Information for 24-AGTGGAGTCG (Motif 28)


Reverse Opposite:

p-value:1e-19
log p-value:-4.460e+01
Information Content per bp:1.884
Number of Target Sequences with motif193.0
Percentage of Target Sequences with motif0.23%
Number of Background Sequences with motif91.6
Percentage of Background Sequences with motif0.11%
Average Position of motif in Targets99.5 +/- 56.5bp
Average Position of motif in Background103.2 +/- 63.5bp
Strand Bias (log2 ratio + to - strand density)-0.7
Multiplicity (# of sites on avg that occur together)1.47
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

GLI2/MA0734.1/Jaspar

Match Rank:1
Score:0.64
Offset:-1
Orientation:reverse strand
Alignment:-AGTGGAGTCG-
CAGTGTGGTCGC

ZNF354C/MA0130.1/Jaspar

Match Rank:2
Score:0.61
Offset:1
Orientation:reverse strand
Alignment:AGTGGAGTCG
-GTGGAT---

Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer

Match Rank:3
Score:0.60
Offset:-2
Orientation:forward strand
Alignment:--AGTGGAGTCG
NNTGTGGATTSS

Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer

Match Rank:4
Score:0.59
Offset:-3
Orientation:forward strand
Alignment:---AGTGGAGTCG
TTRAGTGSYK---

PB0203.1_Zfp691_2/Jaspar

Match Rank:5
Score:0.59
Offset:-3
Orientation:reverse strand
Alignment:---AGTGGAGTCG----
NTNNNAGGAGTCTCNTN

PB0157.1_Rara_2/Jaspar

Match Rank:6
Score:0.57
Offset:-2
Orientation:forward strand
Alignment:--AGTGGAGTCG----
AGAGCGGGGTCAAGTA

NKX2-8/MA0673.1/Jaspar

Match Rank:7
Score:0.57
Offset:-4
Orientation:reverse strand
Alignment:----AGTGGAGTCG
NTCAAGTGG-----

NKX2-3/MA0672.1/Jaspar

Match Rank:8
Score:0.56
Offset:-4
Orientation:reverse strand
Alignment:----AGTGGAGTCG
NTCAAGTGGN----

FOXH1/MA0479.1/Jaspar

Match Rank:9
Score:0.56
Offset:0
Orientation:reverse strand
Alignment:AGTGGAGTCG-
TGTGGATTNNN

PB0179.1_Sp100_2/Jaspar

Match Rank:10
Score:0.56
Offset:3
Orientation:forward strand
Alignment:AGTGGAGTCG--------
---TCCGTCGCTTAAAAG