Motif Name	Consensus	P-value	Log P-value	q-value (Benjamini)	# of Target Sequences with Motif(of 101760)	% of Target Sequences with Motif	# of Background Sequences with Motif(of 100382)	% of Background Sequences with Motif
CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	AYAGTGCCMYCTRGTGGCCA	1e-6286	-1.447e+04	0.0000	9657.0	9.49%	893.4	0.89%
BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer	CNNBRGCGCCCCCTGSTGGC	1e-3608	-8.308e+03	0.0000	10266.0	10.09%	2107.0	2.11%
NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer	YTGCCAAG	1e-1767	-4.070e+03	0.0000	30733.0	30.21%	18493.5	18.49%
NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer	CYTGGCABNSTGCCAR	1e-1039	-2.394e+03	0.0000	9160.0	9.00%	4067.5	4.07%
Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	CTGGCAGSCTGCCA	1e-686	-1.581e+03	0.0000	8281.0	8.14%	4179.9	4.18%
Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer	GTTGCCATGGCAACM	1e-458	-1.056e+03	0.0000	2042.0	2.01%	598.0	0.60%
RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer	CGGTTGCCATGGCAAC	1e-432	-9.967e+02	0.0000	1871.0	1.84%	535.3	0.54%
Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	KGTTGCCATGGCAA	1e-404	-9.316e+02	0.0000	3618.0	3.56%	1595.0	1.59%
Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer	TAATTAGN	1e-390	-8.987e+02	0.0000	12454.0	12.24%	8344.0	8.34%
X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	GGTTGCCATGGCAA	1e-369	-8.515e+02	0.0000	2126.0	2.09%	738.6	0.74%
Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer	ADBTAATTAR	1e-368	-8.491e+02	0.0000	18521.0	18.20%	13598.0	13.60%
Lhx1(Homeobox)/EmbryoCarcinoma-Lhx1-ChIP-Seq(GSE70957)/Homer	NNYTAATTAR	1e-361	-8.313e+02	0.0000	13201.0	12.98%	9099.7	9.10%
SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer	AVCAGCTG	1e-322	-7.426e+02	0.0000	52753.0	51.85%	45841.0	45.84%
Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer	GKTAATGR	1e-302	-6.954e+02	0.0000	26614.0	26.16%	21269.8	21.27%
Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer	SCCTAGCAACAG	1e-282	-6.509e+02	0.0000	4840.0	4.76%	2731.3	2.73%
Fra1(bZIP)/BT549-Fra1-ChIP-Seq(GSE46166)/Homer	NNATGASTCATH	1e-270	-6.225e+02	0.0000	5937.0	5.84%	3603.6	3.60%
Atf3(bZIP)/GBM-ATF3-ChIP-Seq(GSE33912)/Homer	DATGASTCATHN	1e-233	-5.379e+02	0.0000	6941.0	6.82%	4539.7	4.54%
Sox9(HMG)/Limb-SOX9-ChIP-Seq(GSE73225)/Homer	AGGVNCCTTTGT	1e-233	-5.366e+02	0.0000	10051.0	9.88%	7108.1	7.11%
Fosl2(bZIP)/3T3L1-Fosl2-ChIP-Seq(GSE56872)/Homer	NATGASTCABNN	1e-230	-5.308e+02	0.0000	3778.0	3.71%	2099.7	2.10%
Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer	CCWTTGTY	1e-227	-5.237e+02	0.0000	19091.0	18.77%	15040.6	15.04%
BATF(bZIP)/Th17-BATF-ChIP-Seq(GSE39756)/Homer	DATGASTCAT	1e-224	-5.158e+02	0.0000	6747.0	6.63%	4424.2	4.42%
AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer	CCAGGAACAG	1e-222	-5.120e+02	0.0000	41589.0	40.88%	36043.9	36.04%
Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer	CTAATKGV	1e-217	-5.008e+02	0.0000	20272.0	19.93%	16183.8	16.18%
STAT4(Stat)/CD4-Stat4-ChIP-Seq(GSE22104)/Homer	NYTTCCWGGAAR	1e-214	-4.942e+02	0.0000	11238.0	11.05%	8222.6	8.22%
Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer	CCWTTGTYYB	1e-212	-4.892e+02	0.0000	17823.0	17.52%	14020.7	14.02%
Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer	TWGTCTGV	1e-209	-4.818e+02	0.0000	32652.0	32.09%	27695.1	27.69%
Jun-AP1(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	GATGASTCATCN	1e-205	-4.721e+02	0.0000	2808.0	2.76%	1467.5	1.47%
AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	VTGACTCATC	1e-201	-4.649e+02	0.0000	7615.0	7.49%	5236.9	5.24%
Stat3+il21(Stat)/CD4-Stat3-ChIP-Seq(GSE19198)/Homer	SVYTTCCNGGAARB	1e-201	-4.636e+02	0.0000	8777.0	8.63%	6208.9	6.21%
Bcl6(Zf)/Liver-Bcl6-ChIP-Seq(GSE31578)/Homer	NNNCTTTCCAGGAAA	1e-186	-4.283e+02	0.0000	15506.0	15.24%	12157.2	12.16%
Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	RGCCATTAAC	1e-176	-4.062e+02	0.0000	43193.0	42.46%	38113.0	38.11%
BMYB(HTH)/Hela-BMYB-ChIP-Seq(GSE27030)/Homer	NHAACBGYYV	1e-172	-3.965e+02	0.0000	15701.0	15.43%	12442.5	12.44%
MYB(HTH)/ERMYB-Myb-ChIPSeq(GSE22095)/Homer	GGCVGTTR	1e-169	-3.902e+02	0.0000	18339.0	18.03%	14844.4	14.84%
PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer	VAGRACAKNCTGTBC	1e-166	-3.835e+02	0.0000	22599.0	22.21%	18768.3	18.77%
Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer	CCATTGTTNY	1e-162	-3.745e+02	0.0000	16924.0	16.64%	13624.5	13.62%
RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer	AAYTAGGTCA	1e-161	-3.720e+02	0.0000	1754.0	1.72%	838.9	0.84%
AMYB(HTH)/Testes-AMYB-ChIP-Seq(GSE44588)/Homer	TGGCAGTTGG	1e-158	-3.655e+02	0.0000	16189.0	15.91%	12995.9	13.00%
