Information for 21-TTGTCTGC (Motif 21)


Reverse Opposite:

p-value:1e-108
log p-value:-2.498e+02
Information Content per bp:1.829
Number of Target Sequences with motif8370.0
Percentage of Target Sequences with motif10.18%
Number of Background Sequences with motif6483.5
Percentage of Background Sequences with motif8.00%
Average Position of motif in Targets100.1 +/- 56.9bp
Average Position of motif in Background100.6 +/- 63.4bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.02
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:1
Score:0.77
Offset:0
Orientation:forward strand
Alignment:TTGTCTGC
TWGTCTGV

Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer

Match Rank:2
Score:0.75
Offset:-3
Orientation:forward strand
Alignment:---TTGTCTGC----
CCATTGTATGCAAAT

PB0208.1_Zscan4_2/Jaspar

Match Rank:3
Score:0.75
Offset:-4
Orientation:reverse strand
Alignment:----TTGTCTGC----
NNNNTTGTGTGCTTNN

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:4
Score:0.68
Offset:-2
Orientation:forward strand
Alignment:--TTGTCTGC
VBSYGTCTGG

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:5
Score:0.67
Offset:0
Orientation:forward strand
Alignment:TTGTCTGC
CTGTCTGG

PB0145.1_Mafb_2/Jaspar

Match Rank:6
Score:0.63
Offset:-2
Orientation:reverse strand
Alignment:--TTGTCTGC-----
ANATTTTTGCAANTN

PB0168.1_Sox14_2/Jaspar

Match Rank:7
Score:0.62
Offset:-6
Orientation:reverse strand
Alignment:------TTGTCTGC-
NNNCCATTGTGTNAN

PB0130.1_Gm397_2/Jaspar

Match Rank:8
Score:0.60
Offset:-4
Orientation:reverse strand
Alignment:----TTGTCTGC----
NNGCGTGTGTGCNGCN

PB0166.1_Sox12_2/Jaspar

Match Rank:9
Score:0.59
Offset:-6
Orientation:reverse strand
Alignment:------TTGTCTGC--
ANTCCTTTGTCTNNNN

PB0060.1_Smad3_1/Jaspar

Match Rank:10
Score:0.58
Offset:-4
Orientation:reverse strand
Alignment:----TTGTCTGC-----
NNTNNTGTCTGGNNTNG