Lmod Warning: ------------------------------------------------------------------------------- The following dependent module(s) are not currently loaded: curl/8.4.0 (required by: htslib/1.16) ------------------------------------------------------------------------------- Lmod Warning: ------------------------------------------------------------------------------- The following dependent module(s) are not currently loaded: curl/8.17.0 (required by: ucsc-utils/v489), openssl/3.0.7 (required by: curl/8.4.0) ------------------------------------------------------------------------------- The following have been reloaded with a version change: 1) curl/8.17.0 => curl/8.4.0 Lmod Warning: ------------------------------------------------------------------------------- The following dependent module(s) are not currently loaded: curl/8.4.0 (required by: htslib/1.16) ------------------------------------------------------------------------------- The following have been reloaded with a version change: 1) curl/8.4.0 => curl/8.17.0 2026-08-06 14:12:59.767887: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcudart.so.11.0 2026-08-06 14:14:19.295059: I tensorflow/compiler/jit/xla_cpu_device.cc:41] Not creating XLA devices, tf_xla_enable_xla_devices not set 2026-08-06 14:14:19.316758: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcuda.so.1 2026-08-06 14:14:19.375205: I tensorflow/core/common_runtime/gpu/gpu_device.cc:1720] Found device 0 with properties: pciBusID: 0000:ca:00.0 name: NVIDIA L40S computeCapability: 8.9 coreClock: 2.52GHz coreCount: 142 deviceMemorySize: 44.52GiB deviceMemoryBandwidth: 804.75GiB/s 2026-08-06 14:14:19.375299: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcudart.so.11.0 2026-08-06 14:14:19.894171: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcublas.so.11 2026-08-06 14:14:19.894297: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcublasLt.so.11 2026-08-06 14:14:20.337141: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcufft.so.10 2026-08-06 14:14:20.826231: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcurand.so.10 2026-08-06 14:14:21.396829: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcusolver.so.10 2026-08-06 14:14:21.573170: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcusparse.so.11 2026-08-06 14:14:21.773304: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcudnn.so.8 2026-08-06 14:14:21.773798: I tensorflow/core/common_runtime/gpu/gpu_device.cc:1862] Adding visible gpu devices: 0 2026-08-06 14:14:21.774206: I tensorflow/core/platform/cpu_feature_guard.cc:142] This TensorFlow binary is optimized with oneAPI Deep Neural Network Library (oneDNN) to use the following CPU instructions in performance-critical operations: AVX2 AVX512F FMA To enable them in other operations, rebuild TensorFlow with the appropriate compiler flags. 2026-08-06 14:14:21.774342: I tensorflow/compiler/jit/xla_gpu_device.cc:99] Not creating XLA devices, tf_xla_enable_xla_devices not set 2026-08-06 14:14:21.774683: I tensorflow/core/common_runtime/gpu/gpu_device.cc:1720] Found device 0 with properties: pciBusID: 0000:ca:00.0 name: NVIDIA L40S computeCapability: 8.9 coreClock: 2.52GHz coreCount: 142 deviceMemorySize: 44.52GiB deviceMemoryBandwidth: 804.75GiB/s 2026-08-06 14:14:21.774707: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcudart.so.11.0 2026-08-06 14:14:21.774724: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcublas.so.11 2026-08-06 14:14:21.774735: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcublasLt.so.11 2026-08-06 14:14:21.774759: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcufft.so.10 2026-08-06 14:14:21.774769: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcurand.so.10 2026-08-06 14:14:21.774778: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcusolver.so.10 2026-08-06 14:14:21.774787: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcusparse.so.11 2026-08-06 14:14:21.774796: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcudnn.so.8 2026-08-06 14:14:21.775180: I tensorflow/core/common_runtime/gpu/gpu_device.cc:1862] Adding visible gpu