Bach2(bZIP)/OCILy7-Bach2-ChIP-Seq(GSE44420)/Homer	TGCTGAGTCA	1e-149	-3.435e+02	0.0000	2353.0	2.31%	1289.4	1.29%
Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer	TGTCANYT	1e-146	-3.383e+02	0.0000	34157.0	33.57%	29826.3	29.82%
Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer	BCCATTGTTC	1e-133	-3.079e+02	0.0000	9607.0	9.44%	7345.7	7.35%
NFY(CCAAT)/Promoter/Homer	RGCCAATSRG	1e-132	-3.058e+02	0.0000	8593.0	8.45%	6469.6	6.47%
Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer	YCTTTGTTCC	1e-127	-2.938e+02	0.0000	9489.0	9.33%	7287.2	7.29%
Stat3(Stat)/mES-Stat3-ChIP-Seq(GSE11431)/Homer	CTTCCGGGAA	1e-118	-2.735e+02	0.0000	6132.0	6.03%	4449.8	4.45%
Oct6(POU,Homeobox)/NPC-Oct6-ChIP-Seq(GSE35496)/Homer	WATGCAAATGAG	1e-114	-2.639e+02	0.0000	4292.0	4.22%	2935.1	2.93%
MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer	TGCTGACTCA	1e-112	-2.581e+02	0.0000	8727.0	8.58%	6737.3	6.74%
Bach1(bZIP)/K562-Bach1-ChIP-Seq(GSE31477)/Homer	AWWNTGCTGAGTCAT	1e-110	-2.545e+02	0.0000	802.0	0.79%	318.6	0.32%
Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	HTTTCCCASG	1e-106	-2.447e+02	0.0000	16547.0	16.26%	13835.1	13.83%
REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer	GGMGCTGTCCATGGTGCTGA	1e-101	-2.332e+02	0.0000	339.0	0.33%	79.8	0.08%
ARE(NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	RGRACASNSTGTYCYB	1e-101	-2.332e+02	0.0000	2839.0	2.79%	1823.4	1.82%
NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer	GCCATCTGTT	1e-96	-2.218e+02	0.0000	10097.0	9.92%	8083.7	8.08%
Foxo1(Forkhead)/RAW-Foxo1-ChIP-Seq(Fan_et_al.)/Homer	CTGTTTAC	1e-93	-2.159e+02	0.0000	20629.0	20.28%	17767.5	17.77%
NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	ATTTTCCATT	1e-93	-2.143e+02	0.0000	9475.0	9.31%	7557.8	7.56%
PGR(NR)/EndoStromal-PGR-ChIP-Seq(GSE69539)/Homer	AAGAACATWHTGTTC	1e-91	-2.102e+02	0.0000	2492.0	2.45%	1590.8	1.59%
NF-E2(bZIP)/K562-NFE2-ChIP-Seq(GSE31477)/Homer	GATGACTCAGCA	1e-91	-2.098e+02	0.0000	853.0	0.84%	383.7	0.38%
Fox:Ebox(Forkhead,bHLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer	NNNVCTGWGYAAACASN	1e-87	-2.012e+02	0.0000	9351.0	9.19%	7498.7	7.50%
Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	TATGCWAATBAV	1e-87	-2.006e+02	0.0000	3092.0	3.04%	2090.3	2.09%
GRE(NR),IR3/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer	VAGRACAKWCTGTYC	1e-84	-1.945e+02	0.0000	2540.0	2.50%	1657.7	1.66%
Ap4(bHLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer	NAHCAGCTGD	1e-82	-1.899e+02	0.0000	15149.0	14.89%	12825.6	12.82%
GRE(NR),IR3/A549-GR-ChIP-Seq(GSE32465)/Homer	NRGVACABNVTGTYCY	1e-80	-1.862e+02	0.0000	1572.0	1.55%	918.1	0.92%
Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer	RCCATMTGTT	1e-79	-1.823e+02	0.0000	20706.0	20.35%	18040.7	18.04%
CTCF-SatelliteElement(Zf?)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	TGCAGTTCCMVNWRTGGCCA	1e-73	-1.683e+02	0.0000	324.0	0.32%	95.4	0.10%
Nrf2(bZIP)/Lymphoblast-Nrf2-ChIP-Seq(GSE37589)/Homer	HTGCTGAGTCAT	1e-69	-1.599e+02	0.0000	721.0	0.71%	339.1	0.34%
Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer	VNRVCAGCTGGY	1e-69	-1.595e+02	0.0000	13004.0	12.78%	11013.0	11.01%
EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer	GTCCCCWGGGGA	1e-66	-1.541e+02	0.0000	13797.0	13.56%	11773.2	11.77%
Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer	VCAGCTGYTG	1e-60	-1.403e+02	0.0000	12830.0	12.61%	10959.1	10.96%
STAT5(Stat)/mCD4+-Stat5-ChIP-Seq(GSE12346)/Homer	RTTTCTNAGAAA	1e-60	-1.391e+02	0.0000	3729.0	3.67%	2777.8	2.78%
STAT6(Stat)/Macrophage-Stat6-ChIP-Seq(GSE38377)/Homer	TTCCKNAGAA	1e-58	-1.357e+02	0.0000	5722.0	5.62%	4527.1	4.53%
Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	CACAGCAGGGGG	1e-56	-1.303e+02	0.0000	7734.0	7.60%	6350.7	6.35%
Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer	RAACAATGGN	1e-56	-1.297e+02	0.0000	11542.0	11.35%	9831.7	9.83%
TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer	CCWGGAATGY	1e-55	-1.286e+02	0.0000	9511.0	9.35%	7973.5	7.97%
FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer	NYYTGTTTACHN	1e-53	-1.234e+02	0.0000	3970.0	3.90%	3034.1	3.03%
MITF(bHLH)/MastCells-MITF-ChIP-Seq(GSE48085)/Homer	RTCATGTGAC	1e-53	-1.221e+02	0.0000	8822.0	8.67%	7378.3	7.38%
STAT1(Stat)/HelaS3-STAT1-ChIP-Seq(GSE12782)/Homer	NATTTCCNGGAAAT	1e-52	-1.214e+02	0.0000	3204.0	3.15%	2380.6	2.38%
Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer	CYTGTTTACWYW	1e-51	-1.181e+02	0.0000	7179.0	7.06%	5906.1	5.91%
OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAACAATG	1e-50	-1.165e+02	0.0000	1868.0	1.84%	1273.0	1.27%
ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer	AGGCCTRG	1e-50	-1.160e+02	0.0000	17385.0	17.09%	15369.8	15.37%
IRF1(IRF)/PBMC-IRF1-ChIP-Seq(GSE43036)/Homer	GAAAGTGAAAGT	1e-50	-1.153e+02	0.0000	1817.0	1.79%	1234.2	1.23%
