Motif Name	Consensus	P-value	Log P-value	q-value (Benjamini)	# of Target Sequences with Motif(of 100385)	% of Target Sequences with Motif	# of Background Sequences with Motif(of 97505)	% of Background Sequences with Motif
CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	AYAGTGCCMYCTRGTGGCCA	1e-5282	-1.216e+04	0.0000	8854.0	8.82%	926.3	0.95%
BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer	CNNBRGCGCCCCCTGSTGGC	1e-3049	-7.022e+03	0.0000	9424.0	9.39%	2065.8	2.12%
SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer	AVCAGCTG	1e-1116	-2.571e+03	0.0000	60608.0	60.40%	47908.9	49.13%
Ap4(bHLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer	NAHCAGCTGD	1e-998	-2.298e+03	0.0000	22060.0	21.98%	13703.6	14.05%
Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer	VCAGCTGYTG	1e-981	-2.259e+03	0.0000	19305.0	19.24%	11565.8	11.86%
Tcf21(bHLH)/ArterySmoothMuscle-Tcf21-ChIP-Seq(GSE61369)/Homer	NAACAGCTGG	1e-959	-2.209e+03	0.0000	18210.0	18.15%	10776.8	11.05%
NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer	YTGCCAAG	1e-934	-2.151e+03	0.0000	27099.0	27.01%	18096.8	18.56%
Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer	VNRVCAGCTGGY	1e-932	-2.148e+03	0.0000	19609.0	19.54%	11962.9	12.27%
Ascl1(bHLH)/NeuralTubes-Ascl1-ChIP-Seq(GSE55840)/Homer	NNVVCAGCTGBN	1e-813	-1.873e+03	0.0000	27225.0	27.13%	18707.1	19.18%
Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer	RCCATMTGTT	1e-729	-1.681e+03	0.0000	26913.0	26.82%	18815.7	19.29%
NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer	GCCATCTGTT	1e-724	-1.667e+03	0.0000	14200.0	14.15%	8403.7	8.62%
MyoG(bHLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer	AACAGCTG	1e-724	-1.667e+03	0.0000	18685.0	18.62%	11958.9	12.26%
MyoD(bHLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer	RRCAGCTGYTSY	1e-712	-1.640e+03	0.0000	15210.0	15.16%	9228.7	9.46%
Myf5(bHLH)/GM-Myf5-ChIP-Seq(GSE24852)/Homer	BAACAGCTGT	1e-681	-1.569e+03	0.0000	13052.0	13.01%	7654.7	7.85%
RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer	CGGTTGCCATGGCAAC	1e-601	-1.385e+03	0.0000	2175.0	2.17%	534.9	0.55%
Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer	ADBTAATTAR	1e-566	-1.304e+03	0.0000	18882.0	18.82%	12765.4	13.09%
Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer	GTTGCCATGGCAACM	1e-550	-1.269e+03	0.0000	2263.0	2.26%	616.6	0.63%
Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer	TAATTAGN	1e-524	-1.208e+03	0.0000	12648.0	12.60%	7871.5	8.07%
X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	GGTTGCCATGGCAA	1e-480	-1.106e+03	0.0000	2277.0	2.27%	690.0	0.71%
Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer	GKTAATGR	1e-478	-1.103e+03	0.0000	27445.0	27.35%	20592.5	21.12%
NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer	CYTGGCABNSTGCCAR	1e-446	-1.027e+03	0.0000	7303.0	7.28%	4038.6	4.14%
Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer	TGTCANYT	1e-427	-9.845e+02	0.0000	37166.0	37.04%	29733.4	30.49%
Lhx1(Homeobox)/EmbryoCarcinoma-Lhx1-ChIP-Seq(GSE70957)/Homer	NNYTAATTAR	1e-417	-9.615e+02	0.0000	12874.0	12.83%	8475.8	8.69%
Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	CTGGCAGSCTGCCA	1e-374	-8.614e+02	0.0000	7257.0	7.23%	4220.4	4.33%
Fra1(bZIP)/BT549-Fra1-ChIP-Seq(GSE46166)/Homer	NNATGASTCATH	1e-360	-8.309e+02	0.0000	6575.0	6.55%	3750.2	3.85%
Ptf1a(bHLH)/Panc1-Ptf1a-ChIP-Seq(GSE47459)/Homer	ACAGCTGTTN	1e-349	-8.051e+02	0.0000	39343.0	39.21%	32356.1	33.18%
Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	KGTTGCCATGGCAA	1e-348	-8.017e+02	0.0000	3382.0	3.37%	1528.6	1.57%
AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	VTGACTCATC	1e-317	-7.315e+02	0.0000	8576.0	8.55%	5441.3	5.58%
Atf3(bZIP)/GBM-ATF3-ChIP-Seq(GSE33912)/Homer	DATGASTCATHN	1e-310	-7.155e+02	0.0000	7615.0	7.59%	4713.5	4.83%
Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	RGCCATTAAC	1e-301	-6.951e+02	0.0000	44739.0	44.59%	37860.8	38.82%
Fosl2(bZIP)/3T3L1-Fosl2-ChIP-Seq(GSE56872)/Homer	NATGASTCABNN	1e-276	-6.377e+02	0.0000	4132.0	4.12%	2203.2	2.26%
BATF(bZIP)/Th17-BATF-ChIP-Seq(GSE39756)/Homer	DATGASTCAT	1e-269	-6.204e+02	0.0000	7264.0	7.24%	4597.9	4.71%
Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer	CTAATKGV	1e-268	-6.175e+02	0.0000	19677.0	19.61%	15093.9	15.48%
Mef2d(MADS)/Retina-Mef2d-ChIP-Seq(GSE61391)/Homer	GCTATTTTTAGC	1e-264	-6.083e+02	0.0000	2958.0	2.95%	1417.4	1.45%
Oct6(POU,Homeobox)/NPC-Oct6-ChIP-Seq(GSE35496)/Homer	WATGCAAATGAG	1e-241	-5.552e+02	0.0000	5202.0	5.18%	3103.1	3.18%
Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer	SCCTAGCAACAG	1e-240	-5.549e+02	0.0000	4415.0	4.40%	2512.7	2.58%
AMYB(HTH)/Testes-AMYB-ChIP-Seq(GSE44588)/Homer	TGGCAGTTGG	1e-240	-5.547e+02	0.0000	16036.0	15.98%	12090.7	12.40%
