Motif Name	Consensus	P-value	Log P-value	q-value (Benjamini)	# of Target Sequences with Motif(of 78551)	% of Target Sequences with Motif	# of Background Sequences with Motif(of 77945)	% of Background Sequences with Motif
CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	AYAGTGCCMYCTRGTGGCCA	1e-2408	-5.547e+03	0.0000	4988.0	6.35%	709.3	0.91%
BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer	CNNBRGCGCCCCCTGSTGGC	1e-1387	-3.196e+03	0.0000	5873.0	7.48%	1701.8	2.18%
NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer	YTGCCAAG	1e-479	-1.105e+03	0.0000	18877.0	24.03%	13574.6	17.40%
NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer	CYTGGCABNSTGCCAR	1e-330	-7.613e+02	0.0000	5376.0	6.84%	3029.1	3.88%
Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer	GTTGCCATGGCAACM	1e-211	-4.871e+02	0.0000	1369.0	1.74%	515.3	0.66%
RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer	CGGTTGCCATGGCAAC	1e-209	-4.816e+02	0.0000	1278.0	1.63%	465.1	0.60%
Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	CTGGCAGSCTGCCA	1e-200	-4.621e+02	0.0000	4914.0	6.26%	3101.4	3.98%
NFY(CCAAT)/Promoter/Homer	RGCCAATSRG	1e-181	-4.169e+02	0.0000	7309.0	9.30%	5157.3	6.61%
Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	KGTTGCCATGGCAA	1e-170	-3.915e+02	0.0000	2320.0	2.95%	1224.3	1.57%
Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer	TAATTAGN	1e-168	-3.882e+02	0.0000	9102.0	11.59%	6766.8	8.68%
Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer	ADBTAATTAR	1e-166	-3.838e+02	0.0000	13611.0	17.33%	10781.6	13.82%
Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer	GKTAATGR	1e-146	-3.380e+02	0.0000	20237.0	25.76%	17062.2	21.88%
Lhx1(Homeobox)/EmbryoCarcinoma-Lhx1-ChIP-Seq(GSE70957)/Homer	NNYTAATTAR	1e-141	-3.252e+02	0.0000	9559.0	12.17%	7348.6	9.42%
X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	GGTTGCCATGGCAA	1e-141	-3.252e+02	0.0000	1329.0	1.69%	604.6	0.78%
Sp1(Zf)/Promoter/Homer	GGCCCCGCCCCC	1e-138	-3.198e+02	0.0000	5364.0	6.83%	3742.0	4.80%
Sox9(HMG)/Limb-SOX9-ChIP-Seq(GSE73225)/Homer	AGGVNCCTTTGT	1e-111	-2.572e+02	0.0000	6903.0	8.79%	5219.2	6.69%
Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer	SCCTAGCAACAG	1e-106	-2.450e+02	0.0000	3152.0	4.01%	2074.5	2.66%
Stat3+il21(Stat)/CD4-Stat3-ChIP-Seq(GSE19198)/Homer	SVYTTCCNGGAARB	1e-96	-2.223e+02	0.0000	5865.0	7.47%	4417.5	5.66%
Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	RGCCATTAAC	1e-96	-2.217e+02	0.0000	32394.0	41.24%	29336.5	37.61%
Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer	TWGTCTGV	1e-95	-2.198e+02	0.0000	23486.0	29.90%	20734.3	26.58%
Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer	CTAATKGV	1e-90	-2.078e+02	0.0000	14936.0	19.01%	12711.1	16.30%
Atf3(bZIP)/GBM-ATF3-ChIP-Seq(GSE33912)/Homer	DATGASTCATHN	1e-86	-1.999e+02	0.0000	4828.0	6.15%	3583.5	4.59%
Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer	CCWTTGTY	1e-84	-1.943e+02	0.0000	13613.0	17.33%	11545.9	14.80%
RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer	AAYTAGGTCA	1e-84	-1.942e+02	0.0000	1222.0	1.56%	659.0	0.84%
Stat3(Stat)/mES-Stat3-ChIP-Seq(GSE11431)/Homer	CTTCCGGGAA	1e-82	-1.891e+02	0.0000	4279.0	5.45%	3141.0	4.03%
Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer	CCWTTGTYYB	1e-78	-1.818e+02	0.0000	12632.0	16.08%	10695.3	13.71%
AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer	CCAGGAACAG	1e-78	-1.813e+02	0.0000	29810.0	37.95%	27087.7	34.73%
Fra1(bZIP)/BT549-Fra1-ChIP-Seq(GSE46166)/Homer	NNATGASTCATH	1e-77	-1.782e+02	0.0000	4003.0	5.10%	2934.4	3.76%
PGR(NR)/EndoStromal-PGR-ChIP-Seq(GSE69539)/Homer	AAGAACATWHTGTTC	1e-74	-1.715e+02	0.0000	1834.0	2.33%	1154.7	1.48%
AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	VTGACTCATC	1e-74	-1.708e+02	0.0000	5356.0	6.82%	4131.0	5.30%
PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer	VAGRACAKNCTGTBC	1e-73	-1.700e+02	0.0000	16236.0	20.67%	14133.9	18.12%
BATF(bZIP)/Th17-BATF-ChIP-Seq(GSE39756)/Homer	DATGASTCAT	1e-73	-1.700e+02	0.0000	4711.0	6.00%	3569.6	4.58%
STAT4(Stat)/CD4-Stat4-ChIP-Seq(GSE22104)/Homer	NYTTCCWGGAAR	1e-70	-1.616e+02	0.0000	7494.0	9.54%	6073.7	7.79%
Oct6(POU,Homeobox)/NPC-Oct6-ChIP-Seq(GSE35496)/Homer	WATGCAAATGAG	1e-70	-1.616e+02	0.0000	3208.0	4.08%	2301.4	2.95%
Elk4(ETS)/Hela-Elk4-ChIP-Seq(GSE31477)/Homer	NRYTTCCGGY	1e-68	-1.576e+02	0.0000	5452.0	6.94%	4260.2	5.46%
GRE(NR),IR3/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer	VAGRACAKWCTGTYC	1e-68	-1.575e+02	0.0000	1860.0	2.37%	1199.3	1.54%
Fosl2(bZIP)/3T3L1-Fosl2-ChIP-Seq(GSE56872)/Homer	NATGASTCABNN	1e-67	-1.560e+02	0.0000	2426.0	3.09%	1661.7	2.13%
Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer	BCCATTGTTC	1e-59	-1.374e+02	0.0000	6762.0	8.61%	5511.7	7.07%