TATA-Box(TBP)/Promoter/Homer	CCTTTTAWAGSC	1e-45	-1.040e+02	0.0000	12248.0	12.04%	10644.7	10.64%
IRF2(IRF)/Erythroblas-IRF2-ChIP-Seq(GSE36985)/Homer	GAAASYGAAASY	1e-43	-1.001e+02	0.0000	1335.0	1.31%	876.9	0.88%
SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer	ASWTCCTGBT	1e-42	-9.866e+01	0.0000	10543.0	10.36%	9095.3	9.09%
Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer	CCTGCTGAGH	1e-42	-9.845e+01	0.0000	9786.0	9.62%	8396.9	8.40%
CRE(bZIP)/Promoter/Homer	CSGTGACGTCAC	1e-41	-9.658e+01	0.0000	2101.0	2.07%	1514.3	1.51%
STAT6(Stat)/CD4-Stat6-ChIP-Seq(GSE22104)/Homer	ABTTCYYRRGAA	1e-41	-9.535e+01	0.0000	5517.0	5.42%	4514.7	4.51%
ZNF264(Zf)/HEK293-ZNF264.GFP-ChIP-Seq(GSE58341)/Homer	RGGGCACTAACY	1e-39	-9.061e+01	0.0000	6619.0	6.51%	5535.9	5.54%
ZNF189(Zf)/HEK293-ZNF189.GFP-ChIP-Seq(GSE58341)/Homer	TGGAACAGMA	1e-38	-8.971e+01	0.0000	8871.0	8.72%	7605.2	7.60%
NF1:FOXA1(CTF,Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WNTGTTTRYTTTGGCA	1e-38	-8.843e+01	0.0000	619.0	0.61%	343.9	0.34%
PU.1:IRF8(ETS:IRF)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	GGAAGTGAAAST	1e-38	-8.807e+01	0.0000	2208.0	2.17%	1628.4	1.63%
ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer	ACAGGAAGTG	1e-38	-8.757e+01	0.0000	17734.0	17.43%	15926.6	15.93%
Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer	SSCMATWAAA	1e-37	-8.614e+01	0.0000	6414.0	6.30%	5372.8	5.37%
Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer	VBSYGTCTGG	1e-37	-8.593e+01	0.0000	16739.0	16.45%	14998.4	15.00%
Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer	CTGTCTGG	1e-37	-8.547e+01	0.0000	16682.0	16.40%	14948.8	14.95%
MyoD(bHLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer	RRCAGCTGYTSY	1e-33	-7.704e+01	0.0000	9984.0	9.81%	8721.0	8.72%
JunD(bZIP)/K562-JunD-ChIP-Seq/Homer	ATGACGTCATCN	1e-33	-7.660e+01	0.0000	772.0	0.76%	475.4	0.48%
Tcfcp2l1(CP2)/mES-Tcfcp2l1-ChIP-Seq(GSE11431)/Homer	NRAACCRGTTYRAACCRGYT	1e-33	-7.647e+01	0.0000	1505.0	1.48%	1067.4	1.07%
CHR(?)/Hela-CellCycle-Expression/Homer	SRGTTTCAAA	1e-32	-7.555e+01	0.0000	6255.0	6.15%	5285.3	5.28%
PAX6(Paired,Homeobox)/Forebrain-Pax6-ChIP-Seq(GSE66961)/Homer	NGTGTTCAVTSAAGCGKAAA	1e-31	-7.344e+01	0.0000	1032.0	1.01%	686.1	0.69%
USF1(bHLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer	SGTCACGTGR	1e-31	-7.220e+01	0.0000	4436.0	4.36%	3650.2	3.65%
EBF(EBF)/proBcell-EBF-ChIP-Seq(GSE21978)/Homer	DGTCCCYRGGGA	1e-31	-7.188e+01	0.0000	2595.0	2.55%	2014.2	2.01%
MyoG(bHLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer	AACAGCTG	1e-30	-6.912e+01	0.0000	12818.0	12.60%	11439.2	11.44%
Tcf21(bHLH)/ArterySmoothMuscle-Tcf21-ChIP-Seq(GSE61369)/Homer	NAACAGCTGG	1e-30	-6.909e+01	0.0000	11491.0	11.29%	10191.8	10.19%
Fli1(ETS)/CD8-FLI-ChIP-Seq(GSE20898)/Homer	NRYTTCCGGH	1e-29	-6.805e+01	0.0000	12355.0	12.14%	11012.8	11.01%
Mef2d(MADS)/Retina-Mef2d-ChIP-Seq(GSE61391)/Homer	GCTATTTTTAGC	1e-29	-6.795e+01	0.0000	2109.0	2.07%	1605.8	1.61%
TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer	YCWGGAATGY	1e-27	-6.438e+01	0.0000	7268.0	7.14%	6286.3	6.29%
Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer	NNTGTGGATTSS	1e-26	-6.040e+01	0.0000	5388.0	5.30%	4579.2	4.58%
E-box(bHLH)/Promoter/Homer	SSGGTCACGTGA	1e-25	-5.971e+01	0.0000	847.0	0.83%	565.2	0.57%
Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer	YCATYAATCA	1e-24	-5.727e+01	0.0000	7859.0	7.72%	6885.6	6.89%
Elk4(ETS)/Hela-Elk4-ChIP-Seq(GSE31477)/Homer	NRYTTCCGGY	1e-24	-5.665e+01	0.0000	6357.0	6.25%	5495.9	5.50%
ISRE(IRF)/ThioMac-LPS-Expression(GSE23622)/Homer	AGTTTCASTTTC	1e-23	-5.521e+01	0.0000	776.0	0.76%	517.0	0.52%
ETS1(ETS)/Jurkat-ETS1-ChIP-Seq(GSE17954)/Homer	ACAGGAAGTG	1e-23	-5.477e+01	0.0000	11050.0	10.86%	9898.3	9.90%
Sp1(Zf)/Promoter/Homer	GGCCCCGCCCCC	1e-23	-5.419e+01	0.0000	4837.0	4.75%	4111.5	4.11%
MafK(bZIP)/C2C12-MafK-ChIP-Seq(GSE36030)/Homer	GCTGASTCAGCA	1e-23	-5.316e+01	0.0000	2410.0	2.37%	1923.3	1.92%
NFAT:AP1(RHD,bZIP)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	SARTGGAAAAWRTGAGTCAB	1e-21	-5.035e+01	0.0000	1661.0	1.63%	1276.5	1.28%
PAX3:FKHR-fusion(Paired,Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer	ACCRTGACTAATTNN	1e-21	-4.945e+01	0.0000	1755.0	1.73%	1361.6	1.36%
Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer	GGGGGGGG	1e-21	-4.914e+01	0.0000	17610.0	17.31%	16193.1	16.19%
IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer	ACTGAAACCA	1e-21	-4.905e+01	0.0000	4274.0	4.20%	3626.6	3.63%
PU.1-IRF(ETS:IRF)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	MGGAAGTGAAAC	1e-21	-4.897e+01	0.0000	14815.0	14.56%	13526.8	13.53%
Egr1(Zf)/K562-Egr1-ChIP-Seq(GSE32465)/Homer	TGCGTGGGYG	1e-21	-4.880e+01	0.0000	7903.0	7.77%	6992.8	6.99%
CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	DRTGTTGCAA	1e-20	-4.818e+01	0.0000	7062.0	6.94%	6211.7	6.21%
RBPJ:Ebox(?,bHLH)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	GGGRAARRGRMCAGMTG	1e-20	-4.797e+01	0.0000	3625.0	3.56%	3040.4	3.04%
RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer	AAACCACARM	1e-20	-4.700e+01	0.0000	9629.0	9.46%	8629.0	8.63%
Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer	BTCAAGGTCA	1e-20	-4.686e+01	0.0000	5127.0	5.04%	4424.9	4.42%
PRDM1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer	ACTTTCACTTTC	1e-20	-4.636e+01	0.0000	6056.0	5.95%	5288.8	5.29%
GFY(?)/Promoter/Homer	ACTACAATTCCC	1e-20	-4.623e+01	0.0000	841.0	0.83%	590.1	0.59%
Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAW	1e-19	-4.546e+01	0.0000	4258.0	4.19%	3633.6	3.63%
ERE(NR),IR3/MCF7-ERa-ChIP-Seq(Unpublished)/Homer	VAGGTCACNSTGACC	1e-19	-4.493e+01	0.0000	2492.0	2.45%	2032.2	2.03%
Etv2(ETS)/ES-ER71-ChIP-Seq(GSE59402)/Homer(0.967)	NNAYTTCCTGHN	1e-19	-4.454e+01	0.0000	9984.0	9.81%	8987.1	8.99%
HRE(HSF)/Striatum-HSF1-ChIP-Seq(GSE38000)/Homer	TTCTAGAABNTTCTA	1e-18	-4.314e+01	0.0000	2037.0	2.00%	1634.8	1.63%
GFY-Staf(?,Zf)/Promoter/Homer	RACTACAATTCCCAGAAKGC	1e-18	-4.174e+01	0.0000	652.0	0.64%	445.7	0.45%
EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer	ATTTCCTGTN	1e-17	-4.144e+01	0.0000	7260.0	7.14%	6451.4	6.45%
HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer	TTTTATKRGG	1e-17	-4.105e+01	0.0000	9294.0	9.14%	8369.8	8.37%
PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer	ADGGYAGYAGCATCT	1e-17	-4.067e+01	0.0000	4759.0	4.68%	4126.4	4.13%
ZNF467(Zf)/HEK293-ZNF467.GFP-ChIP-Seq(GSE58341)/Homer	TGGGGAAGGGCM	1e-16	-3.806e+01	0.0000	10311.0	10.14%	9362.7	9.36%
OCT:OCT(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	ATGAATATTCATGAG	1e-16	-3.759e+01	0.0000	96.0	0.09%	35.6	0.04%
Tcf4(HMG)/Hct116-Tcf4-ChIP-Seq(SRA012054)/Homer	ASATCAAAGGVA	1e-15	-3.567e+01	0.0000	4038.0	3.97%	3494.3	3.49%
Elk1(ETS)/Hela-Elk1-ChIP-Seq(GSE31477)/Homer	HACTTCCGGY	1e-15	-3.564e+01	0.0000	6251.0	6.14%	5555.7	5.56%
RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer	SAAACCACAG	1e-15	-3.511e+01	0.0000	6340.0	6.23%	5643.2	5.64%
HRE(HSF)/HepG2-HSF1-ChIP-Seq(GSE31477)/Homer	BSTTCTRGAABVTTCYAGAA	1e-15	-3.458e+01	0.0000	1446.0	1.42%	1146.7	1.15%
CLOCK(bHLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer	GHCACGTG	1e-14	-3.307e+01	0.0000	4730.0	4.65%	4155.4	4.16%
NRF1(NRF)/MCF7-NRF1-ChIP-Seq(Unpublished)/Homer	CTGCGCATGCGC	1e-13	-3.219e+01	0.0000	1784.0	1.75%	1457.3	1.46%
FoxL2(Forkhead)/Ovary-FoxL2-ChIP-Seq(GSE60858)/Homer	WWTRTAAACAVG	1e-13	-3.176e+01	0.0000	7012.0	6.89%	6306.5	6.31%
TEAD2(TEA)/Py2T-Tead2-ChIP-Seq(GSE55709)/Homer	CCWGGAATGY	1e-13	-3.172e+01	0.0000	5598.0	5.50%	4977.4	4.98%
Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer	GGTGYTGACAGS	1e-13	-3.165e+01	0.0000	2060.0	2.02%	1708.8	1.71%
Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer	CVGTSCTCCC	1e-13	-3.132e+01	0.0000	22214.0	21.83%	20871.7	20.87%
GABPA(ETS)/Jurkat-GABPa-ChIP-Seq(GSE17954)/Homer	RACCGGAAGT	1e-13	-3.098e+01	0.0000	9602.0	9.44%	8767.5	8.77%
IRF:BATF(IRF:bZIP)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	CTTTCANTATGACTV	1e-13	-3.081e+01	0.0000	1128.0	1.11%	881.7	0.88%
ETS(ETS)/Promoter/Homer	AACCGGAAGT	1e-13	-3.078e+01	0.0000	3615.0	3.55%	3137.9	3.14%
OCT:OCT(POU,Homeobox,IR1)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATWATTCATGA	1e-13	-3.064e+01	0.0000	176.0	0.17%	93.1	0.09%
Myf5(bHLH)/GM-Myf5-ChIP-Seq(GSE24852)/Homer	BAACAGCTGT	1e-13	-3.016e+01	0.0000	7942.0	7.81%	7201.9	7.20%
Tgif1(Homeobox)/mES-Tgif1-ChIP-Seq(GSE55404)/Homer	YTGWCADY	1e-13	-3.016e+01	0.0000	28686.0	28.20%	27165.3	27.16%
Pit1+1bp(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGCATAATTCA	1e-12	-2.949e+01	0.0000	2770.0	2.72%	2367.5	2.37%
bZIP:IRF(bZIP,IRF)/Th17-BatF-ChIP-Seq(GSE39756)/Homer	NAGTTTCABTHTGACTNW	1e-12	-2.866e+01	0.0000	4363.0	4.29%	3848.7	3.85%
Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer	ASWTCAAAGG	1e-12	-2.838e+01	0.0000	2173.0	2.14%	1828.7	1.83%
AP-2gamma(AP2)/MCF7-TFAP2C-ChIP-Seq(GSE21234)/Homer	SCCTSAGGSCAW	1e-12	-2.838e+01	0.0000	14270.0	14.03%	13262.8	13.26%
CArG(MADS)/PUER-Srf-ChIP-Seq(Sullivan_et_al.)/Homer	CCATATATGGNM	1e-12	-2.814e+01	0.0000	2594.0	2.55%	2214.4	2.21%
ELF5(ETS)/T47D-ELF5-ChIP-Seq(GSE30407)/Homer	ACVAGGAAGT	1e-11	-2.568e+01	0.0000	7313.0	7.19%	6654.6	6.65%
EHF(ETS)/LoVo-EHF-ChIP-Seq(GSE49402)/Homer	AVCAGGAAGT	1e-11	-2.557e+01	0.0000	13505.0	13.27%	12569.4	12.57%
Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGMATATDC	1e-11	-2.546e+01	0.0000	7891.0	7.76%	7205.1	7.20%
FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WAAGTAAACA	1e-10	-2.456e+01	0.0000	10768.0	10.58%	9960.8	9.96%