Jun-AP1(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	GATGASTCATCN	1e-235	-5.416e+02	0.0000	3137.0	3.13%	1606.7	1.65%
MYB(HTH)/ERMYB-Myb-ChIPSeq(GSE22095)/Homer	GGCVGTTR	1e-226	-5.218e+02	0.0000	18087.0	18.02%	13991.9	14.35%
HEB(bHLH)/mES-Heb-ChIP-Seq(GSE53233)/Homer	VCAGCTGBNN	1e-222	-5.125e+02	0.0000	30214.0	30.11%	25002.6	25.64%
Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	TATGCWAATBAV	1e-220	-5.069e+02	0.0000	4007.0	3.99%	2274.5	2.33%
BMYB(HTH)/Hela-BMYB-ChIP-Seq(GSE27030)/Homer	NHAACBGYYV	1e-212	-4.888e+02	0.0000	15344.0	15.29%	11685.6	11.98%
MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer	TGCTGACTCA	1e-208	-4.810e+02	0.0000	10036.0	10.00%	7149.2	7.33%
ZBTB18(Zf)/HEK293-ZBTB18.GFP-ChIP-Seq(GSE58341)/Homer	AACATCTGGA	1e-204	-4.708e+02	0.0000	7790.0	7.76%	5308.5	5.44%
Bach2(bZIP)/OCILy7-Bach2-ChIP-Seq(GSE44420)/Homer	TGCTGAGTCA	1e-197	-4.539e+02	0.0000	2712.0	2.70%	1403.7	1.44%
Tgif1(Homeobox)/mES-Tgif1-ChIP-Seq(GSE55404)/Homer	YTGWCADY	1e-162	-3.750e+02	0.0000	31746.0	31.64%	27048.7	27.74%
NFY(CCAAT)/Promoter/Homer	RGCCAATSRG	1e-156	-3.604e+02	0.0000	8706.0	8.68%	6338.8	6.50%
Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer	TWGTCTGV	1e-148	-3.426e+02	0.0000	31832.0	31.72%	27294.5	27.99%
Fli1(ETS)/CD8-FLI-ChIP-Seq(GSE20898)/Homer	NRYTTCCGGH	1e-147	-3.396e+02	0.0000	13225.0	13.18%	10317.0	10.58%
NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	ATTTTCCATT	1e-144	-3.330e+02	0.0000	9035.0	9.00%	6695.3	6.87%
AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer	CCAGGAACAG	1e-141	-3.267e+02	0.0000	40888.0	40.75%	35939.4	36.85%
Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAW	1e-128	-2.951e+02	0.0000	5377.0	5.36%	3719.7	3.81%
RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer	AAYTAGGTCA	1e-126	-2.916e+02	0.0000	1587.0	1.58%	793.1	0.81%
E2A(bHLH)/proBcell-E2A-ChIP-Seq(GSE21978)/Homer	DNRCAGCTGY	1e-126	-2.913e+02	0.0000	24253.0	24.17%	20511.2	21.03%
Bach1(bZIP)/K562-Bach1-ChIP-Seq(GSE31477)/Homer	AWWNTGCTGAGTCAT	1e-121	-2.800e+02	0.0000	911.0	0.91%	363.3	0.37%
ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer	ACAGGAAGTG	1e-118	-2.739e+02	0.0000	18146.0	18.08%	14996.2	15.38%
Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	CACAGCAGGGGG	1e-118	-2.727e+02	0.0000	8616.0	8.59%	6518.3	6.68%
Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer	YCATYAATCA	1e-117	-2.705e+02	0.0000	9374.0	9.34%	7182.3	7.37%
Foxo1(Forkhead)/RAW-Foxo1-ChIP-Seq(Fan_et_al.)/Homer	CTGTTTAC	1e-114	-2.636e+02	0.0000	19860.0	19.79%	16610.7	17.03%
Stat3+il21(Stat)/CD4-Stat3-ChIP-Seq(GSE19198)/Homer	SVYTTCCNGGAARB	1e-109	-2.511e+02	0.0000	7468.0	7.44%	5597.8	5.74%
NF-E2(bZIP)/K562-NFE2-ChIP-Seq(GSE31477)/Homer	GATGACTCAGCA	1e-103	-2.379e+02	0.0000	942.0	0.94%	413.1	0.42%
Fox:Ebox(Forkhead,bHLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer	NNNVCTGWGYAAACASN	1e-96	-2.230e+02	0.0000	9234.0	9.20%	7227.5	7.41%
PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer	ADGGYAGYAGCATCT	1e-96	-2.224e+02	0.0000	6091.0	6.07%	4506.9	4.62%
Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer	VGCTGWCAVB	1e-92	-2.139e+02	0.0000	18610.0	18.55%	15721.8	16.12%
Elk4(ETS)/Hela-Elk4-ChIP-Seq(GSE31477)/Homer	NRYTTCCGGY	1e-88	-2.036e+02	0.0000	6727.0	6.70%	5110.9	5.24%
Nrf2(bZIP)/Lymphoblast-Nrf2-ChIP-Seq(GSE37589)/Homer	HTGCTGAGTCAT	1e-88	-2.035e+02	0.0000	794.0	0.79%	346.7	0.36%
PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer	VAGRACAKNCTGTBC	1e-87	-2.012e+02	0.0000	21628.0	21.55%	18579.8	19.05%
STAT4(Stat)/CD4-Stat4-ChIP-Seq(GSE22104)/Homer	NYTTCCWGGAAR	1e-85	-1.959e+02	0.0000	9280.0	9.25%	7372.2	7.56%
SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer	ASWTCCTGBT	1e-84	-1.953e+02	0.0000	11166.0	11.13%	9054.5	9.28%
Bcl6(Zf)/Liver-Bcl6-ChIP-Seq(GSE31578)/Homer	NNNCTTTCCAGGAAA	1e-80	-1.856e+02	0.0000	13366.0	13.32%	11082.1	11.36%
Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer	GGTGYTGACAGS	1e-79	-1.841e+02	0.0000	2580.0	2.57%	1690.0	1.73%
Etv2(ETS)/ES-ER71-ChIP-Seq(GSE59402)/Homer(0.967)	NNAYTTCCTGHN	1e-79	-1.831e+02	0.0000	10360.0	10.32%	8387.9	8.60%
ETS1(ETS)/Jurkat-ETS1-ChIP-Seq(GSE17954)/Homer	ACAGGAAGTG	1e-79	-1.824e+02	0.0000	11676.0	11.64%	9571.6	9.82%
Stat3(Stat)/mES-Stat3-ChIP-Seq(GSE11431)/Homer	CTTCCGGGAA	1e-76	-1.753e+02	0.0000	5453.0	5.43%	4105.7	4.21%
ETV1(ETS)/GIST48-ETV1-ChIP-Seq(GSE22441)/Homer	AACCGGAAGT	1e-75	-1.736e+02	0.0000	15465.0	15.41%	13058.5	13.39%
Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	HTTTCCCASG	1e-64	-1.484e+02	0.0000	15358.0	15.31%	13106.7	13.44%
OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAACAATG	1e-64	-1.479e+02	0.0000	1877.0	1.87%	1203.2	1.23%
Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer	ATATGCAAAT	1e-63	-1.465e+02	0.0000	3385.0	3.37%	2435.7	2.50%
Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer	CTGTCTGG	1e-63	-1.461e+02	0.0000	17496.0	17.44%	15093.6	15.48%
Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGMATATDC	1e-62	-1.441e+02	0.0000	9341.0	9.31%	7653.4	7.85%
Elk1(ETS)/Hela-Elk1-ChIP-Seq(GSE31477)/Homer	HACTTCCGGY	1e-61	-1.419e+02	0.0000	6588.0	6.57%	5212.2	5.34%
CTCF-SatelliteElement(Zf?)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	TGCAGTTCCMVNWRTGGCCA	1e-58	-1.337e+02	0.0000	344.0	0.34%	121.9	0.12%
Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATATTC	1e-57	-1.329e+02	0.0000	1155.0	1.15%	673.2	0.69%
Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer	CCTGCTGAGH	1e-57	-1.326e+02	0.0000	10546.0	10.51%	8799.7	9.02%
MafK(bZIP)/C2C12-MafK-ChIP-Seq(GSE36030)/Homer	GCTGASTCAGCA	1e-54	-1.265e+02	0.0000	2853.0	2.84%	2044.5	2.10%
ZNF264(Zf)/HEK293-ZNF264.GFP-ChIP-Seq(GSE58341)/Homer	RGGGCACTAACY	1e-54	-1.252e+02	0.0000	6706.0	6.68%	5386.5	5.52%
GABPA(ETS)/Jurkat-GABPa-ChIP-Seq(GSE17954)/Homer	RACCGGAAGT	1e-53	-1.237e+02	0.0000	9858.0	9.82%	8223.5	8.43%
EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer	ATTTCCTGTN	1e-51	-1.193e+02	0.0000	7450.0	7.42%	6076.4	6.23%
EWS:FLI1-fusion(ETS)/SK_N_MC-EWS:FLI1-ChIP-Seq(SRA014231)/Homer	VACAGGAAAT	1e-48	-1.111e+02	0.0000	6428.0	6.41%	5202.7	5.34%
RBPJ:Ebox(?,bHLH)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	GGGRAARRGRMCAGMTG	1e-48	-1.111e+02	0.0000	4100.0	4.09%	3154.7	3.23%
Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer	VBSYGTCTGG	1e-46	-1.077e+02	0.0000	17615.0	17.55%	15473.9	15.87%
Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer	SCTGTCAVTCAV	1e-46	-1.072e+02	0.0000	2507.0	2.50%	1807.9	1.85%
Pit1+1bp(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGCATAATTCA	1e-44	-1.014e+02	0.0000	3182.0	3.17%	2396.2	2.46%
Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer	TGATTRATGGCY	1e-43	-1.005e+02	0.0000	1851.0	1.84%	1281.2	1.31%
OCT:OCT(POU,Homeobox,IR1)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATWATTCATGA	1e-43	-1.003e+02	0.0000	284.0	0.28%	106.2	0.11%
Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer	CVGTSCTCCC	1e-42	-9.810e+01	0.0000	23346.0	23.27%	20933.8	21.47%
CRE(bZIP)/Promoter/Homer	CSGTGACGTCAC	1e-42	-9.801e+01	0.0000	2343.0	2.33%	1695.5	1.74%
Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer	GGGGGGGG	1e-41	-9.637e+01	0.0000	16515.0	16.46%	14535.7	14.91%
ARE(NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	RGRACASNSTGTYCYB	1e-40	-9.294e+01	0.0000	2557.0	2.55%	1890.0	1.94%
Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer	CYTGTTTACWYW	1e-39	-9.178e+01	0.0000	6564.0	6.54%	5417.6	5.56%
PGR(NR)/EndoStromal-PGR-ChIP-Seq(GSE69539)/Homer	AAGAACATWHTGTTC	1e-38	-8.897e+01	0.0000	2115.0	2.11%	1529.8	1.57%
FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer	NYYTGTTTACHN	1e-36	-8.399e+01	0.0000	3605.0	3.59%	2824.2	2.90%
Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer	SCTGTCAMTCAN	1e-35	-8.234e+01	0.0000	2455.0	2.45%	1836.6	1.88%
Tcfcp2l1(CP2)/mES-Tcfcp2l1-ChIP-Seq(GSE11431)/Homer	NRAACCRGTTYRAACCRGYT	1e-35	-8.198e+01	0.0000	1470.0	1.46%	1013.5	1.04%
GRE(NR),IR3/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer	VAGRACAKWCTGTYC	1e-35	-8.158e+01	0.0000	2231.0	2.22%	1648.9	1.69%
EHF(ETS)/LoVo-EHF-ChIP-Seq(GSE49402)/Homer	AVCAGGAAGT	1e-35	-8.142e+01	0.0000	13215.0	13.17%	11580.6	11.88%
Sp1(Zf)/Promoter/Homer	GGCCCCGCCCCC	1e-34	-7.968e+01	0.0000	4833.0	4.82%	3927.0	4.03%
PU.1-IRF(ETS:IRF)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	MGGAAGTGAAAC	1e-34	-7.961e+01	0.0000	13162.0	13.12%	11545.2	11.84%
HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer	GGCCATAAATCA	1e-33	-7.680e+01	0.0000	5900.0	5.88%	4898.4	5.02%
ELF1(ETS)/Jurkat-ELF1-ChIP-Seq(SRA014231)/Homer	AVCCGGAAGT	1e-33	-7.624e+01	0.0000	5829.0	5.81%	4837.1	4.96%
GFY(?)/Promoter/Homer	ACTACAATTCCC	1e-33	-7.621e+01	0.0000	882.0	0.88%	555.7	0.57%
ZNF189(Zf)/HEK293-ZNF189.GFP-ChIP-Seq(GSE58341)/Homer	TGGAACAGMA	1e-32	-7.372e+01	0.0000	8543.0	8.51%	7321.4	7.51%
Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer	GGCCATAAATCA	1e-31	-7.257e+01	0.0000	4445.0	4.43%	3615.3	3.71%
MITF(bHLH)/MastCells-MITF-ChIP-Seq(GSE48085)/Homer	RTCATGTGAC	1e-31	-7.235e+01	0.0000	9048.0	9.02%	7794.3	7.99%
Egr1(Zf)/K562-Egr1-ChIP-Seq(GSE32465)/Homer	TGCGTGGGYG	1e-31	-7.201e+01	0.0000	8093.0	8.07%	6920.4	7.10%
GRE(NR),IR3/A549-GR-ChIP-Seq(GSE32465)/Homer	NRGVACABNVTGTYCY	1e-30	-6.967e+01	0.0000	1379.0	1.37%	968.7	0.99%
CArG(MADS)/PUER-Srf-ChIP-Seq(Sullivan_et_al.)/Homer	CCATATATGGNM	1e-28	-6.496e+01	0.0000	2622.0	2.61%	2040.9	2.09%
JunD(bZIP)/K562-JunD-ChIP-Seq/Homer	ATGACGTCATCN	1e-27	-6.339e+01	0.0000	858.0	0.86%	560.4	0.57%
