Information for 1-CCACTAGAGGGC (Motif 1)


Reverse Opposite:

p-value:1e-4935
log p-value:-1.136e+04
Information Content per bp:1.765
Number of Target Sequences with motif9290.0
Percentage of Target Sequences with motif11.30%
Number of Background Sequences with motif1180.6
Percentage of Background Sequences with motif1.46%
Average Position of motif in Targets100.0 +/- 48.6bp
Average Position of motif in Background100.4 +/- 58.6bp
Strand Bias (log2 ratio + to - strand density)-0.0
Multiplicity (# of sites on avg that occur together)1.02
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:1
Score:0.91
Offset:-3
Orientation:reverse strand
Alignment:---CCACTAGAGGGC-----
TGGCCACCAGGTGGCACTNT

CTCF/MA0139.1/Jaspar

Match Rank:2
Score:0.90
Offset:-3
Orientation:forward strand
Alignment:---CCACTAGAGGGC----
TGGCCACCAGGGGGCGCTA

BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer

Match Rank:3
Score:0.90
Offset:-1
Orientation:reverse strand
Alignment:-CCACTAGAGGGC-------
GCCASCAGGGGGCGCYVNNG

NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer

Match Rank:4
Score:0.65
Offset:2
Orientation:reverse strand
Alignment:CCACTAGAGGGC
--AACAGATGGC

YY1/MA0095.2/Jaspar

Match Rank:5
Score:0.58
Offset:3
Orientation:forward strand
Alignment:CCACTAGAGGGC---
---CAAGATGGCGGC

YY1(Zf)/Promoter/Homer

Match Rank:6
Score:0.58
Offset:3
Orientation:forward strand
Alignment:CCACTAGAGGGC---
---CAAGATGGCGGC

PB0076.1_Sp4_1/Jaspar

Match Rank:7
Score:0.57
Offset:1
Orientation:reverse strand
Alignment:CCACTAGAGGGC------
-NNNAAGGGGGCGGGNNN

ZNF354C/MA0130.1/Jaspar

Match Rank:8
Score:0.56
Offset:-2
Orientation:forward strand
Alignment:--CCACTAGAGGGC
ATCCAC--------

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:9
Score:0.56
Offset:-1
Orientation:forward strand
Alignment:-CCACTAGAGGGC
CACAGCAGGGGG-

PB0189.1_Tcfap2a_2/Jaspar

Match Rank:10
Score:0.55
Offset:0
Orientation:forward strand
Alignment:CCACTAGAGGGC--
TCACCTCTGGGCAG