EWS:FLI1-fusion(ETS)/SK_N_MC-EWS:FLI1-ChIP-Seq(SRA014231)/Homer	VACAGGAAAT	1e-10	-2.410e+01	0.0000	5893.0	5.79%	5327.5	5.33%
Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer	TGATTRATGGCY	1e-10	-2.355e+01	0.0000	1529.0	1.50%	1270.2	1.27%
Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATATTC	1e-10	-2.353e+01	0.0000	831.0	0.82%	648.2	0.65%
HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer	GGCCATAAATCA	1e-10	-2.353e+01	0.0000	5426.0	5.33%	4892.7	4.89%
ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer	AGGCCTAG	1e-10	-2.305e+01	0.0000	24666.0	24.25%	23398.8	23.40%
Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer	SCTGTCAVTCAV	1e-9	-2.272e+01	0.0000	2099.0	2.06%	1794.6	1.79%
Zfp809(Zf)/ES-Zfp809-ChIP-Seq(GSE70799)/Homer	GGGGCTYGKCTGGGA	1e-9	-2.251e+01	0.0000	3194.0	3.14%	2808.5	2.81%
Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer	BTCAAGGTCA	1e-9	-2.248e+01	0.0000	6678.0	6.56%	6088.8	6.09%
Usf2(bHLH)/C2C12-Usf2-ChIP-Seq(GSE36030)/Homer	GTCACGTGGT	1e-9	-2.199e+01	0.0000	3240.0	3.18%	2855.5	2.86%
Phox2a(Homeobox)/Neuron-Phox2a-ChIP-Seq(GSE31456)/Homer	YTAATYNRATTA	1e-9	-2.186e+01	0.0000	3196.0	3.14%	2815.7	2.82%
Max(bHLH)/K562-Max-ChIP-Seq(GSE31477)/Homer	RCCACGTGGYYN	1e-9	-2.134e+01	0.0000	5849.0	5.75%	5315.1	5.31%
ETV1(ETS)/GIST48-ETV1-ChIP-Seq(GSE22441)/Homer	AACCGGAAGT	1e-9	-2.080e+01	0.0000	14664.0	14.41%	13761.7	13.76%
n-Myc(bHLH)/mES-nMyc-ChIP-Seq(GSE11431)/Homer	VRCCACGTGG	1e-8	-1.969e+01	0.0000	6400.0	6.29%	5857.8	5.86%
ZNF675(Zf)/HEK293-ZNF675.GFP-ChIP-Seq(GSE58341)/Homer	ARGAGGMCAAAATGW	1e-8	-1.953e+01	0.0000	1342.0	1.32%	1122.4	1.12%
c-Myc(bHLH)/LNCAP-cMyc-ChIP-Seq(Unpublished)/Homer	VCCACGTG	1e-8	-1.942e+01	0.0000	4228.0	4.16%	3804.7	3.80%
NRF(NRF)/Promoter/Homer	STGCGCATGCGC	1e-8	-1.924e+01	0.0000	1833.0	1.80%	1572.1	1.57%
ELF1(ETS)/Jurkat-ELF1-ChIP-Seq(SRA014231)/Homer	AVCCGGAAGT	1e-8	-1.901e+01	0.0000	5667.0	5.57%	5169.4	5.17%
Ascl1(bHLH)/NeuralTubes-Ascl1-ChIP-Seq(GSE55840)/Homer	NNVVCAGCTGBN	1e-7	-1.808e+01	0.0000	18666.0	18.35%	17681.0	17.68%
Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer	CCATTGTATGCAAAT	1e-7	-1.734e+01	0.0000	1095.0	1.08%	910.1	0.91%
RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	GCTGTGGTTW	1e-7	-1.723e+01	0.0000	6358.0	6.25%	5848.8	5.85%
HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer	NCYAATAAAA	1e-7	-1.675e+01	0.0000	9645.0	9.48%	9000.9	9.00%
FOXM1(Forkhead)/MCF7-FOXM1-ChIP-Seq(GSE72977)/Homer	TRTTTACTTW	1e-7	-1.635e+01	0.0000	9306.0	9.15%	8681.8	8.68%
Egr2(Zf)/Thymocytes-Egr2-ChIP-Seq(GSE34254)/Homer	NGCGTGGGCGGR	1e-7	-1.626e+01	0.0000	2024.0	1.99%	1769.7	1.77%
NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer	GGAAATTCCC	1e-6	-1.544e+01	0.0000	566.0	0.56%	446.9	0.45%
RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer	NWAACCACADNN	1e-6	-1.539e+01	0.0000	7072.0	6.95%	6555.1	6.55%
YY1(Zf)/Promoter/Homer	CAAGATGGCGGC	1e-6	-1.446e+01	0.0000	795.0	0.78%	654.0	0.65%
T1ISRE(IRF)/ThioMac-Ifnb-Expression/Homer	ACTTTCGTTTCT	1e-6	-1.401e+01	0.0000	149.0	0.15%	96.2	0.10%
Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer	SCTGTCAMTCAN	1e-5	-1.321e+01	0.0000	2029.0	1.99%	1798.7	1.80%
Brachyury(T-box)/Mesoendoderm-Brachyury-ChIP-exo(GSE54963)/Homer	ANTTMRCASBNNNGTGYKAAN	1e-5	-1.311e+01	0.0000	2275.0	2.24%	2029.4	2.03%
TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer	ACWTCAAAGG	1e-5	-1.262e+01	0.0000	636.0	0.63%	520.2	0.52%
E2F(E2F)/Hela-CellCycle-Expression/Homer	TTSGCGCGAAAA	1e-5	-1.221e+01	0.0000	578.0	0.57%	470.9	0.47%
Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	MACAGGAAGT	1e-5	-1.217e+01	0.0000	2676.0	2.63%	2415.9	2.42%
NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer	WGGGGATTTCCC	1e-5	-1.216e+01	0.0000	5148.0	5.06%	4763.5	4.76%
Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer	GGCCATAAATCA	1e-5	-1.196e+01	0.0000	3930.0	3.86%	3605.8	3.61%
FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer	WAAGTAAACA	1e-5	-1.172e+01	0.0000	8780.0	8.63%	8256.4	8.26%
Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer	MTGATGCAAT	1e-5	-1.164e+01	0.0000	2457.0	2.42%	2214.1	2.21%
GFX(?)/Promoter/Homer	ATTCTCGCGAGA	1e-5	-1.157e+01	0.0000	132.0	0.13%	87.1	0.09%
ZNF322(Zf)/HEK293-ZNF322.GFP-ChIP-Seq(GSE58341)/Homer	GAGCCTGGTACTGWGCCTGR	1e-4	-1.080e+01	0.0000	3702.0	3.64%	3403.5	3.40%
Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer	AGGTGHCAGACA	1e-4	-1.029e+01	0.0001	1758.0	1.73%	1570.5	1.57%
Pax7(Paired,Homeobox),long/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCHGATTAC	1e-4	-1.007e+01	0.0001	185.0	0.18%	134.2	0.13%
RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer	TAGGGCAAAGGTCA	1e-4	-9.641e+00	0.0001	11533.0	11.34%	10960.2	10.96%