E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer	GGCGGGAARN	1e-25	-5.898e+01	0.0000	6714.0	6.69%	5744.0	5.89%
NRF1(NRF)/MCF7-NRF1-ChIP-Seq(Unpublished)/Homer	CTGCGCATGCGC	1e-25	-5.887e+01	0.0000	2034.0	2.03%	1553.7	1.59%
RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer	AAACCACARM	1e-25	-5.768e+01	0.0000	9536.0	9.50%	8354.4	8.57%
STAT1(Stat)/HelaS3-STAT1-ChIP-Seq(GSE12782)/Homer	NATTTCCNGGAAAT	1e-24	-5.689e+01	0.0000	2468.0	2.46%	1937.6	1.99%
Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	MACAGGAAGT	1e-23	-5.298e+01	0.0000	2897.0	2.89%	2331.9	2.39%
ETS:E-box(ETS,bHLH)/HPC7-Scl-ChIP-Seq(GSE22178)/Homer	AGGAARCAGCTG	1e-22	-5.230e+01	0.0000	1115.0	1.11%	794.9	0.82%
PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer	GSCTGTCACTCA	1e-22	-5.197e+01	0.0000	900.0	0.90%	618.4	0.63%
STAT5(Stat)/mCD4+-Stat5-ChIP-Seq(GSE12346)/Homer	RTTTCTNAGAAA	1e-21	-5.005e+01	0.0000	2919.0	2.91%	2364.9	2.43%
Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer	NNTGTGGATTSS	1e-21	-4.965e+01	0.0000	5398.0	5.38%	4603.9	4.72%
CLOCK(bHLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer	GHCACGTG	1e-21	-4.928e+01	0.0000	5288.0	5.27%	4505.5	4.62%
Brachyury(T-box)/Mesoendoderm-Brachyury-ChIP-exo(GSE54963)/Homer	ANTTMRCASBNNNGTGYKAAN	1e-21	-4.876e+01	0.0000	2542.0	2.53%	2036.1	2.09%
IRF2(IRF)/Erythroblas-IRF2-ChIP-Seq(GSE36985)/Homer	GAAASYGAAASY	1e-21	-4.876e+01	0.0000	931.0	0.93%	651.4	0.67%
TATA-Box(TBP)/Promoter/Homer	CCTTTTAWAGSC	1e-20	-4.766e+01	0.0000	10698.0	10.66%	9523.5	9.77%
STAT6(Stat)/Macrophage-Stat6-ChIP-Seq(GSE38377)/Homer	TTCCKNAGAA	1e-20	-4.694e+01	0.0000	4759.0	4.74%	4038.2	4.14%
EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer	GTCCCCWGGGGA	1e-20	-4.676e+01	0.0000	12187.0	12.15%	10926.4	11.20%
E2F4(E2F)/K562-E2F4-ChIP-Seq(GSE31477)/Homer	GGCGGGAAAH	1e-19	-4.470e+01	0.0000	5439.0	5.42%	4674.6	4.79%
GFY-Staf(?,Zf)/Promoter/Homer	RACTACAATTCCCAGAAKGC	1e-19	-4.444e+01	0.0000	699.0	0.70%	472.8	0.48%
GATA:SCL(Zf,bHLH)/Ter119-SCL-ChIP-Seq(GSE18720)/Homer	CRGCTGBNGNSNNSAGATAA	1e-19	-4.388e+01	0.0000	1181.0	1.18%	873.6	0.90%
CHR(?)/Hela-CellCycle-Expression/Homer	SRGTTTCAAA	1e-18	-4.275e+01	0.0000	5184.0	5.17%	4454.0	4.57%
E-box(bHLH)/Promoter/Homer	SSGGTCACGTGA	1e-18	-4.230e+01	0.0000	835.0	0.83%	588.2	0.60%
Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer	SSCMATWAAA	1e-18	-4.224e+01	0.0000	5481.0	5.46%	4730.8	4.85%
ETS(ETS)/Promoter/Homer	AACCGGAAGT	1e-18	-4.216e+01	0.0000	3493.0	3.48%	2919.9	2.99%
PU.1:IRF8(ETS:IRF)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	GGAAGTGAAAST	1e-17	-4.116e+01	0.0000	1760.0	1.75%	1381.5	1.42%
ELF5(ETS)/T47D-ELF5-ChIP-Seq(GSE30407)/Homer	ACVAGGAAGT	1e-17	-4.020e+01	0.0000	7008.0	6.98%	6155.3	6.31%
USF1(bHLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer	SGTCACGTGR	1e-17	-3.972e+01	0.0000	4605.0	4.59%	3945.9	4.05%
EBF(EBF)/proBcell-EBF-ChIP-Seq(GSE21978)/Homer	DGTCCCYRGGGA	1e-17	-3.952e+01	0.0000	2326.0	2.32%	1888.0	1.94%
OCT:OCT(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	ATGAATATTCATGAG	1e-17	-3.929e+01	0.0000	148.0	0.15%	65.1	0.07%
ZNF467(Zf)/HEK293-ZNF467.GFP-ChIP-Seq(GSE58341)/Homer	TGGGGAAGGGCM	1e-16	-3.873e+01	0.0000	9481.0	9.45%	8472.2	8.69%
CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	DRTGTTGCAA	1e-16	-3.797e+01	0.0000	7024.0	7.00%	6189.5	6.35%
Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer	ASWTCAAAGG	1e-15	-3.545e+01	0.0000	1937.0	1.93%	1561.7	1.60%
ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer	AGGCCTRG	1e-15	-3.541e+01	0.0000	15604.0	15.55%	14281.3	14.64%
IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer	ACTGAAACCA	1e-15	-3.529e+01	0.0000	3843.0	3.83%	3279.4	3.36%
c-Myc(bHLH)/LNCAP-cMyc-ChIP-Seq(Unpublished)/Homer	VCCACGTG	1e-15	-3.476e+01	0.0000	4695.0	4.68%	4063.8	4.17%
PAX3:FKHR-fusion(Paired,Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer	ACCRTGACTAATTNN	1e-14	-3.347e+01	0.0000	1704.0	1.70%	1364.2	1.40%
n-Myc(bHLH)/mES-nMyc-ChIP-Seq(GSE11431)/Homer	VRCCACGTGG	1e-14	-3.330e+01	0.0000	7012.0	6.99%	6220.6	6.38%
Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer	MTGATGCAAT	1e-13	-3.072e+01	0.0000	2777.0	2.77%	2339.2	2.40%
Max(bHLH)/K562-Max-ChIP-Seq(GSE31477)/Homer	RCCACGTGGYYN	1e-13	-3.019e+01	0.0000	6479.0	6.46%	5753.5	5.90%
IRF1(IRF)/PBMC-IRF1-ChIP-Seq(GSE43036)/Homer	GAAAGTGAAAGT	1e-12	-2.985e+01	0.0000	1178.0	1.17%	918.4	0.94%
STAT6(Stat)/CD4-Stat6-ChIP-Seq(GSE22104)/Homer	ABTTCYYRRGAA	1e-12	-2.983e+01	0.0000	4518.0	4.50%	3939.0	4.04%
Egr2(Zf)/Thymocytes-Egr2-ChIP-Seq(GSE34254)/Homer	NGCGTGGGCGGR	1e-12	-2.963e+01	0.0000	2187.0	2.18%	1813.9	1.86%
Tcf4(HMG)/Hct116-Tcf4-ChIP-Seq(SRA012054)/Homer	ASATCAAAGGVA	1e-12	-2.830e+01	0.0000	3533.0	3.52%	3044.9	3.12%
HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer	TTTTATKRGG	1e-12	-2.814e+01	0.0000	8662.0	8.63%	7817.1	8.02%
E2F(E2F)/Hela-CellCycle-Expression/Homer	TTSGCGCGAAAA	1e-11	-2.761e+01	0.0000	555.0	0.55%	394.3	0.40%
IRF:BATF(IRF:bZIP)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	CTTTCANTATGACTV	1e-11	-2.685e+01	0.0000	939.0	0.94%	722.6	0.74%
Phox2a(Homeobox)/Neuron-Phox2a-ChIP-Seq(GSE31456)/Homer	YTAATYNRATTA	1e-11	-2.682e+01	0.0000	3056.0	3.05%	2618.7	2.69%
PU.1(ETS)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	AGAGGAAGTG	1e-11	-2.582e+01	0.0000	4415.0	4.40%	3877.0	3.98%
NRF(NRF)/Promoter/Homer	STGCGCATGCGC	1e-10	-2.363e+01	0.0000	2132.0	2.12%	1798.4	1.84%
RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer	SAAACCACAG	1e-10	-2.311e+01	0.0000	6218.0	6.20%	5581.4	5.72%
YY1(Zf)/Promoter/Homer	CAAGATGGCGGC	1e-9	-2.253e+01	0.0000	826.0	0.82%	640.6	0.66%
BMAL1(bHLH)/Liver-Bmal1-ChIP-Seq(GSE39860)/Homer	GNCACGTG	1e-9	-2.236e+01	0.0000	17681.0	17.62%	16457.4	16.88%
RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	GCTGTGGTTW	1e-9	-2.217e+01	0.0000	6526.0	6.50%	5880.6	6.03%
NF1:FOXA1(CTF,Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WNTGTTTRYTTTGGCA	1e-9	-2.208e+01	0.0000	488.0	0.49%	353.2	0.36%
NFAT:AP1(RHD,bZIP)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	SARTGGAAAAWRTGAGTCAB	1e-9	-2.110e+01	0.0000	1476.0	1.47%	1221.4	1.25%
Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer	GKVTCADRTTWC	1e-8	-1.967e+01	0.0000	2025.0	2.02%	1726.4	1.77%
FoxL2(Forkhead)/Ovary-FoxL2-ChIP-Seq(GSE60858)/Homer	WWTRTAAACAVG	1e-7	-1.729e+01	0.0000	6688.0	6.67%	6092.9	6.25%
MafF(bZIP)/HepG2-MafF-ChIP-Seq(GSE31477)/Homer	HWWGTCAGCAWWTTT	1e-7	-1.718e+01	0.0000	2870.0	2.86%	2521.4	2.59%
ISRE(IRF)/ThioMac-LPS-Expression(GSE23622)/Homer	AGTTTCASTTTC	1e-7	-1.702e+01	0.0000	531.0	0.53%	405.1	0.42%
SpiB(ETS)/OCILY3-SPIB-ChIP-Seq(GSE56857)/Homer	AAAGRGGAAGTG	1e-6	-1.467e+01	0.0000	2088.0	2.08%	1820.0	1.87%
RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer	NWAACCACADNN	1e-6	-1.443e+01	0.0000	7110.0	7.09%	6531.2	6.70%
ZNF317(Zf)/HEK293-ZNF317.GFP-ChIP-Seq(GSE58341)/Homer	GTCWGCTGTYYCTCT	1e-6	-1.400e+01	0.0000	839.0	0.84%	688.3	0.71%
ZNF675(Zf)/HEK293-ZNF675.GFP-ChIP-Seq(GSE58341)/Homer	ARGAGGMCAAAATGW	1e-5	-1.375e+01	0.0000	1236.0	1.23%	1047.1	1.07%
Sox9(HMG)/Limb-SOX9-ChIP-Seq(GSE73225)/Homer	AGGVNCCTTTGT	1e-5	-1.360e+01	0.0000	7066.0	7.04%	6502.6	6.67%
FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WAAGTAAACA	1e-5	-1.321e+01	0.0000	9742.0	9.71%	9051.5	9.28%
GATA(Zf),IR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NAGATWNBNATCTNN	1e-5	-1.251e+01	0.0000	624.0	0.62%	504.0	0.52%
HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer	GYCATCMATCAT	1e-4	-1.041e+01	0.0001	815.0	0.81%	686.7	0.70%
Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer	ATTAACACCT	1e-4	-1.040e+01	0.0001	19963.0	19.89%	18911.4	19.39%
bZIP:IRF(bZIP,IRF)/Th17-BatF-ChIP-Seq(GSE39756)/Homer	NAGTTTCABTHTGACTNW	1e-4	-1.006e+01	0.0001	3584.0	3.57%	3263.9	3.35%
E2F7(E2F)/Hela-E2F7-ChIP-Seq(GSE32673)/Homer	VDTTTCCCGCCA	1e-4	-9.624e+00	0.0001	1346.0	1.34%	1177.6	1.21%
TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer	CCWGGAATGY	1e-4	-9.590e+00	0.0001	8442.0	8.41%	7882.6	8.08%
Klf9(Zf)/GBM-Klf9-ChIP-Seq(GSE62211)/Homer	GCCACRCCCACY	1e-3	-9.010e+00	0.0002	4580.0	4.56%	4219.3	4.33%
ZNF322(Zf)/HEK293-ZNF322.GFP-ChIP-Seq(GSE58341)/Homer	GAGCCTGGTACTGWGCCTGR	1e-3	-8.961e+00	0.0002	3565.0	3.55%	3260.9	3.34%
ZBTB33(Zf)/GM12878-ZBTB33-ChIP-Seq(GSE32465)/Homer	GGVTCTCGCGAGAAC	1e-3	-8.307e+00	0.0004	452.0	0.45%	371.9	0.38%
EBNA1(EBV-virus)/Raji-EBNA1-ChIP-Seq(GSE30709)/Homer	GGYAGCAYDTGCTDCCCNNN	1e-3	-8.271e+00	0.0004	156.0	0.16%	113.2	0.12%
FOXM1(Forkhead)/MCF7-FOXM1-ChIP-Seq(GSE72977)/Homer	TRTTTACTTW	1e-3	-7.579e+00	0.0008	8263.0	8.23%	7755.0	7.95%
Usf2(bHLH)/C2C12-Usf2-ChIP-Seq(GSE36030)/Homer	GTCACGTGGT	1e-3	-7.578e+00	0.0008	3295.0	3.28%	3025.5	3.10%
Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer	AGGTGHCAGACA	1e-3	-7.343e+00	0.0011	1859.0	1.85%	1676.6	1.72%
ZNF415(Zf)/HEK293-ZNF415.GFP-ChIP-Seq(GSE58341)/Homer	GRTGMTRGAGCC	1e-3	-7.050e+00	0.0014	6436.0	6.41%	6021.2	6.17%
GRHL2(CP2)/HBE-GRHL2-ChIP-Seq(GSE46194)/Homer	AAACYKGTTWDACMRGTTTB	1e-2	-6.614e+00	0.0022	2992.0	2.98%	2753.4	2.82%
PAX6(Paired,Homeobox)/Forebrain-Pax6-ChIP-Seq(GSE66961)/Homer	NGTGTTCAVTSAAGCGKAAA	1e-2	-6.518e+00	0.0024	782.0	0.78%	682.2	0.70%
GATA3(Zf),DR8/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATSTNDNNDSAGATAASN	1e-2	-6.343e+00	0.0028	568.0	0.57%	487.7	0.50%
HRE(HSF)/HepG2-HSF1-ChIP-Seq(GSE31477)/Homer	BSTTCTRGAABVTTCYAGAA	1e-2	-5.793e+00	0.0049	1238.0	1.23%	1112.9	1.14%
