Information for 5-AGAGAGCGCT (Motif 5)


Reverse Opposite:

p-value:1e-380
log p-value:-8.766e+02
Information Content per bp:1.532
Number of Target Sequences with motif30485.0
Percentage of Target Sequences with motif42.31%
Number of Background Sequences with motif24564.7
Percentage of Background Sequences with motif34.79%
Average Position of motif in Targets99.9 +/- 54.6bp
Average Position of motif in Background100.8 +/- 62.8bp
Strand Bias (log2 ratio + to - strand density)-0.0
Multiplicity (# of sites on avg that occur together)1.23
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0099.1_Zfp691_1/Jaspar

Match Rank:1
Score:0.66
Offset:-2
Orientation:reverse strand
Alignment:--AGAGAGCGCT-----
NNNNTGAGCACTGTNNG

PB0009.1_E2F3_1/Jaspar

Match Rank:2
Score:0.59
Offset:-3
Orientation:forward strand
Alignment:---AGAGAGCGCT--
ATAAGGGCGCGCGAT

PB0008.1_E2F2_1/Jaspar

Match Rank:3
Score:0.58
Offset:-3
Orientation:forward strand
Alignment:---AGAGAGCGCT--
ATAAAGGCGCGCGAT

POL010.1_DCE_S_III/Jaspar

Match Rank:4
Score:0.58
Offset:3
Orientation:forward strand
Alignment:AGAGAGCGCT
---CAGCC--

PB0140.1_Irf6_2/Jaspar

Match Rank:5
Score:0.55
Offset:-5
Orientation:reverse strand
Alignment:-----AGAGAGCGCT
NNNACCGAGAGTNNN

BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer

Match Rank:6
Score:0.54
Offset:-6
Orientation:reverse strand
Alignment:------AGAGAGCGCT----
GCCASCAGGGGGCGCYVNNG

Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:7
Score:0.53
Offset:-1
Orientation:reverse strand
Alignment:-AGAGAGCGCT
TTGAGTGSTT-

POL013.1_MED-1/Jaspar

Match Rank:8
Score:0.53
Offset:1
Orientation:reverse strand
Alignment:AGAGAGCGCT
-CGGAGC---

PB0095.1_Zfp161_1/Jaspar

Match Rank:9
Score:0.53
Offset:-3
Orientation:reverse strand
Alignment:---AGAGAGCGCT---
NCANGCGCGCGCGCCA

CTCF/MA0139.1/Jaspar

Match Rank:10
Score:0.52
Offset:-8
Orientation:forward strand
Alignment:--------AGAGAGCGCT-
TGGCCACCAGGGGGCGCTA