Information for 1-GVCAGCTG (Motif 2)


Reverse Opposite:

p-value:1e-1449
log p-value:-3.338e+03
Information Content per bp:1.657
Number of Target Sequences with motif45988.0
Percentage of Target Sequences with motif45.83%
Number of Background Sequences with motif32551.9
Percentage of Background Sequences with motif33.38%
Average Position of motif in Targets100.2 +/- 54.2bp
Average Position of motif in Background100.2 +/- 68.2bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.41
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Ap4(bHLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer

Match Rank:1
Score:0.97
Offset:1
Orientation:reverse strand
Alignment:GVCAGCTG---
-HCAGCTGDTN

Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer

Match Rank:2
Score:0.95
Offset:1
Orientation:forward strand
Alignment:GVCAGCTG---
-NCAGCTGCTG

E2A(bHLH)/proBcell-E2A-ChIP-Seq(GSE21978)/Homer

Match Rank:3
Score:0.95
Offset:-1
Orientation:forward strand
Alignment:-GVCAGCTG-
NNACAGCTGC

Myog/MA0500.1/Jaspar

Match Rank:4
Score:0.95
Offset:0
Orientation:forward strand
Alignment:GVCAGCTG---
GACAGCTGCAG

MyoG(bHLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer

Match Rank:5
Score:0.94
Offset:0
Orientation:forward strand
Alignment:GVCAGCTG
AACAGCTG

Ptf1a(bHLH)/Panc1-Ptf1a-ChIP-Seq(GSE47459)/Homer

Match Rank:6
Score:0.94
Offset:1
Orientation:forward strand
Alignment:GVCAGCTG---
-ACAGCTGTTN

Tcf12/MA0521.1/Jaspar

Match Rank:7
Score:0.94
Offset:0
Orientation:forward strand
Alignment:GVCAGCTG---
AACAGCTGCAG

Ascl1(bHLH)/NeuralTubes-Ascl1-ChIP-Seq(GSE55840)/Homer

Match Rank:8
Score:0.94
Offset:0
Orientation:reverse strand
Alignment:GVCAGCTG----
NVCAGCTGBBNN

MyoD(bHLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer

Match Rank:9
Score:0.94
Offset:0
Orientation:forward strand
Alignment:GVCAGCTG----
AGCAGCTGCTNN

Myf5(bHLH)/GM-Myf5-ChIP-Seq(GSE24852)/Homer

Match Rank:10
Score:0.93
Offset:-1
Orientation:forward strand
Alignment:-GVCAGCTG-
BAACAGCTGT