MYB(HTH)/ERMYB-Myb-ChIPSeq(GSE22095)/Homer	GGCVGTTR	1e-59	-1.372e+02	0.0000	13205.0	16.81%	11471.1	14.71%
GFY(?)/Promoter/Homer	ACTACAATTCCC	1e-56	-1.300e+02	0.0000	840.0	1.07%	457.7	0.59%
CRE(bZIP)/Promoter/Homer	CSGTGACGTCAC	1e-56	-1.294e+02	0.0000	1844.0	2.35%	1240.3	1.59%
SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer	AVCAGCTG	1e-54	-1.263e+02	0.0000	36671.0	46.68%	34245.6	43.91%
Bach2(bZIP)/OCILy7-Bach2-ChIP-Seq(GSE44420)/Homer	TGCTGAGTCA	1e-54	-1.253e+02	0.0000	1516.0	1.93%	983.8	1.26%
Bcl6(Zf)/Liver-Bcl6-ChIP-Seq(GSE31578)/Homer	NNNCTTTCCAGGAAA	1e-54	-1.245e+02	0.0000	10250.0	13.05%	8780.4	11.26%
Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer	YCTTTGTTCC	1e-52	-1.202e+02	0.0000	6639.0	8.45%	5474.3	7.02%
Jun-AP1(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	GATGASTCATCN	1e-51	-1.186e+02	0.0000	1786.0	2.27%	1215.6	1.56%
ARE(NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	RGRACASNSTGTYCYB	1e-51	-1.179e+02	0.0000	2025.0	2.58%	1414.7	1.81%
Fli1(ETS)/CD8-FLI-ChIP-Seq(GSE20898)/Homer	NRYTTCCGGH	1e-50	-1.163e+02	0.0000	9605.0	12.23%	8225.9	10.55%
Elk1(ETS)/Hela-Elk1-ChIP-Seq(GSE31477)/Homer	HACTTCCGGY	1e-48	-1.110e+02	0.0000	5430.0	6.91%	4418.9	5.67%
AMYB(HTH)/Testes-AMYB-ChIP-Seq(GSE44588)/Homer	TGGCAGTTGG	1e-48	-1.106e+02	0.0000	11432.0	14.55%	9966.5	12.78%
BMYB(HTH)/Hela-BMYB-ChIP-Seq(GSE27030)/Homer	NHAACBGYYV	1e-47	-1.096e+02	0.0000	10968.0	13.96%	9537.4	12.23%
GFY-Staf(?,Zf)/Promoter/Homer	RACTACAATTCCCAGAAKGC	1e-47	-1.085e+02	0.0000	693.0	0.88%	376.2	0.48%
Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	TATGCWAATBAV	1e-46	-1.074e+02	0.0000	2347.0	2.99%	1711.0	2.19%
Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer	CCATTGTTNY	1e-46	-1.064e+02	0.0000	12111.0	15.42%	10632.6	13.63%
NRF1(NRF)/MCF7-NRF1-ChIP-Seq(Unpublished)/Homer	CTGCGCATGCGC	1e-45	-1.059e+02	0.0000	1899.0	2.42%	1337.1	1.71%
MITF(bHLH)/MastCells-MITF-ChIP-Seq(GSE48085)/Homer	RTCATGTGAC	1e-45	-1.054e+02	0.0000	6848.0	8.72%	5735.2	7.35%
GRE(NR),IR3/A549-GR-ChIP-Seq(GSE32465)/Homer	NRGVACABNVTGTYCY	1e-45	-1.039e+02	0.0000	1110.0	1.41%	699.6	0.90%
MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer	TGCTGACTCA	1e-40	-9.374e+01	0.0000	5882.0	7.49%	4907.3	6.29%
ETS(ETS)/Promoter/Homer	AACCGGAAGT	1e-40	-9.362e+01	0.0000	3173.0	4.04%	2469.9	3.17%
Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer	GGGGGGGG	1e-39	-9.008e+01	0.0000	14553.0	18.53%	13064.8	16.75%
Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	HTTTCCCASG	1e-38	-8.817e+01	0.0000	11841.0	15.07%	10501.6	13.46%
Foxo1(Forkhead)/RAW-Foxo1-ChIP-Seq(Fan_et_al.)/Homer	CTGTTTAC	1e-36	-8.342e+01	0.0000	14840.0	18.89%	13391.3	17.17%
JunD(bZIP)/K562-JunD-ChIP-Seq/Homer	ATGACGTCATCN	1e-35	-8.264e+01	0.0000	680.0	0.87%	400.8	0.51%
Bach1(bZIP)/K562-Bach1-ChIP-Seq(GSE31477)/Homer	AWWNTGCTGAGTCAT	1e-35	-8.230e+01	0.0000	463.0	0.59%	241.4	0.31%
USF1(bHLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer	SGTCACGTGR	1e-35	-8.211e+01	0.0000	3536.0	4.50%	2834.1	3.63%
Klf9(Zf)/GBM-Klf9-ChIP-Seq(GSE62211)/Homer	GCCACRCCCACY	1e-35	-8.206e+01	0.0000	4596.0	5.85%	3790.5	4.86%
Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer	TGTCANYT	1e-33	-7.731e+01	0.0000	24730.0	31.48%	23004.0	29.49%
SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer	ASWTCCTGBT	1e-33	-7.705e+01	0.0000	7693.0	9.79%	6674.3	8.56%
ELF1(ETS)/Jurkat-ELF1-ChIP-Seq(SRA014231)/Homer	AVCCGGAAGT	1e-32	-7.489e+01	0.0000	4896.0	6.23%	4098.7	5.25%
NRF(NRF)/Promoter/Homer	STGCGCATGCGC	1e-32	-7.450e+01	0.0000	1889.0	2.40%	1411.1	1.81%
NF-E2(bZIP)/K562-NFE2-ChIP-Seq(GSE31477)/Homer	GATGACTCAGCA	1e-32	-7.447e+01	0.0000	499.0	0.64%	276.4	0.35%
E-box(bHLH)/Promoter/Homer	SSGGTCACGTGA	1e-31	-7.253e+01	0.0000	790.0	1.01%	501.9	0.64%
ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer	ACAGGAAGTG	1e-31	-7.220e+01	0.0000	12860.0	16.37%	11592.4	14.86%
Nrf2(bZIP)/Lymphoblast-Nrf2-ChIP-Seq(GSE37589)/Homer	HTGCTGAGTCAT	1e-31	-7.160e+01	0.0000	435.0	0.55%	234.0	0.30%
ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer	AGGCCTRG	1e-30	-7.012e+01	0.0000	12736.0	16.21%	11491.2	14.73%
STAT5(Stat)/mCD4+-Stat5-ChIP-Seq(GSE12346)/Homer	RTTTCTNAGAAA	1e-30	-6.937e+01	0.0000	2536.0	3.23%	1994.0	2.56%
NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer	GCCATCTGTT	1e-24	-5.691e+01	0.0000	6616.0	8.42%	5798.5	7.43%
Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer	YCATYAATCA	1e-23	-5.377e+01	0.0000	6292.0	8.01%	5517.0	7.07%
GABPA(ETS)/Jurkat-GABPa-ChIP-Seq(GSE17954)/Homer	RACCGGAAGT	1e-23	-5.368e+01	0.0000	7472.0	9.51%	6626.7	8.50%
Fox:Ebox(Forkhead,bHLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer	NNNVCTGWGYAAACASN	1e-23	-5.359e+01	0.0000	6619.0	8.43%	5824.6	7.47%
