Information for 2-VACAAWGVNB (Motif 2)


Reverse Opposite:

p-value:1e-871
log p-value:-2.006e+03
Information Content per bp:1.561
Number of Target Sequences with motif18863.0
Percentage of Target Sequences with motif22.95%
Number of Background Sequences with motif11848.1
Percentage of Background Sequences with motif14.63%
Average Position of motif in Targets100.5 +/- 54.0bp
Average Position of motif in Background99.2 +/- 60.8bp
Strand Bias (log2 ratio + to - strand density)-0.0
Multiplicity (# of sites on avg that occur together)1.18
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer

Match Rank:1
Score:0.90
Offset:-2
Orientation:reverse strand
Alignment:--VACAAWGVNB
VRRACAAWGG--

SOX10/MA0442.1/Jaspar

Match Rank:2
Score:0.89
Offset:1
Orientation:reverse strand
Alignment:VACAAWGVNB
-ACAAAG---

Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer

Match Rank:3
Score:0.89
Offset:-2
Orientation:reverse strand
Alignment:--VACAAWGVNB
RNAACAATGG--

Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer

Match Rank:4
Score:0.89
Offset:0
Orientation:reverse strand
Alignment:VACAAWGVNB
RACAAWGG--

MF0011.1_HMG_class/Jaspar

Match Rank:5
Score:0.87
Offset:0
Orientation:reverse strand
Alignment:VACAAWGVNB
AACAAT----

Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer

Match Rank:6
Score:0.87
Offset:-1
Orientation:forward strand
Alignment:-VACAAWGVNB
RAACAATGGN-

Sox9(HMG)/Limb-SOX9-ChIP-Seq(GSE73225)/Homer

Match Rank:7
Score:0.86
Offset:1
Orientation:reverse strand
Alignment:VACAAWGVNB---
-ACAAAGGNBCCT

Sox17/MA0078.1/Jaspar

Match Rank:8
Score:0.86
Offset:0
Orientation:reverse strand
Alignment:VACAAWGVNB
GACAATGNN-

Sox6/MA0515.1/Jaspar

Match Rank:9
Score:0.86
Offset:-2
Orientation:reverse strand
Alignment:--VACAAWGVNB
AAAACAATGG--

Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer

Match Rank:10
Score:0.86
Offset:-1
Orientation:reverse strand
Alignment:-VACAAWGVNB
GAACAATGGN-