devices: 0 2026-08-06 14:14:21.775201: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcudart.so.11.0 2026-08-06 14:14:24.163662: I tensorflow/core/common_runtime/gpu/gpu_device.cc:1261] Device interconnect StreamExecutor with strength 1 edge matrix: 2026-08-06 14:14:24.163749: I tensorflow/core/common_runtime/gpu/gpu_device.cc:1267] 0 2026-08-06 14:14:24.163760: I tensorflow/core/common_runtime/gpu/gpu_device.cc:1280] 0: N 2026-08-06 14:14:24.164416: I tensorflow/core/common_runtime/gpu/gpu_device.cc:1406] Created TensorFlow device (/job:localhost/replica:0/task:0/device:GPU:0 with 42313 MB memory) -> physical GPU (device: 0, name: NVIDIA L40S, pci bus id: 0000:ca:00.0, compute capability: 8.9) 2026-08-06 14:14:26.115181: I tensorflow/compiler/mlir/mlir_graph_optimization_pass.cc:116] None of the MLIR optimization passes are enabled (registered 2) 2026-08-06 14:14:26.115712: I tensorflow/core/platform/profile_utils/cpu_utils.cc:112] CPU Frequency: 2500000000 Hz 2026-08-06 14:14:27.316243: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcublas.so.11 2026-08-06 14:14:29.051529: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcublasLt.so.11 2026-08-06 14:14:29.055778: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcudnn.so.8 2026-08-06 14:14:42.579325: W tensorflow/stream_executor/gpu/asm_compiler.cc:63] Running ptxas --version returned 256 2026-08-06 14:14:42.678513: W tensorflow/stream_executor/gpu/redzone_allocator.cc:314] Internal: ptxas exited with non-zero error code 256, output: Relying on driver to perform ptx compilation. Modify $PATH to customize ptxas location. This message will be only logged once. 2026-08-06 14:15:02.728862: I tensorflow/stream_executor/cuda/cuda_blas.cc:1838] TensorFloat-32 will be used for the matrix multiplication. This will only be logged once. /home/users/shouvikm/miniconda3/envs/bpnet/lib/python3.7/site-packages/tensorflow/python/keras/engine/functional.py:595: UserWarning: Input dict contained keys ['coordinates', 'jitters', 'index', 'status', 'rev_comp'] which did not match any model input. They will be ignored by the model. [n for n in tensors.keys() if n not in ref_input_names]) /home/users/shouvikm/miniconda3/envs/bpnet/lib/python3.7/site-packages/tensorflow/python/keras/engine/functional.py:595: UserWarning: Input dict contained keys ['coordinates'] which did not match any model input. They will be ignored by the model. [n for n in tensors.keys() if n not in ref_input_names]) 2026-08-06 14:16:09.440066: W tensorflow/python/util/util.cc:348] Sets are not currently considered sequences, but this may change in the future, so consider avoiding using them. 2026-08-06 14:16:13.737255: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcudart.so.11.0 2026-08-06 14:16:23.010141: I tensorflow/compiler/jit/xla_cpu_device.cc:41] Not creating XLA devices, tf_xla_enable_xla_devices not set 2026-08-06 14:16:23.016207: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcuda.so.1 2026-08-06 14:16:23.046814: I tensorflow/core/common_runtime/gpu/gpu_device.cc:1720] Found device 0 with properties: pciBusID: 0000:ca:00.0 name: NVIDIA L40S computeCapability: 8.9 coreClock: 2.52GHz coreCount: 142 deviceMemorySize: 44.52GiB deviceMemoryBandwidth: 804.75GiB/s 2026-08-06 14:16:23.046890: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcudart.so.11.0 2026-08-06 14:16:23.053188: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcublas.so.11 2026-08-06 14:16:23.053283: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcublasLt.so.11 2026-08-06 14:16:23.056054: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcufft.so.10 2026-08-06 14:16:23.058883: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcurand.so.10 2026-08-06 14:16:23.063340: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcusolver.so.10 2026-08-06 14:16:23.065823: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcusparse.so.11 2026-08-06 14:16:23.068199: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcudnn.so.8 2026-08-06 14:16:23.068634: I tensorflow/core/common_runtime/gpu/gpu_device.cc:1862] Adding visible gpu devices: 0 2026-08-06 14:16:23.068941: I tensorflow/core/platform/cpu_feature_guard.cc:142] This TensorFlow binary is optimized with oneAPI Deep Neural Network Library (oneDNN) to use the following CPU instructions in performance-critical operations: AVX2 AVX512F FMA To enable them in other operations, rebuild TensorFlow with the appropriate compiler flags. 