Information for 22-AAGTAGGTCA (Motif 24)


Reverse Opposite:

p-value:1e-65
log p-value:-1.516e+02
Information Content per bp:1.904
Number of Target Sequences with motif402.0
Percentage of Target Sequences with motif0.56%
Number of Background Sequences with motif145.9
Percentage of Background Sequences with motif0.21%
Average Position of motif in Targets104.4 +/- 54.5bp
Average Position of motif in Background99.2 +/- 58.7bp
Strand Bias (log2 ratio + to - strand density)-0.3
Multiplicity (# of sites on avg that occur together)1.01
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer

Match Rank:1
Score:0.94
Offset:0
Orientation:forward strand
Alignment:AAGTAGGTCA
AAYTAGGTCA

RORA(var.2)/MA0072.1/Jaspar

Match Rank:2
Score:0.94
Offset:-3
Orientation:forward strand
Alignment:---AAGTAGGTCA-
TATAAGTAGGTCAA

RORA/MA0071.1/Jaspar

Match Rank:3
Score:0.83
Offset:0
Orientation:forward strand
Alignment:AAGTAGGTCA
ATCAAGGTCA

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:4
Score:0.76
Offset:4
Orientation:forward strand
Alignment:AAGTAGGTCA
----AGGTCA

NR4A2/MA0160.1/Jaspar

Match Rank:5
Score:0.71
Offset:3
Orientation:forward strand
Alignment:AAGTAGGTCA-
---AAGGTCAC

NR2F1/MA0017.2/Jaspar

Match Rank:6
Score:0.66
Offset:1
Orientation:forward strand
Alignment:AAGTAGGTCA----
-CAAAGGTCAAGGG

Esrrg/MA0643.1/Jaspar

Match Rank:7
Score:0.66
Offset:1
Orientation:forward strand
Alignment:AAGTAGGTCA-
-TCAAGGTCAT

Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer

Match Rank:8
Score:0.66
Offset:1
Orientation:reverse strand
Alignment:AAGTAGGTCA-
-TCAAGGTCAN

PB0049.1_Nr2f2_1/Jaspar

Match Rank:9
Score:0.64
Offset:-2
Orientation:forward strand
Alignment:--AAGTAGGTCA----
TCTCAAAGGTCACGAG

ESR2/MA0258.2/Jaspar

Match Rank:10
Score:0.64
Offset:4
Orientation:forward strand
Alignment:AAGTAGGTCA---------
----AGGTCACCCTGACCT