STAT1(Stat)/HelaS3-STAT1-ChIP-Seq(GSE12782)/Homer	NATTTCCNGGAAAT	1e-23	-5.341e+01	0.0000	2138.0	2.72%	1700.6	2.18%
CTCF-SatelliteElement(Zf?)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	TGCAGTTCCMVNWRTGGCCA	1e-22	-5.080e+01	0.0000	197.0	0.25%	89.8	0.12%
Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer	SSCMATWAAA	1e-22	-5.076e+01	0.0000	4918.0	6.26%	4254.0	5.45%
CLOCK(bHLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer	GHCACGTG	1e-22	-5.067e+01	0.0000	3842.0	4.89%	3258.5	4.18%
YY1(Zf)/Promoter/Homer	CAAGATGGCGGC	1e-21	-5.055e+01	0.0000	789.0	1.00%	543.7	0.70%
KLF14(Zf)/HEK293-KLF14.GFP-ChIP-Seq(GSE58341)/Homer	RGKGGGCGKGGC	1e-21	-5.025e+01	0.0000	19252.0	24.51%	17971.1	23.04%
ETS1(ETS)/Jurkat-ETS1-ChIP-Seq(GSE17954)/Homer	ACAGGAAGTG	1e-20	-4.757e+01	0.0000	8286.0	10.55%	7445.4	9.55%
EWS:FLI1-fusion(ETS)/SK_N_MC-EWS:FLI1-ChIP-Seq(SRA014231)/Homer	VACAGGAAAT	1e-19	-4.569e+01	0.0000	4504.0	5.73%	3900.3	5.00%
Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer	TGATTRATGGCY	1e-19	-4.553e+01	0.0000	1205.0	1.53%	908.8	1.17%
ETV1(ETS)/GIST48-ETV1-ChIP-Seq(GSE22441)/Homer	AACCGGAAGT	1e-19	-4.509e+01	0.0000	11019.0	14.03%	10076.6	12.92%
Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer	RAACAATGGN	1e-19	-4.508e+01	0.0000	8416.0	10.71%	7590.3	9.73%
Etv2(ETS)/ES-ER71-ChIP-Seq(GSE59402)/Homer(0.967)	NNAYTTCCTGHN	1e-19	-4.383e+01	0.0000	7343.0	9.35%	6582.3	8.44%
ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer	AGGCCTAG	1e-18	-4.349e+01	0.0000	19155.0	24.39%	17960.7	23.03%
Max(bHLH)/K562-Max-ChIP-Seq(GSE31477)/Homer	RCCACGTGGYYN	1e-18	-4.305e+01	0.0000	4624.0	5.89%	4029.2	5.17%
FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer	NYYTGTTTACHN	1e-18	-4.278e+01	0.0000	2983.0	3.80%	2512.9	3.22%
Tcfcp2l1(CP2)/mES-Tcfcp2l1-ChIP-Seq(GSE11431)/Homer	NRAACCRGTTYRAACCRGYT	1e-18	-4.170e+01	0.0000	1078.0	1.37%	810.3	1.04%
KLF10(Zf)/HEK293-KLF10.GFP-ChIP-Seq(GSE58341)/Homer	GGGGGTGTGTCC	1e-17	-3.919e+01	0.0000	4965.0	6.32%	4375.2	5.61%
Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAW	1e-16	-3.874e+01	0.0000	3331.0	4.24%	2855.2	3.66%
Usf2(bHLH)/C2C12-Usf2-ChIP-Seq(GSE36030)/Homer	GTCACGTGGT	1e-16	-3.716e+01	0.0000	2758.0	3.51%	2336.9	3.00%
IRF2(IRF)/Erythroblas-IRF2-ChIP-Seq(GSE36985)/Homer	GAAASYGAAASY	1e-15	-3.615e+01	0.0000	895.0	1.14%	669.3	0.86%
GFX(?)/Promoter/Homer	ATTCTCGCGAGA	1e-15	-3.476e+01	0.0000	181.0	0.23%	93.8	0.12%
IRF1(IRF)/PBMC-IRF1-ChIP-Seq(GSE43036)/Homer	GAAAGTGAAAGT	1e-15	-3.462e+01	0.0000	1140.0	1.45%	888.0	1.14%
PAX6(Paired,Homeobox)/Forebrain-Pax6-ChIP-Seq(GSE66961)/Homer	NGTGTTCAVTSAAGCGKAAA	1e-15	-3.455e+01	0.0000	694.0	0.88%	502.8	0.64%
OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAACAATG	1e-14	-3.366e+01	0.0000	1334.0	1.70%	1062.8	1.36%
Ap4(bHLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer	NAHCAGCTGD	1e-14	-3.361e+01	0.0000	10222.0	13.01%	9433.0	12.09%
Atf2(bZIP)/3T3L1-Atf2-ChIP-Seq(GSE56872)/Homer	NRRTGACGTCAT	1e-14	-3.295e+01	0.0000	2442.0	3.11%	2070.0	2.65%
ZNF189(Zf)/HEK293-ZNF189.GFP-ChIP-Seq(GSE58341)/Homer	TGGAACAGMA	1e-14	-3.274e+01	0.0000	6194.0	7.89%	5588.9	7.17%
IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer	ACTGAAACCA	1e-13	-3.167e+01	0.0000	3152.0	4.01%	2733.9	3.51%
NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	ATTTTCCATT	1e-13	-3.128e+01	0.0000	6447.0	8.21%	5842.2	7.49%
Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	CACAGCAGGGGG	1e-13	-3.079e+01	0.0000	5120.0	6.52%	4587.0	5.88%
TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer	CCWGGAATGY	1e-12	-2.981e+01	0.0000	6449.0	8.21%	5858.3	7.51%
ZNF264(Zf)/HEK293-ZNF264.GFP-ChIP-Seq(GSE58341)/Homer	RGGGCACTAACY	1e-12	-2.918e+01	0.0000	4709.0	5.99%	4212.7	5.40%
n-Myc(bHLH)/mES-nMyc-ChIP-Seq(GSE11431)/Homer	VRCCACGTGG	1e-12	-2.910e+01	0.0000	5036.0	6.41%	4522.9	5.80%
E2F4(E2F)/K562-E2F4-ChIP-Seq(GSE31477)/Homer	GGCGGGAAAH	1e-12	-2.909e+01	0.0000	4686.0	5.97%	4191.4	5.37%
Egr1(Zf)/K562-Egr1-ChIP-Seq(GSE32465)/Homer	TGCGTGGGYG	1e-12	-2.902e+01	0.0000	6571.0	8.37%	5982.8	7.67%
CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	DRTGTTGCAA	1e-12	-2.847e+01	0.0000	5179.0	6.59%	4663.4	5.98%
c-Myc(bHLH)/LNCAP-cMyc-ChIP-Seq(Unpublished)/Homer	VCCACGTG	1e-12	-2.832e+01	0.0000	3530.0	4.49%	3109.4	3.99%
CArG(MADS)/PUER-Srf-ChIP-Seq(Sullivan_et_al.)/Homer	CCATATATGGNM	1e-12	-2.814e+01	0.0000	2010.0	2.56%	1699.2	2.18%
Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer	RCCATMTGTT	1e-12	-2.801e+01	0.0000	14387.0	18.32%	13533.9	17.35%
TATA-Box(TBP)/Promoter/Homer	CCTTTTAWAGSC	1e-11	-2.759e+01	0.0000	8970.0	11.42%	8297.8	10.64%
REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer	GGMGCTGTCCATGGTGCTGA	1e-11	-2.743e+01	0.0000	133.0	0.17%	68.0	0.09%