E2F4(E2F)/K562-E2F4-ChIP-Seq(GSE31477)/Homer	GGCGGGAAAH	1e-4	-9.393e+00	0.0001	5385.0	5.29%	5033.1	5.03%
PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer	GSCTGTCACTCA	1e-3	-8.783e+00	0.0002	717.0	0.70%	614.1	0.61%
AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer	ATGCCCTGAGGC	1e-3	-8.231e+00	0.0004	10789.0	10.60%	10274.7	10.27%
Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer	TGACCTTTNCNT	1e-3	-8.000e+00	0.0005	1340.0	1.32%	1199.1	1.20%
E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer	GGCGGGAARN	1e-3	-7.826e+00	0.0006	6706.0	6.59%	6334.4	6.33%
GRHL2(CP2)/HBE-GRHL2-ChIP-Seq(GSE46194)/Homer	AAACYKGTTWDACMRGTTTB	1e-3	-7.423e+00	0.0009	3136.0	3.08%	2910.6	2.91%
Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer	ATATGCAAAT	1e-3	-7.336e+00	0.0010	2613.0	2.57%	2412.2	2.41%
Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer	VGCTGWCAVB	1e-3	-6.967e+00	0.0015	16198.0	15.92%	15568.2	15.57%
EBNA1(EBV-virus)/Raji-EBNA1-ChIP-Seq(GSE30709)/Homer	GGYAGCAYDTGCTDCCCNNN	1e-2	-6.830e+00	0.0017	152.0	0.15%	115.3	0.12%
Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer	GTCATGCHTGRCTGS	1e-2	-6.437e+00	0.0024	4201.0	4.13%	3948.1	3.95%
Klf9(Zf)/GBM-Klf9-ChIP-Seq(GSE62211)/Homer	GCCACRCCCACY	1e-2	-6.075e+00	0.0035	4635.0	4.56%	4373.2	4.37%
KLF10(Zf)/HEK293-KLF10.GFP-ChIP-Seq(GSE58341)/Homer	GGGGGTGTGTCC	1e-2	-5.762e+00	0.0048	5668.0	5.57%	5378.0	5.38%
ZBTB33(Zf)/GM12878-ZBTB33-ChIP-Seq(GSE32465)/Homer	GGVTCTCGCGAGAAC	1e-2	-5.710e+00	0.0050	388.0	0.38%	331.9	0.33%
PU.1(ETS)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	AGAGGAAGTG	1e-2	-5.246e+00	0.0079	4682.0	4.60%	4436.9	4.44%
Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer	TBGCACGCAA	1e-2	-5.153e+00	0.0086	5843.0	5.74%	5561.8	5.56%
ZNF415(Zf)/HEK293-ZNF415.GFP-ChIP-Seq(GSE58341)/Homer	GRTGMTRGAGCC	1e-2	-5.134e+00	0.0087	6016.0	5.91%	5729.2	5.73%
SpiB(ETS)/OCILY3-SPIB-ChIP-Seq(GSE56857)/Homer	AAAGRGGAAGTG	1e-2	-5.009e+00	0.0099	2377.0	2.34%	2221.9	2.22%
Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer	GKVTCADRTTWC	1e-1	-4.578e+00	0.0151	1918.0	1.89%	1788.5	1.79%
PRDM14(Zf)/H1-PRDM14-ChIP-Seq(GSE22767)/Homer	RGGTCTCTAACY	1e-1	-4.444e+00	0.0172	2392.0	2.35%	2245.8	2.25%
HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer	CARRGKBCAAAGTYCA	1e-1	-4.361e+00	0.0186	4063.0	3.99%	3858.9	3.86%
ZNF669(Zf)/HEK293-ZNF669.GFP-ChIP-Seq(GSE58341)/Homer	GARTGGTCATCGCCC	1e-1	-4.158e+00	0.0227	588.0	0.58%	528.9	0.53%
MafF(bZIP)/HepG2-MafF-ChIP-Seq(GSE31477)/Homer	HWWGTCAGCAWWTTT	1e-1	-3.943e+00	0.0280	2533.0	2.49%	2390.3	2.39%
ETS:E-box(ETS,bHLH)/HPC7-Scl-ChIP-Seq(GSE22178)/Homer	AGGAARCAGCTG	1e-1	-3.430e+00	0.0465	842.0	0.83%	776.1	0.78%
Mouse_Recombination_Hotspot(Zf)/Testis-DMC1-ChIP-Seq(GSE24438)/Homer	ACTYKNATTCGTGNTACTTC	1e-1	-3.088e+00	0.0652	520.0	0.51%	474.6	0.47%
p53(p53)/Saos-p53-ChIP-Seq(GSE15780)/Homer	RRCATGYCYRGRCATGYYYN	1e-1	-2.821e+00	0.0845	682.0	0.67%	631.2	0.63%
p53(p53)/Saos-p53-ChIP-Seq/Homer	RRCATGYCYRGRCATGYYYN	1e-1	-2.821e+00	0.0845	682.0	0.67%	631.2	0.63%
PPARE(NR),DR1/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer	TGACCTTTGCCCCA	1e0	-2.270e+00	0.1459	9252.0	9.09%	8981.6	8.98%
ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer	ATTTCCCAGVAKSCY	1e0	-1.897e+00	0.2108	3551.0	3.49%	3432.0	3.43%
Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer	CAAAGGTCAG	1e0	-1.829e+00	0.2247	23728.0	23.32%	23193.4	23.19%
RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer	RGGTCADNNAGAGGTCAV	1e0	-1.792e+00	0.2321	244.0	0.24%	226.0	0.23%
p63(p53)/Keratinocyte-p63-ChIP-Seq(GSE17611)/Homer	NNDRCATGYCYNRRCATGYH	1e0	-1.419e+00	0.3355	3161.0	3.11%	3069.7	3.07%
ZNF382(Zf)/HEK293-ZNF382.GFP-ChIP-Seq(GSE58341)/Homer	GNCTGTASTRNTGBCTCHTT	1e0	-1.267e+00	0.3889	183.0	0.18%	172.2	0.17%
ZNF317(Zf)/HEK293-ZNF317.GFP-ChIP-Seq(GSE58341)/Homer	GTCWGCTGTYYCTCT	1e0	-1.186e+00	0.4202	726.0	0.71%	700.2	0.70%
DMRT1(DM)/Testis-DMRT1-ChIP-Seq(GSE64892)/Homer	TWGHWACAWTGTWDC	1e0	-1.071e+00	0.4691	1725.0	1.70%	1679.1	1.68%
Pax7(Paired,Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCAATTA	1e0	-1.066e+00	0.4693	677.0	0.67%	655.2	0.66%
bHLHE40(bHLH)/HepG2-BHLHE40-ChIP-Seq(GSE31477)/Homer	KCACGTGMCN	1e0	-9.759e-01	0.5116	2499.0	2.46%	2441.1	2.44%
c-Myc(bHLH)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	VVCCACGTGG	1e0	-9.724e-01	0.5116	4511.0	4.43%	4414.5	4.41%
PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GCAGCCAAGCRTGACH	1e0	-8.752e-01	0.5610	4264.0	4.19%	4178.2	4.18%
Atf2(bZIP)/3T3L1-Atf2-ChIP-Seq(GSE56872)/Homer	NRRTGACGTCAT	1e0	-8.705e-01	0.5612	2724.0	2.68%	2667.5	2.67%
ZSCAN22(Zf)/HEK293-ZSCAN22.GFP-ChIP-Seq(GSE58341)/Homer	SMCAGTCWGAKGGAGGAGGC	1e0	-8.643e-01	0.5624	829.0	0.81%	809.0	0.81%
