	410.5	0.58%
SpiB(ETS)/OCILY3-SPIB-ChIP-Seq(GSE56857)/Homer	AAAGRGGAAGTG	1e0	-4.700e-01	0.8861	1469.0	2.04%	1451.8	2.06%
Phox2a(Homeobox)/Neuron-Phox2a-ChIP-Seq(GSE31456)/Homer	YTAATYNRATTA	1e0	-4.109e-01	0.9359	1980.0	2.75%	1958.9	2.77%
Pax7(Paired,Homeobox),long/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCHGATTAC	1e0	-3.537e-01	0.9867	112.0	0.16%	115.7	0.16%
FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer	WAAGTAAACA	1e0	-3.498e-01	0.9867	5602.0	7.77%	5528.0	7.83%
ZSCAN22(Zf)/HEK293-ZSCAN22.GFP-ChIP-Seq(GSE58341)/Homer	SMCAGTCWGAKGGAGGAGGC	1e0	-3.454e-01	0.9867	576.0	0.80%	577.7	0.82%
HIF2a(bHLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer	GCACGTACCC	1e0	-3.393e-01	0.9878	2327.0	3.23%	2306.2	3.27%
Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer	YCTTTGTTCC	1e0	-3.299e-01	0.9929	4876.0	6.77%	4816.3	6.82%
DMRT6(DM)/Testis-DMRT6-ChIP-Seq(GSE60440)/Homer	YDGHTACAWTGTADC	1e0	-2.405e-01	1.0000	893.0	1.24%	898.8	1.27%
ZNF519(Zf)/HEK293-ZNF519.GFP-ChIP-Seq(GSE58341)/Homer	GAGSCCGAGC	1e0	-2.390e-01	1.0000	2258.0	3.13%	2249.6	3.19%
RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer	RGGTCADNNAGAGGTCAV	1e0	-1.797e-01	1.0000	119.0	0.17%	127.4	0.18%
DMRT1(DM)/Testis-DMRT1-ChIP-Seq(GSE64892)/Homer	TWGHWACAWTGTWDC	1e0	-1.552e-01	1.0000	1140.0	1.58%	1152.1	1.63%
Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer	BTCAAGGTCA	1e0	-8.053e-02	1.0000	3951.0	5.48%	3957.3	5.60%
c-Myc(bHLH)/LNCAP-cMyc-ChIP-Seq(Unpublished)/Homer	VCCACGTG	1e0	-6.184e-02	1.0000	3238.0	4.49%	3258.7	4.62%
AP-2gamma(AP2)/MCF7-TFAP2C-ChIP-Seq(GSE21234)/Homer	SCCTSAGGSCAW	1e0	-5.779e-02	1.0000	9246.0	12.83%	9200.1	13.03%
PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GCAGCCAAGCRTGACH	1e0	-5.737e-02	1.0000	2802.0	3.89%	2827.2	4.00%
HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer	NCYAATAAAA	1e0	-5.304e-02	1.0000	5737.0	7.96%	5738.9	8.13%
REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer	GGMGCTGTCCATGGTGCTGA	1e0	-3.985e-02	1.0000	62.0	0.09%	75.5	0.11%
ERE(NR),IR3/MCF7-ERa-ChIP-Seq(Unpublished)/Homer	VAGGTCACNSTGACC	1e0	-3.438e-02	1.0000	1429.0	1.98%	1468.1	2.08%
GATA3(Zf),DR8/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATSTNDNNDSAGATAASN	1e0	-3.088e-02	1.0000	315.0	0.44%	342.8	0.49%
n-Myc(bHLH)/mES-nMyc-ChIP-Seq(GSE11431)/Homer	VRCCACGTGG	1e0	-2.622e-02	1.0000	4506.0	6.25%	4540.6	6.43%
HRE(HSF)/Striatum-HSF1-ChIP-Seq(GSE38000)/Homer	TTCTAGAABNTTCTA	1e0	-2.408e-02	1.0000	1025.0	1.42%	1068.0	1.51%
Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer	ATATGCAAAT	1e0	-1.408e-02	1.0000	1570.0	2.18%	1624.4	2.30%
GATA(Zf),IR3/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NNNNNBAGATAWYATCTVHN	1e0	-1.269e-02	1.0000	808.0	1.12%	855.7	1.21%
ZBTB12(Zf)/HEK293-ZBTB12.GFP-ChIP-Seq(GSE58341)/Homer	NGNTCTAGAACCNGV	1e0	-1.041e-02	1.0000	2297.0	3.19%	2359.5	3.34%
HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer	RTACGTGC	1e0	-1.031e-02	1.0000	7531.0	10.45%	7567.4	10.72%
MafF(bZIP)/HepG2-MafF-ChIP-Seq(GSE31477)/Homer	HWWGTCAGCAWWTTT	1e0	-9.920e-03	1.0000	1665.0	2.31%	1726.0	2.44%
ZNF165(Zf)/WHIM12-ZNF165-ChIP-Seq(GSE65937)/Homer	AAGGKGRCGCAGGCA	1e0	-9.084e-03	1.0000	1133.0	1.57%	1189.1	1.68%
c-Jun-CRE(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	ATGACGTCATCY	1e0	-5.672e-03	1.0000	2021.0	2.80%	2092.7	2.96%
Mouse_Recombination_Hotspot(Zf)/Testis-DMC1-ChIP-Seq(GSE24438)/Homer	ACTYKNATTCGTGNTACTTC	1e0	-5.469e-03	1.0000	323.0	0.45%	363.1	0.51%
Usf2(bHLH)/C2C12-Usf2-ChIP-Seq(GSE36030)/Homer	GTCACGTGGT	1e0	-4.209e-03	1.0000	2074.0	2.88%	2151.0	3.05%
GATA3(Zf),DR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATGKDGAGATAAG	1e0	-3.679e-03	1.0000	371.0	0.51%	416.2	0.59%
Ptf1a(bHLH)/Panc1-Ptf1a-ChIP-Seq(GSE47459)/Homer	ACAGCTGTTN	1e0	-3.341e-03	1.0000	22233.0	30.85%	22116.7	31.32%
p53(p53)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	ACATGCCCGGGCAT	1e0	-2.247e-03	1.0000	126.0	0.17%	157.0	0.22%
p63(p53)/Keratinocyte-p63-ChIP-Seq(GSE17611)/Homer	NNDRCATGYCYNRRCATGYH	1e0	-1.562e-03	1.0000	2111.0	2.93%	2202.6	3.12%
TEAD2(TEA)/Py2T-Tead2-ChIP-Seq(GSE55709)/Homer	CCWGGAATGY	1e0	-1.401e-03	1.0000	3220.0	4.47%	3320.3	4.70%
Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer	GCCACACCCA	1e0	-1.343e-03	1.0000	3292.0	4.57%	3393.5	4.81%
NFkB-p50,p52(RHD)/Monocyte-p50-ChIP-Chip(Schreiber_et_al.)/Homer	GGGGGAATCCCC	1e0	-7.860e-04	1.0000	745.0	1.03%	817.2	1.16%
HIF-1a(bHLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer	TACGTGCV	1e0	-7.160e-04	1.0000	1705.0	2.37%	1801.2	2.55%
ZNF692(Zf)/HEK293-ZNF692.GFP-ChIP-Seq(GSE58341)/Homer	GTGGGCCCCA	1e0	-5.310e-04	1.0000	1081.0	1.50%	1167.7	1.65%
Mef2b(MADS)/HEK293-Mef2b.V5-ChIP-Seq(GSE67450)/Homer	GCTATTTTTGGM	1e0	-3.720e-04	1.0000	6559.0	9.10%	6685.6	9.47%
Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer	TAATCCCN	1e0	-3.100e-04	1.0000	29981.0	41.61%	29822.8	42.24%
c-Myc(bHLH)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	VVCCACGTGG	1e0	-9.100e-05	1.0000	3166.0	4.39%	3308.8	4.69%
VDR(NR),DR3/GM10855-VDR+vitD-ChIP-Seq(GSE22484)/Homer	ARAGGTCANWGAGTTCANNN	1e0	-6.900e-05	1.0000	988.0	1.37%	1090.0	1.54%
bHLHE40(bHLH)/HepG2-BHLHE40-ChIP-Seq(GSE31477)/Homer	KCACGTGMCN	1e0	-6.600e-05	1.0000	1897.0	2.63%	2024.0	2.87%
Pax7(Paired,Homeobox),longest/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	NTAATTDGCYAATTANNWWD	1e0	-5.800e-05	1.0000	104.0	0.14%	145.6	0.21%
RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer	AGGTCAAGGTCA	1e0	-5.500e-05	1.0000	136.0	0.19%	182.6	0.26%
ZFP3(Zf)/HEK293-ZFP3.GFP-ChIP-Seq(GSE58341)/Homer	GGGTTTTGAAGGATGARTAGGAGTT	1e0	-1.600e-05	1.0000	15.0	0.02%	36.4	0.05%
