Information for 11-GCMAATCG (Motif 9)


Reverse Opposite:

p-value:1e-287
log p-value:-6.631e+02
Information Content per bp:1.534
Number of Target Sequences with motif29986.0
Percentage of Target Sequences with motif41.61%
Number of Background Sequences with motif24771.0
Percentage of Background Sequences with motif35.08%
Average Position of motif in Targets99.5 +/- 56.4bp
Average Position of motif in Background99.3 +/- 60.4bp
Strand Bias (log2 ratio + to - strand density)-0.0
Multiplicity (# of sites on avg that occur together)1.27
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

NFY(CCAAT)/Promoter/Homer

Match Rank:1
Score:0.83
Offset:-1
Orientation:forward strand
Alignment:-GCMAATCG-
AGCCAATCGG

POL004.1_CCAAT-box/Jaspar

Match Rank:2
Score:0.79
Offset:-4
Orientation:forward strand
Alignment:----GCMAATCG
ACTAGCCAATCA

NFIC/MA0161.1/Jaspar

Match Rank:3
Score:0.77
Offset:-1
Orientation:reverse strand
Alignment:-GCMAATCG
TGCCAA---

NFYB/MA0502.1/Jaspar

Match Rank:4
Score:0.75
Offset:-6
Orientation:forward strand
Alignment:------GCMAATCG-
AAATGGACCAATCAG

NFIX/MA0671.1/Jaspar

Match Rank:5
Score:0.73
Offset:-3
Orientation:forward strand
Alignment:---GCMAATCG
CGTGCCAAG--

Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer

Match Rank:6
Score:0.71
Offset:-4
Orientation:forward strand
Alignment:----GCMAATCG
ATATGCAAAT--

Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer

Match Rank:7
Score:0.71
Offset:-4
Orientation:reverse strand
Alignment:----GCMAATCG
TTATGCAAAT--

NFIA/MA0670.1/Jaspar

Match Rank:8
Score:0.69
Offset:-3
Orientation:forward strand
Alignment:---GCMAATCG
GGTGCCAAGT-

POU2F2/MA0507.1/Jaspar

Match Rank:9
Score:0.68
Offset:-4
Orientation:reverse strand
Alignment:----GCMAATCG-
ATATGCAAATNNN

Gfi1/MA0038.1/Jaspar

Match Rank:10
Score:0.68
Offset:1
Orientation:forward strand
Alignment:GCMAATCG---
-CAAATCACTG