Information for 13-DBCAAVYRNN (Motif 10)


Reverse Opposite:

p-value:1e-511
log p-value:-1.177e+03
Information Content per bp:1.527
Number of Target Sequences with motif25932.0
Percentage of Target Sequences with motif25.84%
Number of Background Sequences with motif19073.0
Percentage of Background Sequences with motif19.56%
Average Position of motif in Targets100.2 +/- 56.1bp
Average Position of motif in Background99.7 +/- 62.9bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.08
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

NFIC/MA0161.1/Jaspar

Match Rank:1
Score:0.67
Offset:-1
Orientation:reverse strand
Alignment:-DBCAAVYRNN
TGCCAA-----

NFIX/MA0671.1/Jaspar

Match Rank:2
Score:0.66
Offset:-3
Orientation:forward strand
Alignment:---DBCAAVYRNN
CGTGCCAAG----

NFIA/MA0670.1/Jaspar

Match Rank:3
Score:0.65
Offset:-3
Orientation:forward strand
Alignment:---DBCAAVYRNN
GGTGCCAAGT---

NFY(CCAAT)/Promoter/Homer

Match Rank:4
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-DBCAAVYRNN
AGCCAATCGG-

Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer

Match Rank:5
Score:0.60
Offset:-2
Orientation:forward strand
Alignment:--DBCAAVYRNN
ACATCAAAGG--

PB0150.1_Mybl1_2/Jaspar

Match Rank:6
Score:0.60
Offset:-2
Orientation:forward strand
Alignment:--DBCAAVYRNN---
CGACCAACTGCCGTG

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:7
Score:0.60
Offset:-2
Orientation:forward strand
Alignment:--DBCAAVYRNN
TTGCCAAG----

SD0002.1_at_AC_acceptor/Jaspar

Match Rank:8
Score:0.60
Offset:-2
Orientation:forward strand
Alignment:--DBCAAVYRNN
AAGGCAAGTGT-

Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer

Match Rank:9
Score:0.59
Offset:-3
Orientation:reverse strand
Alignment:---DBCAAVYRNN
TTATGCAAAT---

Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer

Match Rank:10
Score:0.59
Offset:-3
Orientation:forward strand
Alignment:---DBCAAVYRNN
ATATGCAAAT---