2026-08-06 14:16:23.069042: I tensorflow/compiler/jit/xla_gpu_device.cc:99] Not creating XLA devices, tf_xla_enable_xla_devices not set 2026-08-06 14:16:23.069250: I tensorflow/core/common_runtime/gpu/gpu_device.cc:1720] Found device 0 with properties: pciBusID: 0000:ca:00.0 name: NVIDIA L40S computeCapability: 8.9 coreClock: 2.52GHz coreCount: 142 deviceMemorySize: 44.52GiB deviceMemoryBandwidth: 804.75GiB/s 2026-08-06 14:16:23.069274: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcudart.so.11.0 2026-08-06 14:16:23.069287: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcublas.so.11 2026-08-06 14:16:23.069298: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcublasLt.so.11 2026-08-06 14:16:23.069308: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcufft.so.10 2026-08-06 14:16:23.069318: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcurand.so.10 2026-08-06 14:16:23.069328: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcusolver.so.10 2026-08-06 14:16:23.069338: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcusparse.so.11 2026-08-06 14:16:23.069348: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcudnn.so.8 2026-08-06 14:16:23.069619: I tensorflow/core/common_runtime/gpu/gpu_device.cc:1862] Adding visible gpu devices: 0 2026-08-06 14:16:23.069641: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcudart.so.11.0 2026-08-06 14:16:23.513001: I tensorflow/core/common_runtime/gpu/gpu_device.cc:1261] Device interconnect StreamExecutor with strength 1 edge matrix: 2026-08-06 14:16:23.513093: I tensorflow/core/common_runtime/gpu/gpu_device.cc:1267] 0 2026-08-06 14:16:23.513120: I tensorflow/core/common_runtime/gpu/gpu_device.cc:1280] 0: N 2026-08-06 14:16:23.513784: I tensorflow/core/common_runtime/gpu/gpu_device.cc:1406] Created TensorFlow device (/job:localhost/replica:0/task:0/device:GPU:0 with 42313 MB memory) -> physical GPU (device: 0, name: NVIDIA L40S, pci bus id: 0000:ca:00.0, compute capability: 8.9) /home/users/shouvikm/miniconda3/envs/bpnet/lib/python3.7/site-packages/tensorflow/python/keras/layers/core.py:1059: UserWarning: bpnet.model.arch is not loaded, but a Lambda layer uses it. It may cause errors. , UserWarning) batch: 0%| | 0/2 [00:00 physical GPU (device: 0, name: NVIDIA L40S, pci bus id: 0000:ca:00.0, compute capability: 8.9) 2026-08-06 14:17:08.235730: I tensorflow/compiler/mlir/mlir_graph_optimization_pass.cc:196] None of the MLIR optimization passes are enabled (registered 0 passes) 2026-08-06 14:17:08.252309: I tensorflow/core/platform/profile_utils/cpu_utils.cc:112] CPU Frequency: 2500000000 Hz 2026-08-06 14:17:09.279144: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcublas.so.11 2026-08-06 14:17:09.780147: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcublasLt.so.11 2026-08-06 14:17:09.783826: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcudnn.so.8 2026-08-06 14:17:11.303346: W tensorflow/stream_executor/gpu/asm_compiler.cc:63] Running ptxas --version returned 256 2026-08-06 14:17:11.404064: W tensorflow/stream_executor/gpu/redzone_allocator.cc:314] Internal: ptxas exited with non-zero error code 256, output: Relying on driver to perform ptx compilation. Modify $PATH to customize ptxas location. This message will be only logged once. 2026-08-06 14:17:28.656041: I tensorflow/stream_executor/cuda/cuda_blas.cc:1838] TensorFloat-32 will be used for the matrix multiplication. This will only be logged once. RuntimeError: module compiled against API version 0xe but this version of numpy is 0xd /home/users/shouvikm/miniconda3/envs/bpnet/lib/python3.7/site-packages/tensorflow/python/keras/layers/core.py:1059: UserWarning: bpnet.model.arch is not loaded, but a Lambda layer uses it. It may cause errors. , UserWarning)