Chop(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	ATTGCATCAT	1e-2	-5.065e+00	0.0101	2055.0	2.05%	1890.1	1.94%
T1ISRE(IRF)/ThioMac-Ifnb-Expression/Homer	ACTTTCGTTTCT	1e-2	-4.855e+00	0.0124	95.0	0.09%	71.6	0.07%
c-Myc(bHLH)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	VVCCACGTGG	1e-2	-4.794e+00	0.0131	4978.0	4.96%	4679.2	4.80%
HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer	RTACGTGC	1e-1	-4.509e+00	0.0173	10516.0	10.48%	10005.9	10.26%
HIF2a(bHLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer	GCACGTACCC	1e-1	-4.433e+00	0.0186	3132.0	3.12%	2924.7	3.00%
NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer	GGAAATTCCC	1e-1	-4.314e+00	0.0208	489.0	0.49%	429.1	0.44%
Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer	TBGCACGCAA	1e-1	-4.126e+00	0.0250	6544.0	6.52%	6198.8	6.36%
ZNF382(Zf)/HEK293-ZNF382.GFP-ChIP-Seq(GSE58341)/Homer	GNCTGTASTRNTGBCTCHTT	1e-1	-3.651e+00	0.0400	217.0	0.22%	184.9	0.19%
Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer	BTCAAGGTCA	1e-1	-3.626e+00	0.0408	4401.0	4.39%	4156.3	4.26%
Zfp809(Zf)/ES-Zfp809-ChIP-Seq(GSE70799)/Homer	GGGGCTYGKCTGGGA	1e-1	-3.477e+00	0.0471	2872.0	2.86%	2696.8	2.77%
bHLHE40(bHLH)/HepG2-BHLHE40-ChIP-Seq(GSE31477)/Homer	KCACGTGMCN	1e-1	-3.453e+00	0.0481	2952.0	2.94%	2773.7	2.84%
PRDM14(Zf)/H1-PRDM14-ChIP-Seq(GSE22767)/Homer	RGGTCTCTAACY	1e-1	-3.197e+00	0.0618	2161.0	2.15%	2023.1	2.07%
Gata4(Zf)/Heart-Gata4-ChIP-Seq(GSE35151)/Homer	NBWGATAAGR	1e-1	-2.962e+00	0.0778	7732.0	7.71%	7381.4	7.57%
GFX(?)/Promoter/Homer	ATTCTCGCGAGA	1e-1	-2.941e+00	0.0791	140.0	0.14%	118.9	0.12%
E2F1(E2F)/Hela-E2F1-ChIP-Seq(GSE22478)/Homer	CWGGCGGGAA	1e-1	-2.818e+00	0.0890	2935.0	2.92%	2772.5	2.84%
REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer	GGMGCTGTCCATGGTGCTGA	1e-1	-2.757e+00	0.0942	108.0	0.11%	90.4	0.09%
FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer	WAAGTAAACA	1e-1	-2.691e+00	0.1001	7790.0	7.76%	7448.3	7.64%
TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer	ACWTCAAAGG	1e-1	-2.601e+00	0.1090	516.0	0.51%	471.0	0.48%
Mef2b(MADS)/HEK293-Mef2b.V5-ChIP-Seq(GSE67450)/Homer	GCTATTTTTGGM	1e-1	-2.406e+00	0.1320	9883.0	9.85%	9482.4	9.72%
PRDM1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer	ACTTTCACTTTC	1e-1	-2.359e+00	0.1377	4522.0	4.51%	4311.6	4.42%
Pax7(Paired,Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCAATTA	1e0	-1.867e+00	0.2242	684.0	0.68%	639.5	0.66%
KLF10(Zf)/HEK293-KLF10.GFP-ChIP-Seq(GSE58341)/Homer	GGGGGTGTGTCC	1e0	-1.665e+00	0.2730	5809.0	5.79%	5582.7	5.72%
Pax7(Paired,Homeobox),long/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCHGATTAC	1e0	-1.365e+00	0.3671	146.0	0.15%	134.3	0.14%
TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer	YCWGGAATGY	1e0	-1.282e+00	0.3971	6215.0	6.19%	5996.3	6.15%
CEBP:CEBP(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	NTNATGCAAYMNNHTGMAAY	1e0	-1.205e+00	0.4268	1325.0	1.32%	1269.1	1.30%
HIF-1a(bHLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer	TACGTGCV	1e0	-9.274e-01	0.5608	2324.0	2.32%	2246.2	2.30%
HRE(HSF)/Striatum-HSF1-ChIP-Seq(GSE38000)/Homer	TTCTAGAABNTTCTA	1e0	-7.884e-01	0.6416	1540.0	1.53%	1492.7	1.53%
PAX5(Paired,Homeobox),condensed/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GTCACGCTCSCTGM	1e0	-7.252e-01	0.6805	976.0	0.97%	947.8	0.97%
ETS:RUNX(ETS,Runt)/Jurkat-RUNX1-ChIP-Seq(GSE17954)/Homer	RCAGGATGTGGT	1e0	-5.693e-01	0.7918	867.0	0.86%	847.7	0.87%
HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer	NCYAATAAAA	1e0	-3.781e-01	0.9545	8336.0	8.31%	8143.0	8.35%
ERE(NR),IR3/MCF7-ERa-ChIP-Seq(Unpublished)/Homer	VAGGTCACNSTGACC	1e0	-3.581e-01	0.9695	2127.0	2.12%	2090.1	2.14%
ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer	AGGCCTAG	1e0	-3.130e-01	1.0000	22477.0	22.40%	21923.6	22.48%
ZNF528(Zf)/HEK293-ZNF528.GFP-ChIP-Seq(GSE58341)/Homer	AGAAATGACTTCCCT	1e0	-1.872e-01	1.0000	48.0	0.05%	53.7	0.06%
ZBTB12(Zf)/HEK293-ZBTB12.GFP-ChIP-Seq(GSE58341)/Homer	NGNTCTAGAACCNGV	1e0	-1.255e-01	1.0000	3421.0	3.41%	3391.7	3.48%
ZNF16(Zf)/HEK293-ZNF16.GFP-ChIP-Seq(GSE58341)/Homer	MACCTTCYATGGCTCCCTAKTGCCY	1e0	-1.161e-01	1.0000	92.0	0.09%	101.5	0.10%
ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer	ATTTCCCAGVAKSCY	1e0	-1.075e-01	1.0000	3412.0	3.40%	3387.4	3.47%
ZNF669(Zf)/HEK293-ZNF669.GFP-ChIP-Seq(GSE58341)/Homer	GARTGGTCATCGCCC	1e0	-1.030e-01	1.0000	608.0	0.61%	622.6	0.64%
NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer	WGGGGATTTCCC	1e0	-8.891e-02	1.0000	4283.0	4.27%	4248.6	4.36%
ZNF165(Zf)/WHIM12-ZNF165-ChIP-Seq(GSE65937)/Homer	AAGGKGRCGCAGGCA	1e0	-8.779e-02	1.0000	1631.0	1.63%	1639.6	1.68%
AP-2gamma(AP2)/MCF7-TFAP2C-ChIP-Seq(GSE21234)/Homer	SCCTSAGGSCAW	1e0	-6.474e-02	1.0000	12723.0	12.68%	12522.3	12.84%