GATA3(Zf),DR8/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATSTNDNNDSAGATAASN	1e0	-8.136e-01	0.5892	404.0	0.40%	394.4	0.39%
Chop(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	ATTGCATCAT	1e0	-7.621e-01	0.6177	1779.0	1.75%	1745.2	1.75%
ETS:RUNX(ETS,Runt)/Jurkat-RUNX1-ChIP-Seq(GSE17954)/Homer	RCAGGATGTGGT	1e0	-7.311e-01	0.6346	844.0	0.83%	828.0	0.83%
BMAL1(bHLH)/Liver-Bmal1-ChIP-Seq(GSE39860)/Homer	GNCACGTG	1e0	-7.090e-01	0.6461	15499.0	15.23%	15233.8	15.23%
FXR(NR),IR1/Liver-FXR-ChIP-Seq(Chong_et_al.)/Homer	AGGTCANTGACCTB	1e0	-7.066e-01	0.6461	3805.0	3.74%	3740.0	3.74%
Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer	KTGACCTTGA	1e0	-6.952e-01	0.6497	5500.0	5.41%	5406.8	5.41%
DMRT6(DM)/Testis-DMRT6-ChIP-Seq(GSE60440)/Homer	YDGHTACAWTGTADC	1e0	-6.893e-01	0.6509	1344.0	1.32%	1321.6	1.32%
ZBTB12(Zf)/HEK293-ZBTB12.GFP-ChIP-Seq(GSE58341)/Homer	NGNTCTAGAACCNGV	1e0	-6.786e-01	0.6552	3454.0	3.40%	3396.8	3.40%
ZNF528(Zf)/HEK293-ZNF528.GFP-ChIP-Seq(GSE58341)/Homer	AGAAATGACTTCCCT	1e0	-4.770e-01	0.7984	55.0	0.05%	56.1	0.06%
GATA:SCL(Zf,bHLH)/Ter119-SCL-ChIP-Seq(GSE18720)/Homer	CRGCTGBNGNSNNSAGATAA	1e0	-3.485e-01	0.9042	819.0	0.81%	820.3	0.82%
p53(p53)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	ACATGCCCGGGCAT	1e0	-3.457e-01	0.9042	249.0	0.24%	253.7	0.25%
GATA(Zf),IR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NAGATWNBNATCTNN	1e0	-1.723e-01	1.0000	422.0	0.41%	435.1	0.44%
HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer	GYCATCMATCAT	1e0	-1.713e-01	1.0000	628.0	0.62%	642.3	0.64%
ZNF519(Zf)/HEK293-ZNF519.GFP-ChIP-Seq(GSE58341)/Homer	GAGSCCGAGC	1e0	-6.290e-02	1.0000	2847.0	2.80%	2879.2	2.88%
ZNF16(Zf)/HEK293-ZNF16.GFP-ChIP-Seq(GSE58341)/Homer	MACCTTCYATGGCTCCCTAKTGCCY	1e0	-4.478e-02	1.0000	90.0	0.09%	105.5	0.11%
CEBP:CEBP(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	NTNATGCAAYMNNHTGMAAY	1e0	-3.742e-02	1.0000	1356.0	1.33%	1398.7	1.40%
PAX5(Paired,Homeobox),condensed/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GTCACGCTCSCTGM	1e0	-3.406e-02	1.0000	882.0	0.87%	921.6	0.92%
HIF2a(bHLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer	GCACGTACCC	1e0	-3.136e-02	1.0000	2681.0	2.64%	2730.7	2.73%
GLI3(Zf)/Limb-GLI3-ChIP-Chip(GSE11077)/Homer	CGTGGGTGGTCC	1e0	-3.112e-02	1.0000	1028.0	1.01%	1070.3	1.07%
E2F7(E2F)/Hela-E2F7-ChIP-Seq(GSE32673)/Homer	VDTTTCCCGCCA	1e0	-1.314e-02	1.0000	1262.0	1.24%	1319.0	1.32%
E2F1(E2F)/Hela-E2F1-ChIP-Seq(GSE22478)/Homer	CWGGCGGGAA	1e0	-4.661e-03	1.0000	2871.0	2.82%	2959.5	2.96%
Pax7(Paired,Homeobox),longest/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	NTAATTDGCYAATTANNWWD	1e0	-3.679e-03	1.0000	202.0	0.20%	238.1	0.24%
FOXA1:AR(Forkhead,NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	AGTAAACAAAAAAGAACAND	1e0	-3.234e-03	1.0000	593.0	0.58%	650.0	0.65%
ZNF692(Zf)/HEK293-ZNF692.GFP-ChIP-Seq(GSE58341)/Homer	GTGGGCCCCA	1e0	-2.411e-03	1.0000	1602.0	1.57%	1687.5	1.69%
ZNF41(Zf)/HEK293-ZNF41.GFP-ChIP-Seq(GSE58341)/Homer	CCTCATGGTGYCYTWYTCCCTTGTG	1e0	-2.362e-03	1.0000	211.0	0.21%	250.0	0.25%
NFkB-p50,p52(RHD)/Monocyte-p50-ChIP-Chip(Schreiber_et_al.)/Homer	GGGGGAATCCCC	1e0	-1.193e-03	1.0000	1121.0	1.10%	1204.4	1.20%
Hnf1(Homeobox)/Liver-Foxa2-Chip-Seq(GSE25694)/Homer	GGTTAAWCATTAA	1e0	-9.250e-04	1.0000	873.0	0.86%	951.5	0.95%
c-Jun-CRE(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	ATGACGTCATCY	1e0	-8.390e-04	1.0000	2518.0	2.48%	2631.2	2.63%
HIF-1a(bHLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer	TACGTGCV	1e0	-8.000e-04	1.0000	1989.0	1.96%	2095.7	2.10%
Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer	GYMATAAAAH	1e0	-6.570e-04	1.0000	5147.0	5.06%	5283.2	5.28%
HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer	NTATYGATCH	1e0	-2.300e-05	1.0000	3570.0	3.51%	3749.3	3.75%
Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer	NYTAATCCYB	1e0	-1.600e-05	1.0000	6780.0	6.66%	6994.6	6.99%
TR4(NR),DR1/Hela-TR4-ChIP-Seq(GSE24685)/Homer	GAGGTCAAAGGTCA	1e0	-1.400e-05	1.0000	666.0	0.65%	766.5	0.77%
Reverb(NR),DR2/RAW-Reverba.biotin-ChIP-Seq(GSE45914)/Homer	GTRGGTCASTGGGTCA	1e0	-4.000e-06	1.0000	1314.0	1.29%	1456.2	1.46%
ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer	WDNCTGGGCA	1e0	-3.000e-06	1.0000	19041.0	18.72%	19275.4	19.27%
RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer	AGGTCAAGGTCA	1e0	-1.000e-06	1.0000	189.0	0.19%	257.2	0.26%
VDR(NR),DR3/GM10855-VDR+vitD-ChIP-Seq(GSE22484)/Homer	ARAGGTCANWGAGTTCANNN	1e0	-1.000e-06	1.0000	1533.0	1.51%	1697.4	1.70%
HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer	RTACGTGC	1e0	-0.000e+00	1.0000	8866.0	8.71%	9192.8	9.19%
ZNF165(Zf)/WHIM12-ZNF165-ChIP-Seq(GSE65937)/Homer	AAGGKGRCGCAGGCA	1e0	-0.000e+00	1.0000	1559.0	1.53%	1759.1	1.76%
