Information for 3-GCTGYCAG (Motif 3)


Reverse Opposite:

p-value:1e-441
log p-value:-1.017e+03
Information Content per bp:1.647
Number of Target Sequences with motif35149.0
Percentage of Target Sequences with motif48.78%
Number of Background Sequences with motif28582.7
Percentage of Background Sequences with motif40.48%
Average Position of motif in Targets100.6 +/- 55.1bp
Average Position of motif in Background100.8 +/- 62.9bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.33
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer

Match Rank:1
Score:0.87
Offset:-1
Orientation:forward strand
Alignment:-GCTGYCAG-
VGCTGWCAVB

Tgif1(Homeobox)/mES-Tgif1-ChIP-Seq(GSE55404)/Homer

Match Rank:2
Score:0.81
Offset:0
Orientation:reverse strand
Alignment:GCTGYCAG
RHTGWCAR

MEIS2/MA0774.1/Jaspar

Match Rank:3
Score:0.80
Offset:0
Orientation:reverse strand
Alignment:GCTGYCAG
GCTGTCAA

Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer

Match Rank:4
Score:0.79
Offset:2
Orientation:forward strand
Alignment:GCTGYCAG--
--TGTCANYT

Myb/MA0100.2/Jaspar

Match Rank:5
Score:0.79
Offset:-3
Orientation:forward strand
Alignment:---GCTGYCAG
CCAACTGCCA-

MEIS1/MA0498.2/Jaspar

Match Rank:6
Score:0.78
Offset:1
Orientation:reverse strand
Alignment:GCTGYCAG
-NTGTCAN

PH0169.1_Tgif1/Jaspar

Match Rank:7
Score:0.76
Offset:-5
Orientation:reverse strand
Alignment:-----GCTGYCAG----
NNNCAGCTGTCAATATN

MEIS3/MA0775.1/Jaspar

Match Rank:8
Score:0.76
Offset:0
Orientation:reverse strand
Alignment:GCTGYCAG
CCTGTCAA

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:9
Score:0.76
Offset:1
Orientation:forward strand
Alignment:GCTGYCAG-
-TTGCCAAG

PH0170.1_Tgif2/Jaspar

Match Rank:10
Score:0.72
Offset:-5
Orientation:forward strand
Alignment:-----GCTGYCAG---
AACTAGCTGTCAATAC