ZSCAN22(Zf)/HEK293-ZSCAN22.GFP-ChIP-Seq(GSE58341)/Homer	SMCAGTCWGAKGGAGGAGGC	1e0	-5.543e-02	1.0000	787.0	0.78%	810.0	0.83%
Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer	CCATTGTATGCAAAT	1e0	-4.428e-02	1.0000	895.0	0.89%	920.4	0.94%
GATA(Zf),IR3/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NNNNNBAGATAWYATCTVHN	1e0	-4.296e-02	1.0000	1326.0	1.32%	1350.9	1.39%
Pax7(Paired,Homeobox),longest/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	NTAATTDGCYAATTANNWWD	1e0	-3.959e-02	1.0000	192.0	0.19%	211.1	0.22%
Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer	GTCATGCHTGRCTGS	1e0	-3.785e-02	1.0000	4097.0	4.08%	4091.7	4.20%
Hnf1(Homeobox)/Liver-Foxa2-Chip-Seq(GSE25694)/Homer	GGTTAAWCATTAA	1e0	-3.121e-02	1.0000	701.0	0.70%	730.2	0.75%
Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer	BTCAAGGTCA	1e0	-1.500e-02	1.0000	5789.0	5.77%	5783.8	5.93%
ZNF519(Zf)/HEK293-ZNF519.GFP-ChIP-Seq(GSE58341)/Homer	GAGSCCGAGC	1e0	-1.302e-02	1.0000	3057.0	3.05%	3090.7	3.17%
Atf2(bZIP)/3T3L1-Atf2-ChIP-Seq(GSE56872)/Homer	NRRTGACGTCAT	1e0	-1.210e-02	1.0000	3004.0	2.99%	3039.3	3.12%
Gata2(Zf)/K562-GATA2-ChIP-Seq(GSE18829)/Homer	BBCTTATCTS	1e0	-1.210e-02	1.0000	4670.0	4.65%	4686.4	4.81%
Gata1(Zf)/K562-GATA1-ChIP-Seq(GSE18829)/Homer	SAGATAAGRV	1e0	-1.044e-02	1.0000	4161.0	4.15%	4187.2	4.29%
p53(p53)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	ACATGCCCGGGCAT	1e0	-5.252e-03	1.0000	195.0	0.19%	226.9	0.23%
p53(p53)/Saos-p53-ChIP-Seq(GSE15780)/Homer	RRCATGYCYRGRCATGYYYN	1e0	-5.007e-03	1.0000	695.0	0.69%	743.5	0.76%
p53(p53)/Saos-p53-ChIP-Seq/Homer	RRCATGYCYRGRCATGYYYN	1e0	-5.007e-03	1.0000	695.0	0.69%	743.5	0.76%
p63(p53)/Keratinocyte-p63-ChIP-Seq(GSE17611)/Homer	NNDRCATGYCYNRRCATGYH	1e0	-4.784e-03	1.0000	3173.0	3.16%	3225.7	3.31%
Mouse_Recombination_Hotspot(Zf)/Testis-DMC1-ChIP-Seq(GSE24438)/Homer	ACTYKNATTCGTGNTACTTC	1e0	-2.360e-03	1.0000	431.0	0.43%	478.3	0.49%
NFkB-p50,p52(RHD)/Monocyte-p50-ChIP-Chip(Schreiber_et_al.)/Homer	GGGGGAATCCCC	1e0	-1.324e-03	1.0000	982.0	0.98%	1048.1	1.07%
Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer	RRSCACTYAA	1e0	-8.700e-04	1.0000	24705.0	24.62%	24426.6	25.05%
NPAS2(bHLH)/Liver-NPAS2-ChIP-Seq(GSE39860)/Homer	KCCACGTGAC	1e0	-1.230e-04	1.0000	10923.0	10.89%	10970.5	11.25%
GATA3(Zf),DR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATGKDGAGATAAG	1e0	-1.160e-04	1.0000	525.0	0.52%	596.3	0.61%
RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer	RGGTCADNNAGAGGTCAV	1e0	-3.100e-05	1.0000	163.0	0.16%	213.7	0.22%
Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer	TGACCTTTNCNT	1e0	-7.000e-06	1.0000	952.0	0.95%	1061.7	1.09%
ZNF41(Zf)/HEK293-ZNF41.GFP-ChIP-Seq(GSE58341)/Homer	CCTCATGGTGYCYTWYTCCCTTGTG	1e0	-3.000e-06	1.0000	149.0	0.15%	205.4	0.21%
TEAD2(TEA)/Py2T-Tead2-ChIP-Seq(GSE55709)/Homer	CCWGGAATGY	1e0	-3.000e-06	1.0000	4819.0	4.80%	4988.1	5.12%
ZNF692(Zf)/HEK293-ZNF692.GFP-ChIP-Seq(GSE58341)/Homer	GTGGGCCCCA	1e0	-0.000e+00	1.0000	1507.0	1.50%	1655.8	1.70%
PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GCAGCCAAGCRTGACH	1e0	-0.000e+00	1.0000	4050.0	4.04%	4243.1	4.35%
AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer	ATGCCCTGAGGC	1e0	-0.000e+00	1.0000	9547.0	9.51%	9739.5	9.99%
GLI3(Zf)/Limb-GLI3-ChIP-Chip(GSE11077)/Homer	CGTGGGTGGTCC	1e0	-0.000e+00	1.0000	900.0	0.90%	1032.2	1.06%
c-Jun-CRE(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	ATGACGTCATCY	1e0	-0.000e+00	1.0000	2839.0	2.83%	3031.6	3.11%
RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer	AGGTCAAGGTCA	1e0	-0.000e+00	1.0000	179.0	0.18%	251.6	0.26%
Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer	RSCACTYRAG	1e0	-0.000e+00	1.0000	31293.0	31.19%	31192.2	31.99%
VDR(NR),DR3/GM10855-VDR+vitD-ChIP-Seq(GSE22484)/Homer	ARAGGTCANWGAGTTCANNN	1e0	-0.000e+00	1.0000	1361.0	1.36%	1534.1	1.57%
HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer	NTATYGATCH	1e0	-0.000e+00	1.0000	3619.0	3.61%	3861.8	3.96%
KLF14(Zf)/HEK293-KLF14.GFP-ChIP-Seq(GSE58341)/Homer	RGKGGGCGKGGC	1e0	-0.000e+00	1.0000	20966.0	20.89%	21112.8	21.65%
Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer	GYMATAAAAH	1e0	-0.000e+00	1.0000	4770.0	4.75%	5065.7	5.19%
Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer	KTGACCTTGA	1e0	-0.000e+00	1.0000	4711.0	4.69%	5021.8	5.15%
ZFP3(Zf)/HEK293-ZFP3.GFP-ChIP-Seq(GSE58341)/Homer	GGGTTTTGAAGGATGARTAGGAGTT	1e0	-0.000e+00	1.0000	13.0	0.01%	51.7	0.05%
GATA3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATAASR	1e0	-0.000e+00	1.0000	11536.0	11.50%	11882.8	12.19%
RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer	TAGGGCAAAGGTCA	1e0	-0.000e+00	1.0000	9852.0	9.82%	10242.8	10.50%
DMRT6(DM)/Testis-DMRT6-ChIP-Seq(GSE60440)/Homer	YDGHTACAWTGTADC	1e0	-0.000e+00	1.0000	1071.0	1.07%	1287.5	1.32%
