Information for 22-GAAAGCACTC (Motif 16)


Reverse Opposite:

p-value:1e-243
log p-value:-5.604e+02
Information Content per bp:1.536
Number of Target Sequences with motif15647.0
Percentage of Target Sequences with motif15.59%
Number of Background Sequences with motif11735.0
Percentage of Background Sequences with motif12.03%
Average Position of motif in Targets100.6 +/- 56.8bp
Average Position of motif in Background101.4 +/- 64.5bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.03
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer

Match Rank:1
Score:0.75
Offset:2
Orientation:forward strand
Alignment:GAAAGCACTC--
--AAGCACTTAA

Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer

Match Rank:2
Score:0.72
Offset:2
Orientation:reverse strand
Alignment:GAAAGCACTC--
--MRSCACTYAA

Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:3
Score:0.70
Offset:2
Orientation:forward strand
Alignment:GAAAGCACTC--
--AASCACTCAA

Nkx2-5(var.2)/MA0503.1/Jaspar

Match Rank:4
Score:0.69
Offset:2
Orientation:forward strand
Alignment:GAAAGCACTC---
--AGCCACTCAAG

Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer

Match Rank:5
Score:0.65
Offset:3
Orientation:forward strand
Alignment:GAAAGCACTC---
---RSCACTYRAG

IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer

Match Rank:6
Score:0.65
Offset:-3
Orientation:forward strand
Alignment:---GAAAGCACTC
ACTGAAACCA---

PH0037.1_Hdx/Jaspar

Match Rank:7
Score:0.63
Offset:-5
Orientation:forward strand
Alignment:-----GAAAGCACTC--
AAGGCGAAATCATCGCA

Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer

Match Rank:8
Score:0.63
Offset:3
Orientation:reverse strand
Alignment:GAAAGCACTC---
---NSCACTYVAV

PB0099.1_Zfp691_1/Jaspar

Match Rank:9
Score:0.62
Offset:-3
Orientation:reverse strand
Alignment:---GAAAGCACTC----
NNNNTGAGCACTGTNNG

Gfi1/MA0038.1/Jaspar

Match Rank:10
Score:0.60
Offset:0
Orientation:forward strand
Alignment:GAAAGCACTC
CAAATCACTG