GLI3(Zf)/Limb-GLI3-ChIP-Chip(GSE11077)/Homer	CGTGGGTGGTCC	1e0	-1.500e-05	1.0000	670.0	0.93%	767.8	1.09%
Max(bHLH)/K562-Max-ChIP-Seq(GSE31477)/Homer	RCCACGTGGYYN	1e0	-9.000e-06	1.0000	3976.0	5.52%	4158.1	5.89%
ZNF322(Zf)/HEK293-ZNF322.GFP-ChIP-Seq(GSE58341)/Homer	GAGCCTGGTACTGWGCCTGR	1e0	-9.000e-06	1.0000	2146.0	2.98%	2300.5	3.26%
ZNF41(Zf)/HEK293-ZNF41.GFP-ChIP-Seq(GSE58341)/Homer	CCTCATGGTGYCYTWYTCCCTTGTG	1e0	-6.000e-06	1.0000	117.0	0.16%	167.5	0.24%
Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer	GYMATAAAAH	1e0	-5.000e-06	1.0000	3339.0	4.63%	3521.5	4.99%
Hnf1(Homeobox)/Liver-Foxa2-Chip-Seq(GSE25694)/Homer	GGTTAAWCATTAA	1e0	-4.000e-06	1.0000	474.0	0.66%	566.5	0.80%
FOXA1:AR(Forkhead,NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	AGTAAACAAAAAAGAACAND	1e0	-2.000e-06	1.0000	319.0	0.44%	399.8	0.57%
p53(p53)/Saos-p53-ChIP-Seq(GSE15780)/Homer	RRCATGYCYRGRCATGYYYN	1e0	-2.000e-06	1.0000	462.0	0.64%	556.4	0.79%
p53(p53)/Saos-p53-ChIP-Seq/Homer	RRCATGYCYRGRCATGYYYN	1e0	-2.000e-06	1.0000	462.0	0.64%	556.4	0.79%
AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer	ATGCCCTGAGGC	1e0	-1.000e-06	1.0000	6937.0	9.63%	7169.3	10.15%
BMAL1(bHLH)/Liver-Bmal1-ChIP-Seq(GSE39860)/Homer	GNCACGTG	1e0	-1.000e-06	1.0000	11167.0	15.50%	11400.7	16.15%
ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer	AGGCCTAG	1e0	-0.000e+00	1.0000	15923.0	22.10%	16143.2	22.86%
Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer	AGGTGTGAAM	1e0	-0.000e+00	1.0000	6375.0	8.85%	6630.8	9.39%
Atf1(bZIP)/K562-ATF1-ChIP-Seq(GSE31477)/Homer	GATGACGTCA	1e0	-0.000e+00	1.0000	4615.0	6.40%	4861.0	6.88%
FXR(NR),IR1/Liver-FXR-ChIP-Seq(Chong_et_al.)/Homer	AGGTCANTGACCTB	1e0	-0.000e+00	1.0000	2255.0	3.13%	2487.5	3.52%
HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer	CARRGKBCAAAGTYCA	1e0	-0.000e+00	1.0000	2292.0	3.18%	2534.5	3.59%
EKLF(Zf)/Erythrocyte-Klf1-ChIP-Seq(GSE20478)/Homer	NWGGGTGTGGCY	1e0	-0.000e+00	1.0000	1278.0	1.77%	1478.2	2.09%
Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer	AAGCACTTAA	1e0	-0.000e+00	1.0000	16815.0	23.34%	17179.4	24.33%
Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer	KTGACCTTGA	1e0	-0.000e+00	1.0000	3387.0	4.70%	3702.3	5.24%
Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer	RRSCACTYAA	1e0	-0.000e+00	1.0000	16544.0	22.96%	16957.1	24.02%
CEBP(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	ATTGCGCAAC	1e0	-0.000e+00	1.0000	4128.0	5.73%	4494.0	6.36%
RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer	TAGGGCAAAGGTCA	1e0	-0.000e+00	1.0000	6840.0	9.49%	7264.5	10.29%
Atf7(bZIP)/3T3L1-Atf7-ChIP-Seq(GSE56872)/Homer	NGRTGACGTCAY	1e0	-0.000e+00	1.0000	3250.0	4.51%	3596.3	5.09%
Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer	RSCACTYRAG	1e0	-0.000e+00	1.0000	21440.0	29.75%	21902.9	31.02%
Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer	AGGTGTCA	1e0	-0.000e+00	1.0000	24549.0	34.07%	25033.6	35.45%
RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer	AGGTCAAGGTCA	1e0	-0.000e+00	1.0000	533.0	0.74%	727.4	1.03%
HEB(bHLH)/mES-Heb-ChIP-Seq(GSE53233)/Homer	VCAGCTGBNN	1e0	-0.000e+00	1.0000	16547.0	22.96%	17124.0	24.25%
Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer	TTRAGTGSYK	1e0	0.000e+00	1.0000	16521.0	22.93%	19090.0	27.04%
CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer	GCTAATCC	1e0	0.000e+00	1.0000	16702.0	23.18%	18112.7	25.65%
E2A(bHLH)/proBcell-E2A-ChIP-Seq(GSE21978)/Homer	DNRCAGCTGY	1e0	0.000e+00	1.0000	12929.0	17.94%	13953.3	19.76%
E2A(bHLH),near_PU.1/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	NVCACCTGBN	1e0	0.000e+00	1.0000	11176.0	15.51%	12983.6	18.39%
Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer	CAAAGGTCAG	1e0	0.000e+00	1.0000	14812.0	20.56%	15835.3	22.43%
Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer	MAATCACTGC	1e0	0.000e+00	1.0000	5156.0	7.16%	5881.7	8.33%
GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer	RGGATTAR	1e0	0.000e+00	1.0000	8636.0	11.98%	11569.6	16.39%
LXRE(NR),DR4/RAW-LXRb.biotin-ChIP-Seq(GSE21512)/Homer	RGGTTACTANAGGTCA	1e0	0.000e+00	1.0000	523.0	0.73%	1214.2	1.72%
Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529)/Homer	CYAAAAATAG	1e0	0.000e+00	1.0000	3796.0	5.27%	4316.0	6.11%
Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer	DCYAAAAATAGM	1e0	0.000e+00	1.0000	4016.0	5.57%	4617.9	6.54%
Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer	BTBRAGTGSN	1e0	0.000e+00	1.0000	15598.0	21.65%	16384.7	23.20%
NPAS2(bHLH)/Liver-NPAS2-ChIP-Seq(GSE39860)/Homer	KCCACGTGAC	1e0	0.000e+00	1.0000	6903.0	9.58%	7608.7	10.78%
PPARE(NR),DR1/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer	TGACCTTTGCCCCA	1e0	0.000e+00	1.0000	5295.0	7.35%	5846.9	8.28%
Reverb(NR),DR2/RAW-Reverba.biotin-ChIP-Seq(GSE45914)/Homer	GTRGGTCASTGGGTCA	1e0	0.000e+00	1.0000	763.0	1.06%	998.1	1.41%
Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer	RAACAATGGN	1e0	0.000e+00	1.0000	6064.0	8.42%	6689.7	9.47%
Srebp1a(bHLH)/HepG2-Srebp1a-ChIP-Seq(GSE31477)/Homer	RTCACSCCAY	1e0	0.000e+00	1.0000	1404.0	1.95%	1757.2	2.49%
Srebp2(bHLH)/HepG2-Srebp2-ChIP-Seq(GSE31477)/Homer	CGGTCACSCCAC	1e0	0.000e+00	1.0000	963.0	1.34%	1367.1	1.94%
TR4(NR),DR1/Hela-TR4-ChIP-Seq(GSE24685)/Homer	GAGGTCAAAGGTCA	1e0	0.000e+00	1.0000	343.0	0.48%	550.8	0.78%
THRa(NR)/C17.2-THRa-ChIP-Seq(GSE38347)/Homer	GGTCANYTGAGGWCA	1e0	0.000e+00	1.0000	3149.0	4.37%	3878.7	5.49%
ZNF136(Zf)/HEK293-ZNF136.GFP-ChIP-Seq(GSE58341)/Homer	YTKGATAHAGTATTCTWGGTNGGCA	1e0	0.000e+00	1.0000	492.0	0.68%	714.5	1.01%
ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer	WDNCTGGGCA	1e0	0.000e+00	1.0000	11270.0	15.64%	12659.3	17.93%