PU.1:IRF8(ETS:IRF)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	GGAAGTGAAAST	1e-11	-2.685e+01	0.0000	1410.0	1.80%	1159.7	1.49%
STAT6(Stat)/Macrophage-Stat6-ChIP-Seq(GSE38377)/Homer	TTCCKNAGAA	1e-11	-2.653e+01	0.0000	3753.0	4.78%	3332.7	4.27%
Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer	VNRVCAGCTGGY	1e-11	-2.653e+01	0.0000	8776.0	11.17%	8123.0	10.41%
RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer	NWAACCACADNN	1e-11	-2.615e+01	0.0000	5428.0	6.91%	4921.5	6.31%
RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer	AAACCACARM	1e-11	-2.571e+01	0.0000	7089.0	9.02%	6512.1	8.35%
Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer	SCTGTCAVTCAV	1e-10	-2.308e+01	0.0000	1597.0	2.03%	1348.0	1.73%
Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer	CYTGTTTACWYW	1e-9	-2.271e+01	0.0000	5279.0	6.72%	4813.2	6.17%
Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer	NNTGTGGATTSS	1e-9	-2.215e+01	0.0000	4175.0	5.32%	3768.1	4.83%
ZNF467(Zf)/HEK293-ZNF467.GFP-ChIP-Seq(GSE58341)/Homer	TGGGGAAGGGCM	1e-9	-2.125e+01	0.0000	7782.0	9.91%	7231.5	9.27%
Mef2d(MADS)/Retina-Mef2d-ChIP-Seq(GSE61391)/Homer	GCTATTTTTAGC	1e-9	-2.084e+01	0.0000	1492.0	1.90%	1264.6	1.62%
Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer	CCTGCTGAGH	1e-8	-2.068e+01	0.0000	6768.0	8.62%	6262.4	8.03%
ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer	ATTTCCCAGVAKSCY	1e-8	-2.061e+01	0.0000	2889.0	3.68%	2566.8	3.29%
ZNF322(Zf)/HEK293-ZNF322.GFP-ChIP-Seq(GSE58341)/Homer	GAGCCTGGTACTGWGCCTGR	1e-8	-2.043e+01	0.0000	2697.0	3.43%	2387.9	3.06%
STAT6(Stat)/CD4-Stat6-ChIP-Seq(GSE22104)/Homer	ABTTCYYRRGAA	1e-8	-2.019e+01	0.0000	3711.0	4.72%	3346.3	4.29%
EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer	GTCCCCWGGGGA	1e-8	-1.923e+01	0.0000	9445.0	12.02%	8866.1	11.37%
Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer	SCTGTCAMTCAN	1e-8	-1.905e+01	0.0000	1533.0	1.95%	1312.3	1.68%
KLF5(Zf)/LoVo-KLF5-ChIP-Seq(GSE49402)/Homer	DGGGYGKGGC	1e-8	-1.903e+01	0.0000	14091.0	17.94%	13388.9	17.17%
MafK(bZIP)/C2C12-MafK-ChIP-Seq(GSE36030)/Homer	GCTGASTCAGCA	1e-8	-1.866e+01	0.0000	1657.0	2.11%	1429.2	1.83%
OCT:OCT(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	ATGAATATTCATGAG	1e-8	-1.859e+01	0.0000	74.0	0.09%	36.0	0.05%
RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer	SAAACCACAG	1e-8	-1.857e+01	0.0000	4693.0	5.97%	4297.3	5.51%
Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer	CCATTGTATGCAAAT	1e-7	-1.794e+01	0.0000	843.0	1.07%	688.3	0.88%
NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer	GGAAATTCCC	1e-7	-1.772e+01	0.0000	420.0	0.53%	315.6	0.40%
Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer	CTGTCTGG	1e-7	-1.734e+01	0.0000	11967.0	15.23%	11347.5	14.55%
Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer	VCAGCTGYTG	1e-7	-1.732e+01	0.0000	8531.0	10.86%	8009.1	10.27%
BMAL1(bHLH)/Liver-Bmal1-ChIP-Seq(GSE39860)/Homer	GNCACGTG	1e-7	-1.726e+01	0.0000	12331.0	15.70%	11703.1	15.00%
Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer	ASWTCAAAGG	1e-7	-1.694e+01	0.0000	1588.0	2.02%	1376.4	1.76%
PU.1-IRF(ETS:IRF)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	MGGAAGTGAAAC	1e-7	-1.652e+01	0.0000	10393.0	13.23%	9829.2	12.60%
RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	GCTGTGGTTW	1e-6	-1.588e+01	0.0000	4700.0	5.98%	4334.6	5.56%
NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer	WGGGGATTTCCC	1e-6	-1.583e+01	0.0000	3724.0	4.74%	3401.5	4.36%
E2F(E2F)/Hela-CellCycle-Expression/Homer	TTSGCGCGAAAA	1e-6	-1.546e+01	0.0000	476.0	0.61%	371.6	0.48%
ISRE(IRF)/ThioMac-LPS-Expression(GSE23622)/Homer	AGTTTCASTTTC	1e-6	-1.504e+01	0.0000	514.0	0.65%	406.1	0.52%
Tcf21(bHLH)/ArterySmoothMuscle-Tcf21-ChIP-Seq(GSE61369)/Homer	NAACAGCTGG	1e-6	-1.464e+01	0.0000	7926.0	10.09%	7464.7	9.57%
HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer	GGCCATAAATCA	1e-6	-1.432e+01	0.0000	4251.0	5.41%	3922.7	5.03%
Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer	MTGATGCAAT	1e-6	-1.427e+01	0.0000	1875.0	2.39%	1663.2	2.13%
Tcf4(HMG)/Hct116-Tcf4-ChIP-Seq(SRA012054)/Homer	ASATCAAAGGVA	1e-6	-1.425e+01	0.0000	2908.0	3.70%	2640.5	3.39%
E2F7(E2F)/Hela-E2F7-ChIP-Seq(GSE32673)/Homer	VDTTTCCCGCCA	1e-6	-1.410e+01	0.0000	1205.0	1.53%	1039.3	1.33%
EBF(EBF)/proBcell-EBF-ChIP-Seq(GSE21978)/Homer	DGTCCCYRGGGA	1e-5	-1.354e+01	0.0000	1707.0	2.17%	1512.0	1.94%
c-Jun-CRE(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	ATGACGTCATCY	1e-5	-1.342e+01	0.0000	2282.0	2.91%	2054.4	2.63%
E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer	GGCGGGAARN	1e-5	-1.327e+01	0.0000	5626.0	7.16%	5259.1	6.74%
HRE(HSF)/HepG2-HSF1-ChIP-Seq(GSE31477)/Homer	BSTTCTRGAABVTTCYAGAA	1e-5	-1.321e+01	0.0000	988.0	1.26%	844.0	1.08%
