Information for 4-TKCCATGGHAAC (Motif 2)


Reverse Opposite:

p-value:1e-807
log p-value:-1.860e+03
Information Content per bp:1.740
Number of Target Sequences with motif1860.0
Percentage of Target Sequences with motif2.58%
Number of Background Sequences with motif293.9
Percentage of Background Sequences with motif0.42%
Average Position of motif in Targets100.7 +/- 51.6bp
Average Position of motif in Background95.4 +/- 54.9bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.03
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:1
Score:0.93
Offset:-1
Orientation:reverse strand
Alignment:-TKCCATGGHAAC-
TTGCCATGGCAACN

X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:2
Score:0.93
Offset:-1
Orientation:reverse strand
Alignment:-TKCCATGGHAAC-
TTGCCATGGCAACC

Rfx1/MA0509.1/Jaspar

Match Rank:3
Score:0.90
Offset:-2
Orientation:forward strand
Alignment:--TKCCATGGHAAC
GTTGCCATGGCAAC

Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer

Match Rank:4
Score:0.88
Offset:-3
Orientation:reverse strand
Alignment:---TKCCATGGHAAC
KGTTGCCATGGCAAC

RFX3/MA0798.1/Jaspar

Match Rank:5
Score:0.88
Offset:-3
Orientation:forward strand
Alignment:---TKCCATGGHAAC-
CGTTGCCATGGCAACG

RFX5/MA0510.2/Jaspar

Match Rank:6
Score:0.87
Offset:-3
Orientation:reverse strand
Alignment:---TKCCATGGHAAC-
NGTTGCCATGGCAACG

RFX2/MA0600.2/Jaspar

Match Rank:7
Score:0.87
Offset:-3
Orientation:reverse strand
Alignment:---TKCCATGGHAAC-
CGTTGCCATGGCAACG

RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer

Match Rank:8
Score:0.87
Offset:-2
Orientation:reverse strand
Alignment:--TKCCATGGHAAC--
GTTGCCATGGCAACCG

RFX4/MA0799.1/Jaspar

Match Rank:9
Score:0.85
Offset:-3
Orientation:forward strand
Alignment:---TKCCATGGHAAC-
CGTTGCCATGGCAACG

Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer

Match Rank:10
Score:0.81
Offset:2
Orientation:forward strand
Alignment:TKCCATGGHAAC--
--SCCTAGCAACAG