Information for 19-ACTTARCRGACC (Motif 25)


Reverse Opposite:

p-value:1e-58
log p-value:-1.348e+02
Information Content per bp:1.774
Number of Target Sequences with motif80.0
Percentage of Target Sequences with motif0.11%
Number of Background Sequences with motif6.0
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets102.3 +/- 52.5bp
Average Position of motif in Background110.3 +/- 44.3bp
Strand Bias (log2 ratio + to - strand density)-0.2
Multiplicity (# of sites on avg that occur together)1.04
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

NKX3-2/MA0122.2/Jaspar

Match Rank:1
Score:0.60
Offset:-3
Orientation:forward strand
Alignment:---ACTTARCRGACC
ACCACTTAA------

Nkx3-1/MA0124.2/Jaspar

Match Rank:2
Score:0.59
Offset:-3
Orientation:forward strand
Alignment:---ACTTARCRGACC
ACCACTTAA------

ISL2/MA0914.1/Jaspar

Match Rank:3
Score:0.59
Offset:-2
Orientation:forward strand
Alignment:--ACTTARCRGACC
GCACTTAA------

MYB(HTH)/ERMYB-Myb-ChIPSeq(GSE22095)/Homer

Match Rank:4
Score:0.57
Offset:3
Orientation:reverse strand
Alignment:ACTTARCRGACC
---YAACBGCC-

PB0048.1_Nkx3-1_1/Jaspar

Match Rank:5
Score:0.56
Offset:-7
Orientation:forward strand
Alignment:-------ACTTARCRGACC
CTTAACCACTTAAGGAT--

Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer

Match Rank:6
Score:0.55
Offset:-4
Orientation:forward strand
Alignment:----ACTTARCRGACC
AAGCACTTAA------

PH0004.1_Nkx3-2/Jaspar

Match Rank:7
Score:0.55
Offset:-7
Orientation:forward strand
Alignment:-------ACTTARCRGACC
CATAACCACTTAACAAC--

Arx/MA0874.1/Jaspar

Match Rank:8
Score:0.55
Offset:-6
Orientation:reverse strand
Alignment:------ACTTARCRGACC
TNCATTAATTAATGNAC-

PH0003.1_Arx/Jaspar

Match Rank:9
Score:0.55
Offset:-6
Orientation:reverse strand
Alignment:------ACTTARCRGACC
TNCATTAATTAATGNAC-

NKX2-3/MA0672.1/Jaspar

Match Rank:10
Score:0.54
Offset:-3
Orientation:forward strand
Alignment:---ACTTARCRGACC
ACCACTTGAA-----