Pit1+1bp(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGCATAATTCA	1e-5	-1.312e+01	0.0000	2295.0	2.92%	2069.9	2.65%
Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer	GKVTCADRTTWC	1e-5	-1.308e+01	0.0000	1555.0	1.98%	1372.8	1.76%
EHF(ETS)/LoVo-EHF-ChIP-Seq(GSE49402)/Homer	AVCAGGAAGT	1e-5	-1.279e+01	0.0000	9801.0	12.48%	9319.1	11.95%
ELF5(ETS)/T47D-ELF5-ChIP-Seq(GSE30407)/Homer	ACVAGGAAGT	1e-5	-1.274e+01	0.0000	5414.0	6.89%	5062.6	6.49%
PAX3:FKHR-fusion(Paired,Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer	ACCRTGACTAATTNN	1e-5	-1.250e+01	0.0000	1253.0	1.60%	1094.8	1.40%
HRE(HSF)/Striatum-HSF1-ChIP-Seq(GSE38000)/Homer	TTCTAGAABNTTCTA	1e-5	-1.191e+01	0.0000	1362.0	1.73%	1200.0	1.54%
Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer	ATATGCAAAT	1e-5	-1.172e+01	0.0000	2104.0	2.68%	1901.7	2.44%
Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATATTC	1e-4	-1.142e+01	0.0000	649.0	0.83%	543.4	0.70%
NF1:FOXA1(CTF,Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WNTGTTTRYTTTGGCA	1e-4	-1.135e+01	0.0000	390.0	0.50%	310.7	0.40%
ZBTB33(Zf)/GM12878-ZBTB33-ChIP-Seq(GSE32465)/Homer	GGVTCTCGCGAGAAC	1e-4	-1.039e+01	0.0001	416.0	0.53%	337.3	0.43%
ERE(NR),IR3/MCF7-ERa-ChIP-Seq(Unpublished)/Homer	VAGGTCACNSTGACC	1e-4	-1.000e+01	0.0001	1738.0	2.21%	1570.8	2.01%
MyoG(bHLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer	AACAGCTG	1e-4	-9.899e+00	0.0001	8766.0	11.16%	8367.4	10.73%
Zfp809(Zf)/ES-Zfp809-ChIP-Seq(GSE70799)/Homer	GGGGCTYGKCTGGGA	1e-4	-9.632e+00	0.0001	2358.0	3.00%	2165.0	2.78%
EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer	ATTTCCTGTN	1e-4	-9.466e+00	0.0001	5115.0	6.51%	4823.2	6.18%
Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer	GGCCATAAATCA	1e-3	-9.089e+00	0.0002	3130.0	3.98%	2911.5	3.73%
ZSCAN22(Zf)/HEK293-ZSCAN22.GFP-ChIP-Seq(GSE58341)/Homer	SMCAGTCWGAKGGAGGAGGC	1e-3	-8.995e+00	0.0002	690.0	0.88%	594.6	0.76%
PRDM1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer	ACTTTCACTTTC	1e-3	-8.833e+00	0.0003	4053.0	5.16%	3805.9	4.88%
IRF:BATF(IRF:bZIP)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	CTTTCANTATGACTV	1e-3	-8.774e+00	0.0003	792.0	1.01%	690.4	0.89%
Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGMATATDC	1e-3	-8.504e+00	0.0004	6584.0	8.38%	6268.2	8.04%
HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer	TTTTATKRGG	1e-3	-8.035e+00	0.0006	7250.0	9.23%	6927.7	8.88%
T1ISRE(IRF)/ThioMac-Ifnb-Expression/Homer	ACTTTCGTTTCT	1e-3	-7.993e+00	0.0006	100.0	0.13%	69.3	0.09%
OCT:OCT(POU,Homeobox,IR1)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATWATTCATGA	1e-3	-7.980e+00	0.0006	118.0	0.15%	84.9	0.11%
Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer	CVGTSCTCCC	1e-3	-7.826e+00	0.0007	16466.0	20.96%	15972.3	20.48%
Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer	VBSYGTCTGG	1e-3	-7.731e+00	0.0008	11924.0	15.18%	11510.8	14.76%
Brachyury(T-box)/Mesoendoderm-Brachyury-ChIP-exo(GSE54963)/Homer	ANTTMRCASBNNNGTGYKAAN	1e-3	-7.463e+00	0.0010	1642.0	2.09%	1504.3	1.93%
Chop(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	ATTGCATCAT	1e-3	-7.440e+00	0.0010	1414.0	1.80%	1287.1	1.65%
MyoD(bHLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer	RRCAGCTGYTSY	1e-3	-7.347e+00	0.0011	6582.0	8.38%	6290.7	8.07%
RBPJ:Ebox(?,bHLH)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	GGGRAARRGRMCAGMTG	1e-3	-7.298e+00	0.0011	2492.0	3.17%	2321.8	2.98%
c-Myc(bHLH)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	VVCCACGTGG	1e-3	-7.233e+00	0.0012	3505.0	4.46%	3300.7	4.23%
Pax7(Paired,Homeobox),long/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCHGATTAC	1e-3	-7.219e+00	0.0012	152.0	0.19%	115.9	0.15%
Phox2a(Homeobox)/Neuron-Phox2a-ChIP-Seq(GSE31456)/Homer	YTAATYNRATTA	1e-3	-7.139e+00	0.0013	2633.0	3.35%	2459.5	3.15%
TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer	YCWGGAATGY	1e-3	-7.108e+00	0.0014	4903.0	6.24%	4659.3	5.97%
Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer	GGTGYTGACAGS	1e-3	-6.919e+00	0.0016	1399.0	1.78%	1279.0	1.64%
Egr2(Zf)/Thymocytes-Egr2-ChIP-Seq(GSE34254)/Homer	NGCGTGGGCGGR	1e-2	-6.838e+00	0.0018	1876.0	2.39%	1735.4	2.22%
Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	MACAGGAAGT	1e-2	-6.835e+00	0.0018	1926.0	2.45%	1783.5	2.29%
PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer	GSCTGTCACTCA	1e-2	-6.725e+00	0.0019	555.0	0.71%	483.5	0.62%
PU.1(ETS)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	AGAGGAAGTG	1e-2	-6.542e+00	0.0023	3421.0	4.36%	3230.6	4.14%
ZNF675(Zf)/HEK293-ZNF675.GFP-ChIP-Seq(GSE58341)/Homer	ARGAGGMCAAAATGW	1e-2	-6.386e+00	0.0027	942.0	1.20%	849.3	1.09%
CHR(?)/Hela-CellCycle-Expression/Homer	SRGTTTCAAA	1e-2	-6.001e+00	0.0040	4483.0	5.71%	4273.0	5.48%
