Information for 6-CCAATHGGNG (Motif 6)


Reverse Opposite:

p-value:1e-467
log p-value:-1.076e+03
Information Content per bp:1.546
Number of Target Sequences with motif18087.0
Percentage of Target Sequences with motif22.01%
Number of Background Sequences with motif12825.8
Percentage of Background Sequences with motif15.84%
Average Position of motif in Targets100.5 +/- 54.7bp
Average Position of motif in Background100.4 +/- 60.4bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.11
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

NFY(CCAAT)/Promoter/Homer

Match Rank:1
Score:0.79
Offset:-2
Orientation:forward strand
Alignment:--CCAATHGGNG
AGCCAATCGG--

NFYB/MA0502.1/Jaspar

Match Rank:2
Score:0.74
Offset:-7
Orientation:forward strand
Alignment:-------CCAATHGGNG
AAATGGACCAATCAG--

NFYA/MA0060.2/Jaspar

Match Rank:3
Score:0.70
Offset:-4
Orientation:reverse strand
Alignment:----CCAATHGGNG----
TGGACCAATCAGCACTCT

PH0089.1_Isx/Jaspar

Match Rank:4
Score:0.70
Offset:-4
Orientation:forward strand
Alignment:----CCAATHGGNG--
ACTCCTAATTAGTCGT

POL004.1_CCAAT-box/Jaspar

Match Rank:5
Score:0.67
Offset:-5
Orientation:forward strand
Alignment:-----CCAATHGGNG
ACTAGCCAATCA---

PH0109.1_Nkx1-1/Jaspar

Match Rank:6
Score:0.64
Offset:-4
Orientation:forward strand
Alignment:----CCAATHGGNG---
TGCGCTAATTAGTGGGA

PB0191.1_Tcfap2c_2/Jaspar

Match Rank:7
Score:0.62
Offset:-3
Orientation:reverse strand
Alignment:---CCAATHGGNG-
NTGCCCTTGGGCGN

PH0034.1_Gbx2/Jaspar

Match Rank:8
Score:0.61
Offset:-4
Orientation:forward strand
Alignment:----CCAATHGGNG---
AGCGCTAATTAGCGATT

PH0033.1_Gbx1/Jaspar

Match Rank:9
Score:0.61
Offset:-5
Orientation:forward strand
Alignment:-----CCAATHGGNG--
TGCCACTAATTAGTGTA

PH0098.1_Lhx8/Jaspar

Match Rank:10
Score:0.61
Offset:-4
Orientation:forward strand
Alignment:----CCAATHGGNG---
ACCCCTAATTAGCGGTG