Information for 19-NAGGCTBTNA (Motif 17)


Reverse Opposite:

p-value:1e-125
log p-value:-2.890e+02
Information Content per bp:1.477
Number of Target Sequences with motif13934.0
Percentage of Target Sequences with motif19.34%
Number of Background Sequences with motif11291.1
Percentage of Background Sequences with motif15.99%
Average Position of motif in Targets99.6 +/- 56.6bp
Average Position of motif in Background99.6 +/- 62.4bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.04
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

POL010.1_DCE_S_III/Jaspar

Match Rank:1
Score:0.72
Offset:2
Orientation:reverse strand
Alignment:NAGGCTBTNA
--NGCTN---

POL009.1_DCE_S_II/Jaspar

Match Rank:2
Score:0.64
Offset:3
Orientation:forward strand
Alignment:NAGGCTBTNA
---GCTGTG-

PH0158.1_Rhox11_2/Jaspar

Match Rank:3
Score:0.64
Offset:-2
Orientation:forward strand
Alignment:--NAGGCTBTNA-----
AGGACGCTGTAAAGGGA

Nr2e3/MA0164.1/Jaspar

Match Rank:4
Score:0.64
Offset:0
Orientation:forward strand
Alignment:NAGGCTBTNA
CAAGCTT---

Rhox11/MA0629.1/Jaspar

Match Rank:5
Score:0.62
Offset:-2
Orientation:forward strand
Alignment:--NAGGCTBTNA-----
AAGACGCTGTAAAGCGA

PH0157.1_Rhox11_1/Jaspar

Match Rank:6
Score:0.62
Offset:-2
Orientation:forward strand
Alignment:--NAGGCTBTNA-----
AAGACGCTGTAAAGCGA

MEIS2/MA0774.1/Jaspar

Match Rank:7
Score:0.61
Offset:3
Orientation:reverse strand
Alignment:NAGGCTBTNA-
---GCTGTCAA

PH0169.1_Tgif1/Jaspar

Match Rank:8
Score:0.59
Offset:-2
Orientation:reverse strand
Alignment:--NAGGCTBTNA-----
NNNCAGCTGTCAATATN

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:9
Score:0.57
Offset:0
Orientation:forward strand
Alignment:NAGGCTBTNA
TWGTCTGV--

Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer

Match Rank:10
Score:0.55
Offset:2
Orientation:forward strand
Alignment:NAGGCTBTNA--
--VGCTGWCAVB