Information for 9-CTCTCTGCAGAG (Motif 12)


Reverse Opposite:

p-value:1e-227
log p-value:-5.241e+02
Information Content per bp:1.706
Number of Target Sequences with motif36561.0
Percentage of Target Sequences with motif50.74%
Number of Background Sequences with motif31596.1
Percentage of Background Sequences with motif44.75%
Average Position of motif in Targets99.7 +/- 54.6bp
Average Position of motif in Background100.9 +/- 61.1bp
Strand Bias (log2 ratio + to - strand density)-0.0
Multiplicity (# of sites on avg that occur together)1.36
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0091.1_Zbtb3_1/Jaspar

Match Rank:1
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:CTCTCTGCAGAG-----
NNNANTGCAGTGCNNTT

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:2
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:CTCTCTGCAGAG
CCCCCTGCTGTG

Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer

Match Rank:3
Score:0.55
Offset:-2
Orientation:forward strand
Alignment:--CTCTCTGCAGAG
AAATCACTGC----

Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer

Match Rank:4
Score:0.54
Offset:1
Orientation:reverse strand
Alignment:CTCTCTGCAGAG
-DCTCAGCAGG-

Fox:Ebox(Forkhead,bHLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer

Match Rank:5
Score:0.54
Offset:-1
Orientation:reverse strand
Alignment:-CTCTCTGCAGAG----
NSTGTTTRCWCAGBNNN

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:6
Score:0.53
Offset:-2
Orientation:forward strand
Alignment:--CTCTCTGCAGAG
VBSYGTCTGG----

SA0002.1_at_AC_acceptor/Jaspar

Match Rank:7
Score:0.52
Offset:-7
Orientation:forward strand
Alignment:-------CTCTCTGCAGAG-
TTTTTTTTTTTTTTCAGGTT

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:8
Score:0.52
Offset:0
Orientation:forward strand
Alignment:CTCTCTGCAGAG
CTGTCTGG----

Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer

Match Rank:9
Score:0.52
Offset:-1
Orientation:reverse strand
Alignment:-CTCTCTGCAGAG
SCTGTCARCACC-

PB0205.1_Zic1_2/Jaspar

Match Rank:10
Score:0.52
Offset:-1
Orientation:forward strand
Alignment:-CTCTCTGCAGAG--
CCACACAGCAGGAGA