TEAD2(TEA)/Py2T-Tead2-ChIP-Seq(GSE55709)/Homer	CCWGGAATGY	1e-2	-4.868e+00	0.0122	3838.0	4.89%	3667.9	4.70%
GATA(Zf),IR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NAGATWNBNATCTNN	1e-2	-4.861e+00	0.0122	368.0	0.47%	321.3	0.41%
HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer	NCYAATAAAA	1e-1	-4.568e+00	0.0163	7838.0	9.98%	7591.5	9.73%
Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer	GTCATGCHTGRCTGS	1e-1	-4.527e+00	0.0169	3062.0	3.90%	2918.5	3.74%
bHLHE40(bHLH)/HepG2-BHLHE40-ChIP-Seq(GSE31477)/Homer	KCACGTGMCN	1e-1	-4.490e+00	0.0175	2101.0	2.67%	1985.9	2.55%
Tgif1(Homeobox)/mES-Tgif1-ChIP-Seq(GSE55404)/Homer	YTGWCADY	1e-1	-4.263e+00	0.0218	21462.0	27.32%	21039.3	26.97%
SpiB(ETS)/OCILY3-SPIB-ChIP-Seq(GSE56857)/Homer	AAAGRGGAAGTG	1e-1	-3.900e+00	0.0312	1702.0	2.17%	1608.1	2.06%
PRDM14(Zf)/H1-PRDM14-ChIP-Seq(GSE22767)/Homer	RGGTCTCTAACY	1e-1	-3.866e+00	0.0321	1819.0	2.32%	1722.5	2.21%
AP-2gamma(AP2)/MCF7-TFAP2C-ChIP-Seq(GSE21234)/Homer	SCCTSAGGSCAW	1e-1	-3.755e+00	0.0357	10457.0	13.31%	10196.1	13.07%
bZIP:IRF(bZIP,IRF)/Th17-BatF-ChIP-Seq(GSE39756)/Homer	NAGTTTCABTHTGACTNW	1e-1	-3.726e+00	0.0366	3057.0	3.89%	2930.0	3.76%
NFAT:AP1(RHD,bZIP)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	SARTGGAAAAWRTGAGTCAB	1e-1	-3.631e+00	0.0400	1124.0	1.43%	1053.5	1.35%
FOXM1(Forkhead)/MCF7-FOXM1-ChIP-Seq(GSE72977)/Homer	TRTTTACTTW	1e-1	-3.518e+00	0.0446	7229.0	9.20%	7027.6	9.01%
p53(p53)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	ACATGCCCGGGCAT	1e-1	-3.255e+00	0.0578	179.0	0.23%	155.4	0.20%
PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer	ADGGYAGYAGCATCT	1e-1	-3.148e+00	0.0640	3131.0	3.99%	3016.5	3.87%
Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer	TBGCACGCAA	1e-1	-2.926e+00	0.0796	4420.0	5.63%	4287.0	5.50%
FoxL2(Forkhead)/Ovary-FoxL2-ChIP-Seq(GSE60858)/Homer	WWTRTAAACAVG	1e-1	-2.542e+00	0.1163	5637.0	7.18%	5496.9	7.05%
PAX5(Paired,Homeobox),condensed/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GTCACGCTCSCTGM	1e-1	-2.519e+00	0.1183	753.0	0.96%	710.1	0.91%
E2F1(E2F)/Hela-E2F1-ChIP-Seq(GSE22478)/Homer	CWGGCGGGAA	1e-1	-2.442e+00	0.1273	2562.0	3.26%	2477.5	3.18%
HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer	GYCATCMATCAT	1e-1	-2.392e+00	0.1332	535.0	0.68%	501.5	0.64%
HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer	CARRGKBCAAAGTYCA	1e-1	-2.349e+00	0.1385	2854.0	3.63%	2766.4	3.55%
Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer	BTCAAGGTCA	1e0	-2.252e+00	0.1518	3474.0	4.42%	3378.9	4.33%
PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GCAGCCAAGCRTGACH	1e0	-2.211e+00	0.1574	3199.0	4.07%	3109.3	3.99%
Pax7(Paired,Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCAATTA	1e0	-2.080e+00	0.1786	567.0	0.72%	536.1	0.69%
ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer	WDNCTGGGCA	1e0	-2.022e+00	0.1885	14342.0	18.26%	14121.2	18.10%
Myf5(bHLH)/GM-Myf5-ChIP-Seq(GSE24852)/Homer	BAACAGCTGT	1e0	-1.924e+00	0.2071	5309.0	6.76%	5198.9	6.67%
Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer	AGGTGHCAGACA	1e0	-1.905e+00	0.2100	1247.0	1.59%	1202.1	1.54%
p63(p53)/Keratinocyte-p63-ChIP-Seq(GSE17611)/Homer	NNDRCATGYCYNRRCATGYH	1e0	-1.867e+00	0.2172	2363.0	3.01%	2298.8	2.95%
ETS:RUNX(ETS,Runt)/Jurkat-RUNX1-ChIP-Seq(GSE17954)/Homer	RCAGGATGTGGT	1e0	-1.765e+00	0.2395	668.0	0.85%	639.2	0.82%
FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WAAGTAAACA	1e0	-1.741e+00	0.2442	8351.0	10.63%	8212.3	10.53%
EBNA1(EBV-virus)/Raji-EBNA1-ChIP-Seq(GSE30709)/Homer	GGYAGCAYDTGCTDCCCNNN	1e0	-1.651e+00	0.2662	112.0	0.14%	102.0	0.13%
Atf7(bZIP)/3T3L1-Atf7-ChIP-Seq(GSE56872)/Homer	NGRTGACGTCAY	1e0	-1.482e+00	0.3136	3751.0	4.78%	3680.6	4.72%
ETS:E-box(ETS,bHLH)/HPC7-Scl-ChIP-Seq(GSE22178)/Homer	AGGAARCAGCTG	1e0	-1.421e+00	0.3322	582.0	0.74%	561.7	0.72%
Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer	VGCTGWCAVB	1e0	-1.412e+00	0.3336	11968.0	15.24%	11814.9	15.15%
Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer	TGACCTTTNCNT	1e0	-1.231e+00	0.3981	977.0	1.24%	953.2	1.22%
GATA:SCL(Zf,bHLH)/Ter119-SCL-ChIP-Seq(GSE18720)/Homer	CRGCTGBNGNSNNSAGATAA	1e0	-1.225e+00	0.3990	623.0	0.79%	605.7	0.78%
TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer	ACWTCAAAGG	1e0	-1.213e+00	0.4017	420.0	0.53%	406.4	0.52%
FXR(NR),IR1/Liver-FXR-ChIP-Seq(Chong_et_al.)/Homer	AGGTCANTGACCTB	1e0	-1.137e+00	0.4316	2888.0	3.68%	2843.1	3.65%
GATA3(Zf),DR8/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATSTNDNNDSAGATAASN	1e0	-1.097e+00	0.4474	313.0	0.40%	303.1	0.39%
ZNF528(Zf)/HEK293-ZNF528.GFP-ChIP-Seq(GSE58341)/Homer	AGAAATGACTTCCCT	1e0	-9.369e-01	0.5230	30.0	0.04%	28.7	0.04%