FXR(NR),IR1/Liver-FXR-ChIP-Seq(Chong_et_al.)/Homer	AGGTCANTGACCTB	1e0	-0.000e+00	1.0000	3161.0	3.15%	3492.1	3.58%
DMRT1(DM)/Testis-DMRT1-ChIP-Seq(GSE64892)/Homer	TWGHWACAWTGTWDC	1e0	-0.000e+00	1.0000	1390.0	1.39%	1657.0	1.70%
HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer	CARRGKBCAAAGTYCA	1e0	-0.000e+00	1.0000	3188.0	3.18%	3558.2	3.65%
FOXA1:AR(Forkhead,NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	AGTAAACAAAAAAGAACAND	1e0	0.000e+00	1.0000	374.0	0.37%	554.1	0.57%
Atf1(bZIP)/K562-ATF1-ChIP-Seq(GSE31477)/Homer	GATGACGTCA	1e0	0.000e+00	1.0000	6222.0	6.20%	6866.3	7.04%
Atf7(bZIP)/3T3L1-Atf7-ChIP-Seq(GSE56872)/Homer	NGRTGACGTCAY	1e0	0.000e+00	1.0000	4421.0	4.41%	5129.2	5.26%
Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer	TTRAGTGSYK	1e0	0.000e+00	1.0000	23813.0	23.73%	27503.5	28.20%
CEBP(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	ATTGCGCAAC	1e0	0.000e+00	1.0000	5652.0	5.63%	6572.3	6.74%
CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer	GCTAATCC	1e0	0.000e+00	1.0000	21495.0	21.42%	25972.8	26.63%
RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer	AGGTCAAGGTCA	1e0	0.000e+00	1.0000	739.0	0.74%	1068.1	1.10%
E2A(bHLH),near_PU.1/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	NVCACCTGBN	1e0	0.000e+00	1.0000	15851.0	15.80%	18804.4	19.28%
EKLF(Zf)/Erythrocyte-Klf1-ChIP-Seq(GSE20478)/Homer	NWGGGTGTGGCY	1e0	0.000e+00	1.0000	1371.0	1.37%	2183.7	2.24%
Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer	CAAAGGTCAG	1e0	0.000e+00	1.0000	20987.0	20.92%	22906.8	23.49%
Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer	MAATCACTGC	1e0	0.000e+00	1.0000	7844.0	7.82%	8616.5	8.84%
GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer	RGGATTAR	1e0	0.000e+00	1.0000	10221.0	10.19%	16687.8	17.11%
Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer	GCCACACCCA	1e0	0.000e+00	1.0000	3494.0	3.48%	4638.9	4.76%
KLF5(Zf)/LoVo-KLF5-ChIP-Seq(GSE49402)/Homer	DGGGYGKGGC	1e0	0.000e+00	1.0000	14783.0	14.73%	15875.2	16.28%
LXRE(NR),DR4/RAW-LXRb.biotin-ChIP-Seq(GSE21512)/Homer	RGGTTACTANAGGTCA	1e0	0.000e+00	1.0000	523.0	0.52%	1805.8	1.85%
Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529)/Homer	CYAAAAATAG	1e0	0.000e+00	1.0000	5178.0	5.16%	6263.1	6.42%
Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer	DCYAAAAATAGM	1e0	0.000e+00	1.0000	5697.0	5.68%	6699.2	6.87%
Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer	BTBRAGTGSN	1e0	0.000e+00	1.0000	22754.0	22.68%	23558.5	24.16%
Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer	AAGCACTTAA	1e0	0.000e+00	1.0000	23709.0	23.63%	24451.4	25.07%
Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer	NYTAATCCYB	1e0	0.000e+00	1.0000	6250.0	6.23%	7026.6	7.21%
Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer	TAATCCCN	1e0	0.000e+00	1.0000	40620.0	40.48%	42260.1	43.34%
PPARE(NR),DR1/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer	TGACCTTTGCCCCA	1e0	0.000e+00	1.0000	7717.0	7.69%	8449.9	8.66%
Reverb(NR),DR2/RAW-Reverba.biotin-ChIP-Seq(GSE45914)/Homer	GTRGGTCASTGGGTCA	1e0	0.000e+00	1.0000	1108.0	1.10%	1484.4	1.52%
Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer	CCWTTGTYYB	1e0	0.000e+00	1.0000	12589.0	12.55%	13260.6	13.60%
Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer	RAACAATGGN	1e0	0.000e+00	1.0000	7354.0	7.33%	9181.9	9.42%
Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer	BCCATTGTTC	1e0	0.000e+00	1.0000	5953.0	5.93%	6687.5	6.86%
Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer	CCWTTGTY	1e0	0.000e+00	1.0000	12965.0	12.92%	13940.9	14.30%
Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer	YCTTTGTTCC	1e0	0.000e+00	1.0000	6182.0	6.16%	6644.9	6.81%
Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer	CCATTGTTNY	1e0	0.000e+00	1.0000	11785.0	11.74%	12653.8	12.98%
Srebp1a(bHLH)/HepG2-Srebp1a-ChIP-Seq(GSE31477)/Homer	RTCACSCCAY	1e0	0.000e+00	1.0000	1983.0	1.98%	2762.6	2.83%
Srebp2(bHLH)/HepG2-Srebp2-ChIP-Seq(GSE31477)/Homer	CGGTCACSCCAC	1e0	0.000e+00	1.0000	1313.0	1.31%	2117.7	2.17%
Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer	AGGTGTGAAM	1e0	0.000e+00	1.0000	8541.0	8.51%	9380.1	9.62%
Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer	AGGTGTCA	1e0	0.000e+00	1.0000	34950.0	34.83%	35823.2	36.73%
TR4(NR),DR1/Hela-TR4-ChIP-Seq(GSE24685)/Homer	GAGGTCAAAGGTCA	1e0	0.000e+00	1.0000	500.0	0.50%	752.2	0.77%
THRa(NR)/C17.2-THRa-ChIP-Seq(GSE38347)/Homer	GGTCANYTGAGGWCA	1e0	0.000e+00	1.0000	4089.0	4.07%	5792.0	5.94%
ZNF136(Zf)/HEK293-ZNF136.GFP-ChIP-Seq(GSE58341)/Homer	YTKGATAHAGTATTCTWGGTNGGCA	1e0	0.000e+00	1.0000	672.0	0.67%	1016.6	1.04%
ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer	WDNCTGGGCA	1e0	0.000e+00	1.0000	17007.0	16.95%	18512.9	18.98%