Information for 10-GVCAGCCTTT (Motif 8)


Reverse Opposite:

p-value:1e-360
log p-value:-8.307e+02
Information Content per bp:1.645
Number of Target Sequences with motif21904.0
Percentage of Target Sequences with motif26.65%
Number of Background Sequences with motif16783.0
Percentage of Background Sequences with motif20.72%
Average Position of motif in Targets100.2 +/- 54.5bp
Average Position of motif in Background100.2 +/- 62.0bp
Strand Bias (log2 ratio + to - strand density)-0.0
Multiplicity (# of sites on avg that occur together)1.14
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:1
Score:0.66
Offset:1
Orientation:reverse strand
Alignment:GVCAGCCTTT
-BCAGACWA-

PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer

Match Rank:2
Score:0.64
Offset:0
Orientation:forward strand
Alignment:GVCAGCCTTT--
GSCTGTCACTCA

POL009.1_DCE_S_II/Jaspar

Match Rank:3
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:GVCAGCCTTT
CACAGN----

YY2/MA0748.1/Jaspar

Match Rank:4
Score:0.62
Offset:0
Orientation:forward strand
Alignment:GVCAGCCTTT-
GTCCGCCATTA

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:5
Score:0.60
Offset:-4
Orientation:forward strand
Alignment:----GVCAGCCTTT
AGGTGHCAGACA--

PH0141.1_Pknox2/Jaspar

Match Rank:6
Score:0.59
Offset:-4
Orientation:forward strand
Alignment:----GVCAGCCTTT--
AAGCACCTGTCAATAT

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:7
Score:0.59
Offset:-4
Orientation:reverse strand
Alignment:----GVCAGCCTTT
AGGTGNCAGACAG-

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:8
Score:0.58
Offset:1
Orientation:reverse strand
Alignment:GVCAGCCTTT
-CCAGACAG-

Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer

Match Rank:9
Score:0.58
Offset:1
Orientation:forward strand
Alignment:GVCAGCCTTT---
-NCTGTCAATCAN

MEIS2/MA0774.1/Jaspar

Match Rank:10
Score:0.58
Offset:-2
Orientation:forward strand
Alignment:--GVCAGCCTTT
TTGACAGC----