ZBTB12(Zf)/HEK293-ZBTB12.GFP-ChIP-Seq(GSE58341)/Homer	NGNTCTAGAACCNGV	1e0	-9.262e-01	0.5264	2627.0	3.34%	2595.3	3.33%
Atf1(bZIP)/K562-ATF1-ChIP-Seq(GSE31477)/Homer	GATGACGTCA	1e0	-8.386e-01	0.5722	5231.0	6.66%	5182.1	6.64%
FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer	WAAGTAAACA	1e0	-6.447e-01	0.6918	6895.0	8.78%	6851.4	8.78%
RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer	TAGGGCAAAGGTCA	1e0	-6.402e-01	0.6921	8306.0	10.57%	8253.6	10.58%
ZNF382(Zf)/HEK293-ZNF382.GFP-ChIP-Seq(GSE58341)/Homer	GNCTGTASTRNTGBCTCHTT	1e0	-5.473e-01	0.7563	128.0	0.16%	129.9	0.17%
ZNF165(Zf)/WHIM12-ZNF165-ChIP-Seq(GSE65937)/Homer	AAGGKGRCGCAGGCA	1e0	-4.351e-01	0.8426	1282.0	1.63%	1286.2	1.65%
p53(p53)/Saos-p53-ChIP-Seq(GSE15780)/Homer	RRCATGYCYRGRCATGYYYN	1e0	-4.243e-01	0.8449	515.0	0.66%	520.9	0.67%
p53(p53)/Saos-p53-ChIP-Seq/Homer	RRCATGYCYRGRCATGYYYN	1e0	-4.243e-01	0.8449	515.0	0.66%	520.9	0.67%
ZNF415(Zf)/HEK293-ZNF415.GFP-ChIP-Seq(GSE58341)/Homer	GRTGMTRGAGCC	1e0	-3.677e-01	0.8905	4373.0	5.57%	4374.8	5.61%
ZNF519(Zf)/HEK293-ZNF519.GFP-ChIP-Seq(GSE58341)/Homer	GAGSCCGAGC	1e0	-3.584e-01	0.8952	2294.0	2.92%	2303.0	2.95%
AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer	ATGCCCTGAGGC	1e0	-3.439e-01	0.9046	7937.0	10.10%	7927.2	10.16%
GRHL2(CP2)/HBE-GRHL2-ChIP-Seq(GSE46194)/Homer	AAACYKGTTWDACMRGTTTB	1e0	-3.090e-01	0.9331	2214.0	2.82%	2227.0	2.86%
Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer	BTCAAGGTCA	1e0	-2.645e-01	0.9717	4684.0	5.96%	4699.6	6.03%
ZNF669(Zf)/HEK293-ZNF669.GFP-ChIP-Seq(GSE58341)/Homer	GARTGGTCATCGCCC	1e0	-2.349e-01	0.9969	477.0	0.61%	491.0	0.63%
DMRT6(DM)/Testis-DMRT6-ChIP-Seq(GSE60440)/Homer	YDGHTACAWTGTADC	1e0	-2.179e-01	1.0000	1070.0	1.36%	1090.8	1.40%
GATA3(Zf),DR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATGKDGAGATAAG	1e0	-1.777e-01	1.0000	422.0	0.54%	439.7	0.56%
Hnf1(Homeobox)/Liver-Foxa2-Chip-Seq(GSE25694)/Homer	GGTTAAWCATTAA	1e0	-1.773e-01	1.0000	719.0	0.92%	740.7	0.95%
MafF(bZIP)/HepG2-MafF-ChIP-Seq(GSE31477)/Homer	HWWGTCAGCAWWTTT	1e0	-1.622e-01	1.0000	1905.0	2.43%	1936.1	2.48%
PPARE(NR),DR1/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer	TGACCTTTGCCCCA	1e0	-1.468e-01	1.0000	6700.0	8.53%	6738.6	8.64%
Reverb(NR),DR2/RAW-Reverba.biotin-ChIP-Seq(GSE45914)/Homer	GTRGGTCASTGGGTCA	1e0	-9.823e-02	1.0000	1051.0	1.34%	1086.7	1.39%
DMRT1(DM)/Testis-DMRT1-ChIP-Seq(GSE64892)/Homer	TWGHWACAWTGTWDC	1e0	-8.793e-02	1.0000	1388.0	1.77%	1429.8	1.83%
RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer	RGGTCADNNAGAGGTCAV	1e0	-8.739e-02	1.0000	150.0	0.19%	166.8	0.21%
VDR(NR),DR3/GM10855-VDR+vitD-ChIP-Seq(GSE22484)/Homer	ARAGGTCANWGAGTTCANNN	1e0	-8.555e-02	1.0000	1173.0	1.49%	1212.5	1.55%
NFkB-p50,p52(RHD)/Monocyte-p50-ChIP-Chip(Schreiber_et_al.)/Homer	GGGGGAATCCCC	1e0	-5.659e-02	1.0000	875.0	1.11%	916.5	1.18%
Ascl1(bHLH)/NeuralTubes-Ascl1-ChIP-Seq(GSE55840)/Homer	NNVVCAGCTGBN	1e0	-5.491e-02	1.0000	13218.0	16.83%	13293.3	17.04%
Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer	GCCACACCCA	1e0	-3.941e-02	1.0000	3748.0	4.77%	3827.4	4.91%
NPAS2(bHLH)/Liver-NPAS2-ChIP-Seq(GSE39860)/Homer	KCCACGTGAC	1e0	-3.420e-02	1.0000	7850.0	9.99%	7948.5	10.19%
Pax7(Paired,Homeobox),longest/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	NTAATTDGCYAATTANNWWD	1e0	-3.003e-02	1.0000	202.0	0.26%	228.3	0.29%
Mouse_Recombination_Hotspot(Zf)/Testis-DMC1-ChIP-Seq(GSE24438)/Homer	ACTYKNATTCGTGNTACTTC	1e0	-1.983e-02	1.0000	376.0	0.48%	414.4	0.53%
Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer	NYTAATCCYB	1e0	-1.500e-02	1.0000	5401.0	6.88%	5517.2	7.07%
HIF-1a(bHLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer	TACGTGCV	1e0	-1.129e-02	1.0000	1611.0	2.05%	1691.1	2.17%
Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer	CAAAGGTCAG	1e0	-8.715e-03	1.0000	17454.0	22.22%	17607.9	22.57%
HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer	NTATYGATCH	1e0	-7.830e-03	1.0000	2978.0	3.79%	3087.6	3.96%
Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer	GYMATAAAAH	1e0	-5.930e-03	1.0000	4437.0	5.65%	4569.8	5.86%
ZNF16(Zf)/HEK293-ZNF16.GFP-ChIP-Seq(GSE58341)/Homer	MACCTTCYATGGCTCCCTAKTGCCY	1e0	-2.881e-03	1.0000	60.0	0.08%	83.9	0.11%
ZNF41(Zf)/HEK293-ZNF41.GFP-ChIP-Seq(GSE58341)/Homer	CCTCATGGTGYCYTWYTCCCTTGTG	1e0	-2.640e-03	1.0000	140.0	0.18%	174.5	0.22%
ZNF317(Zf)/HEK293-ZNF317.GFP-ChIP-Seq(GSE58341)/Homer	GTCWGCTGTYYCTCT	1e0	-1.756e-03	1.0000	508.0	0.65%	572.9	0.73%
CEBP:CEBP(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	NTNATGCAAYMNNHTGMAAY	1e0	-9.000e-04	1.0000	972.0	1.24%	1064.8	1.37%
Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer	KTGACCTTGA	1e0	-7.320e-04	1.0000	3927.0	5.00%	4095.9	5.25%
GLI3(Zf)/Limb-GLI3-ChIP-Chip(GSE11077)/Homer	CGTGGGTGGTCC	1e0	-6.150e-04	1.0000	765.0	0.97%	851.9	1.09%
HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer	RTACGTGC	1e0	-5.760e-04	1.0000	7111.0	9.05%	7323.4	9.39%
CEBP(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	ATTGCGCAAC	1e0	-1.730e-04	1.0000	5116.0	6.51%	5329.6	6.83%
GATA(Zf),IR3/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NNNNNBAGATAWYATCTVHN	1e0	-5.800e-05	1.0000	841.0	1.07%	950.4	1.22%
Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer	ATTAACACCT	1e0	-3.900e-05	1.0000	14638.0	18.64%	14966.8	19.19%
TR4(NR),DR1/Hela-TR4-ChIP-Seq(GSE24685)/Homer	GAGGTCAAAGGTCA	1e0	-3.500e-05	1.0000	508.0	0.65%	599.0	0.77%
ZNF692(Zf)/HEK293-ZNF692.GFP-ChIP-Seq(GSE58341)/Homer	GTGGGCCCCA	1e0	-2.800e-05	1.0000	1223.0	1.56%	1358.0	1.74%
RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer	AGGTCAAGGTCA	1e0	-2.600e-05	1.0000	182.0	0.23%	240.7	0.31%
ZFP3(Zf)/HEK293-ZFP3.GFP-ChIP-Seq(GSE58341)/Homer	GGGTTTTGAAGGATGARTAGGAGTT	1e0	-9.000e-06	1.0000	16.0	0.02%	39.2	0.05%
FOXA1:AR(Forkhead,NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	AGTAAACAAAAAAGAACAND	1e0	-5.000e-06	1.0000	458.0	0.58%	555.5	0.71%
HIF2a(bHLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer	GCACGTACCC	1e0	-1.000e-06	1.0000	2033.0	2.59%	2232.1	2.86%
RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer	AGGTCAAGGTCA	1e0	-0.000e+00	1.0000	754.0	0.96%	893.9	1.15%
ZNF136(Zf)/HEK293-ZNF136.GFP-ChIP-Seq(GSE58341)/Homer	YTKGATAHAGTATTCTWGGTNGGCA	1e0	-0.000e+00	1.0000	710.0	0.90%	860.7	1.10%
Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer	AAGCACTTAA	1e0	-0.000e+00	1.0000	18675.0	23.77%	19337.2	24.79%
Srebp1a(bHLH)/HepG2-Srebp1a-ChIP-Seq(GSE31477)/Homer	RTCACSCCAY	1e0	-0.000e+00	1.0000	1673.0	2.13%	1961.9	2.52%
Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer	TAATCCCN	1e0	-0.000e+00	1.0000	33403.0	42.52%	34204.2	43.85%
ZBTB18(Zf)/HEK293-ZBTB18.GFP-ChIP-Seq(GSE58341)/Homer	AACATCTGGA	1e0	-0.000e+00	1.0000	3181.0	4.05%	3589.9	4.60%
Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer	AGGTGTGAAM	1e0	-0.000e+00	1.0000	6847.0	8.72%	7407.9	9.50%
EKLF(Zf)/Erythrocyte-Klf1-ChIP-Seq(GSE20478)/Homer	NWGGGTGTGGCY	1e0	-0.000e+00	1.0000	1410.0	1.80%	1722.8	2.21%
Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer	TTRAGTGSYK	1e0	0.000e+00	1.0000	18969.0	24.15%	21507.7	27.57%
CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer	GCTAATCC	1e0	0.000e+00	1.0000	18268.0	23.26%	20655.5	26.48%
E2A(bHLH)/proBcell-E2A-ChIP-Seq(GSE21978)/Homer	DNRCAGCTGY	1e0	0.000e+00	1.0000	12567.0	16.00%	14969.0	19.19%
E2A(bHLH),near_PU.1/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	NVCACCTGBN	1e0	0.000e+00	1.0000	10233.0	13.03%	14073.2	18.04%
Gata2(Zf)/K562-GATA2-ChIP-Seq(GSE18829)/Homer	BBCTTATCTS	1e0	0.000e+00	1.0000	2953.0	3.76%	3581.0	4.59%
GATA3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATAASR	1e0	0.000e+00	1.0000	8327.0	10.60%	9323.7	11.95%
Gata4(Zf)/Heart-Gata4-ChIP-Seq(GSE35151)/Homer	NBWGATAAGR	1e0	0.000e+00	1.0000	5149.0	6.56%	5725.5	7.34%
Gata1(Zf)/K562-GATA1-ChIP-Seq(GSE18829)/Homer	SAGATAAGRV	1e0	0.000e+00	1.0000	2586.0	3.29%	3140.5	4.03%
Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer	MAATCACTGC	1e0	0.000e+00	1.0000	5809.0	7.40%	6393.4	8.20%
GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer	RGGATTAR	1e0	0.000e+00	1.0000	10147.0	12.92%	13245.2	16.98%
HEB(bHLH)/mES-Heb-ChIP-Seq(GSE53233)/Homer	VCAGCTGBNN	1e0	0.000e+00	1.0000	16214.0	20.64%	18291.9	23.45%
LXRE(NR),DR4/RAW-LXRb.biotin-ChIP-Seq(GSE21512)/Homer	RGGTTACTANAGGTCA	1e0	0.000e+00	1.0000	821.0	1.05%	1412.3	1.81%
Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529)/Homer	CYAAAAATAG	1e0	0.000e+00	1.0000	4059.0	5.17%	5148.9	6.60%
Mef2b(MADS)/HEK293-Mef2b.V5-ChIP-Seq(GSE67450)/Homer	GCTATTTTTGGM	1e0	0.000e+00	1.0000	7022.0	8.94%	8028.4	10.29%
Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer	DCYAAAAATAGM	1e0	0.000e+00	1.0000	4378.0	5.57%	5741.1	7.36%
Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer	RSCACTYRAG	1e0	0.000e+00	1.0000	23062.0	29.36%	24112.9	30.91%
Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer	BTBRAGTGSN	1e0	0.000e+00	1.0000	16595.0	21.13%	17964.0	23.03%
Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer	RRSCACTYAA	1e0	0.000e+00	1.0000	17858.0	22.73%	18862.1	24.18%
Ptf1a(bHLH)/Panc1-Ptf1a-ChIP-Seq(GSE47459)/Homer	ACAGCTGTTN	1e0	0.000e+00	1.0000	21409.0	27.26%	23540.0	30.18%
Srebp2(bHLH)/HepG2-Srebp2-ChIP-Seq(GSE31477)/Homer	CGGTCACSCCAC	1e0	0.000e+00	1.0000	1229.0	1.56%	1574.1	2.02%
Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer	AGGTGTCA	1e0	0.000e+00	1.0000	25301.0	32.21%	27211.9	34.89%
THRa(NR)/C17.2-THRa-ChIP-Seq(GSE38347)/Homer	GGTCANYTGAGGWCA	1e0	0.000e+00	1.0000	3814.0	4.86%	4599.9	5.90%