ZFP3(Zf)/HEK293-ZFP3.GFP-ChIP-Seq(GSE58341)/Homer	GGGTTTTGAAGGATGARTAGGAGTT	1e0	-0.000e+00	1.0000	12.0	0.01%	44.9	0.04%
Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer	ATTAACACCT	1e0	-0.000e+00	1.0000	19136.0	18.81%	19547.1	19.55%
GATA3(Zf),DR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATGKDGAGATAAG	1e0	-0.000e+00	1.0000	413.0	0.41%	559.6	0.56%
KLF14(Zf)/HEK293-KLF14.GFP-ChIP-Seq(GSE58341)/Homer	RGKGGGCGKGGC	1e0	-0.000e+00	1.0000	21874.0	21.50%	22424.8	22.42%
CEBP(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	ATTGCGCAAC	1e0	-0.000e+00	1.0000	6562.0	6.45%	7079.6	7.08%
ZBTB18(Zf)/HEK293-ZBTB18.GFP-ChIP-Seq(GSE58341)/Homer	AACATCTGGA	1e0	-0.000e+00	1.0000	4441.0	4.37%	4916.3	4.92%
Atf1(bZIP)/K562-ATF1-ChIP-Seq(GSE31477)/Homer	GATGACGTCA	1e0	0.000e+00	1.0000	5731.0	5.63%	6399.6	6.40%
Atf7(bZIP)/3T3L1-Atf7-ChIP-Seq(GSE56872)/Homer	NGRTGACGTCAY	1e0	0.000e+00	1.0000	3935.0	3.87%	4683.4	4.68%
Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer	TTRAGTGSYK	1e0	0.000e+00	1.0000	22822.0	22.43%	27913.5	27.91%
CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer	GCTAATCC	1e0	0.000e+00	1.0000	21934.0	21.56%	26202.3	26.20%
RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer	AGGTCAAGGTCA	1e0	0.000e+00	1.0000	859.0	0.84%	1107.3	1.11%
E2A(bHLH)/proBcell-E2A-ChIP-Seq(GSE21978)/Homer	DNRCAGCTGY	1e0	0.000e+00	1.0000	15954.0	15.68%	19745.5	19.74%
E2A(bHLH),near_PU.1/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	NVCACCTGBN	1e0	0.000e+00	1.0000	11608.0	11.41%	18215.6	18.21%
EKLF(Zf)/Erythrocyte-Klf1-ChIP-Seq(GSE20478)/Homer	NWGGGTGTGGCY	1e0	0.000e+00	1.0000	1520.0	1.49%	2216.9	2.22%
Gata2(Zf)/K562-GATA2-ChIP-Seq(GSE18829)/Homer	BBCTTATCTS	1e0	0.000e+00	1.0000	3456.0	3.40%	4608.5	4.61%
GATA(Zf),IR3/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NNNNNBAGATAWYATCTVHN	1e0	0.000e+00	1.0000	898.0	0.88%	1185.7	1.19%
GATA3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATAASR	1e0	0.000e+00	1.0000	9472.0	9.31%	11904.9	11.90%
Gata4(Zf)/Heart-Gata4-ChIP-Seq(GSE35151)/Homer	NBWGATAAGR	1e0	0.000e+00	1.0000	6026.0	5.92%	7369.7	7.37%
Gata1(Zf)/K562-GATA1-ChIP-Seq(GSE18829)/Homer	SAGATAAGRV	1e0	0.000e+00	1.0000	3008.0	2.96%	4111.2	4.11%
Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer	MAATCACTGC	1e0	0.000e+00	1.0000	7160.0	7.04%	8592.9	8.59%
GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer	RGGATTAR	1e0	0.000e+00	1.0000	10641.0	10.46%	16700.6	16.70%
HEB(bHLH)/mES-Heb-ChIP-Seq(GSE53233)/Homer	VCAGCTGBNN	1e0	0.000e+00	1.0000	21121.0	20.76%	24134.5	24.13%
Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer	GCCACACCCA	1e0	0.000e+00	1.0000	3612.0	3.55%	4716.3	4.72%
KLF5(Zf)/LoVo-KLF5-ChIP-Seq(GSE49402)/Homer	DGGGYGKGGC	1e0	0.000e+00	1.0000	15343.0	15.08%	16598.3	16.60%
LXRE(NR),DR4/RAW-LXRb.biotin-ChIP-Seq(GSE21512)/Homer	RGGTTACTANAGGTCA	1e0	0.000e+00	1.0000	598.0	0.59%	1722.1	1.72%
Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529)/Homer	CYAAAAATAG	1e0	0.000e+00	1.0000	4493.0	4.42%	6445.8	6.45%
Mef2b(MADS)/HEK293-Mef2b.V5-ChIP-Seq(GSE67450)/Homer	GCTATTTTTGGM	1e0	0.000e+00	1.0000	8503.0	8.36%	9982.6	9.98%
Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer	DCYAAAAATAGM	1e0	0.000e+00	1.0000	4608.0	4.53%	6954.0	6.95%
Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer	RSCACTYRAG	1e0	0.000e+00	1.0000	29861.0	29.35%	32126.2	32.12%
Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer	BTBRAGTGSN	1e0	0.000e+00	1.0000	20957.0	20.60%	24283.9	24.28%
Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer	RRSCACTYAA	1e0	0.000e+00	1.0000	23091.0	22.70%	25057.1	25.06%
Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer	AAGCACTTAA	1e0	0.000e+00	1.0000	23705.0	23.30%	24682.8	24.68%
NPAS2(bHLH)/Liver-NPAS2-ChIP-Seq(GSE39860)/Homer	KCCACGTGAC	1e0	0.000e+00	1.0000	9374.0	9.21%	10119.4	10.12%
Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer	TAATCCCN	1e0	0.000e+00	1.0000	42931.0	42.20%	43991.5	43.99%
Ptf1a(bHLH)/Panc1-Ptf1a-ChIP-Seq(GSE47459)/Homer	ACAGCTGTTN	1e0	0.000e+00	1.0000	28359.0	27.88%	30875.7	30.87%
Srebp1a(bHLH)/HepG2-Srebp1a-ChIP-Seq(GSE31477)/Homer	RTCACSCCAY	1e0	0.000e+00	1.0000	1888.0	1.86%	2638.8	2.64%
Srebp2(bHLH)/HepG2-Srebp2-ChIP-Seq(GSE31477)/Homer	CGGTCACSCCAC	1e0	0.000e+00	1.0000	1294.0	1.27%	2105.9	2.11%
Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer	AGGTGTGAAM	1e0	0.000e+00	1.0000	8136.0	8.00%	9418.4	9.42%
Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer	AGGTGTCA	1e0	0.000e+00	1.0000	31985.0	31.44%	35439.7	35.44%
THRa(NR)/C17.2-THRa-ChIP-Seq(GSE38347)/Homer	GGTCANYTGAGGWCA	1e0	0.000e+00	1.0000	4379.0	4.30%	5712.5	5.71%
ZNF136(Zf)/HEK293-ZNF136.GFP-ChIP-Seq(GSE58341)/Homer	YTKGATAHAGTATTCTWGGTNGGCA	1e0	0.000e+00	1.0000	686.0	0.67%	1028.0	1.03%