Information for 19-CGGATTTA (Motif 16)


Reverse Opposite:

p-value:1e-168
log p-value:-3.882e+02
Information Content per bp:1.594
Number of Target Sequences with motif17887.0
Percentage of Target Sequences with motif24.82%
Number of Background Sequences with motif14511.2
Percentage of Background Sequences with motif20.55%
Average Position of motif in Targets100.3 +/- 56.8bp
Average Position of motif in Background100.0 +/- 59.6bp
Strand Bias (log2 ratio + to - strand density)-0.0
Multiplicity (# of sites on avg that occur together)1.10
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Hoxc9/MA0485.1/Jaspar

Match Rank:1
Score:0.73
Offset:0
Orientation:reverse strand
Alignment:CGGATTTA-----
NTGATTTATGGCC

HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer

Match Rank:2
Score:0.71
Offset:1
Orientation:reverse strand
Alignment:CGGATTTA-----
-TGATTTATGGCC

Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer

Match Rank:3
Score:0.71
Offset:1
Orientation:reverse strand
Alignment:CGGATTTA-----
-TGATTTATGGCC

Gfi1/MA0038.1/Jaspar

Match Rank:4
Score:0.70
Offset:-2
Orientation:reverse strand
Alignment:--CGGATTTA
CNGTGATTTN

Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer

Match Rank:5
Score:0.69
Offset:0
Orientation:reverse strand
Alignment:CGGATTTA
NGGGATTA

Hoxa9/MA0594.1/Jaspar

Match Rank:6
Score:0.69
Offset:1
Orientation:reverse strand
Alignment:CGGATTTA----
-TGATTTATGGC

SPDEF/MA0686.1/Jaspar

Match Rank:7
Score:0.68
Offset:-3
Orientation:forward strand
Alignment:---CGGATTTA
ACCCGGATGTA

OTX1/MA0711.1/Jaspar

Match Rank:8
Score:0.68
Offset:0
Orientation:reverse strand
Alignment:CGGATTTA
CGGATTAN

Dmbx1/MA0883.1/Jaspar

Match Rank:9
Score:0.67
Offset:-5
Orientation:forward strand
Alignment:-----CGGATTTA----
TGAACCGGATTAATGAA

PH0025.1_Dmbx1/Jaspar

Match Rank:10
Score:0.67
Offset:-5
Orientation:forward strand
Alignment:-----CGGATTTA----
TGAACCGGATTAATGAA