Lmod Warning:
-------------------------------------------------------------------------------
The following dependent module(s) are not currently loaded: curl/8.4.0
(required by: htslib/1.16)
-------------------------------------------------------------------------------



Lmod Warning:
-------------------------------------------------------------------------------
The following dependent module(s) are not currently loaded: curl/8.17.0
(required by: ucsc-utils/v489), openssl/3.0.7 (required by: curl/8.4.0)
-------------------------------------------------------------------------------




The following have been reloaded with a version change:
  1) curl/8.17.0 => curl/8.4.0

Lmod Warning:
-------------------------------------------------------------------------------
The following dependent module(s) are not currently loaded: curl/8.4.0
(required by: htslib/1.16)
-------------------------------------------------------------------------------




The following have been reloaded with a version change:
  1) curl/8.4.0 => curl/8.17.0

2026-08-06 14:06:54.098096: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcudart.so.11.0
2026-08-06 14:07:59.815321: I tensorflow/compiler/jit/xla_cpu_device.cc:41] Not creating XLA devices, tf_xla_enable_xla_devices not set
2026-08-06 14:07:59.824292: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcuda.so.1
2026-08-06 14:07:59.851955: I tensorflow/core/common_runtime/gpu/gpu_device.cc:1720] Found device 0 with properties: 
pciBusID: 0000:e1:00.0 name: NVIDIA L40S computeCapability: 8.9
coreClock: 2.52GHz coreCount: 142 deviceMemorySize: 44.52GiB deviceMemoryBandwidth: 804.75GiB/s
2026-08-06 14:07:59.852026: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcudart.so.11.0
2026-08-06 14:07:59.857826: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcublas.so.11
2026-08-06 14:07:59.857916: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcublasLt.so.11
2026-08-06 14:07:59.860523: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcufft.so.10
2026-08-06 14:07:59.862297: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcurand.so.10
2026-08-06 14:07:59.866158: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcusolver.so.10
2026-08-06 14:07:59.868195: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcusparse.so.11
2026-08-06 14:07:59.869721: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcudnn.so.8
2026-08-06 14:07:59.870168: I tensorflow/core/common_runtime/gpu/gpu_device.cc:1862] Adding visible gpu devices: 0
2026-08-06 14:07:59.870591: I tensorflow/core/platform/cpu_feature_guard.cc:142] This TensorFlow binary is optimized with oneAPI Deep Neural Network Library (oneDNN) to use the following CPU instructions in performance-critical operations:  AVX2 AVX512F FMA
To enable them in other operations, rebuild TensorFlow with the appropriate compiler flags.
2026-08-06 14:07:59.870691: I tensorflow/compiler/jit/xla_gpu_device.cc:99] Not creating XLA devices, tf_xla_enable_xla_devices not set
2026-08-06 14:07:59.870915: I tensorflow/core/common_runtime/gpu/gpu_device.cc:1720] Found device 0 with properties: 
pciBusID: 0000:e1:00.0 name: NVIDIA L40S computeCapability: 8.9
coreClock: 2.52GHz coreCount: 142 deviceMemorySize: 44.52GiB deviceMemoryBandwidth: 804.75GiB/s
2026-08-06 14:07:59.870934: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcudart.so.11.0
2026-08-06 14:07:59.870950: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcublas.so.11
2026-08-06 14:07:59.870959: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcublasLt.so.11
2026-08-06 14:07:59.870986: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcufft.so.10
2026-08-06 14:07:59.870995: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcurand.so.10
2026-08-06 14:07:59.871005: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcusolver.so.10
2026-08-06 14:07:59.871014: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcusparse.so.11
2026-08-06 14:07:59.871023: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcudnn.so.8
2026-08-06 14:07:59.871293: I tensorflow/core/common_runtime/gpu/gpu_device.cc:1862] Adding visible gpu devices: 0
2026-08-06 14:07:59.871314: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcudart.so.11.0
2026-08-06 14:08:00.301484: I tensorflow/core/common_runtime/gpu/gpu_device.cc:1261] Device interconnect StreamExecutor with strength 1 edge matrix:
2026-08-06 14:08:00.301554: I tensorflow/core/common_runtime/gpu/gpu_device.cc:1267]      0 
2026-08-06 14:08:00.301565: I tensorflow/core/common_runtime/gpu/gpu_device.cc:1280] 0:   N 
2026-08-06 14:08:00.302222: I tensorflow/core/common_runtime/gpu/gpu_device.cc:1406] Created TensorFlow device (/job:localhost/replica:0/task:0/device:GPU:0 with 42313 MB memory) -> physical GPU (device: 0, name: NVIDIA L40S, pci bus id: 0000:e1:00.0, compute capability: 8.9)
2026-08-06 14:08:02.415056: I tensorflow/compiler/mlir/mlir_graph_optimization_pass.cc:116] None of the MLIR optimization passes are enabled (registered 2)
2026-08-06 14:08:02.415541: I tensorflow/core/platform/profile_utils/cpu_utils.cc:112] CPU Frequency: 2500000000 Hz
2026-08-06 14:08:11.009446: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcublas.so.11
2026-08-06 14:08:14.322604: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcublasLt.so.11
2026-08-06 14:08:14.358205: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcudnn.so.8
2026-08-06 14:08:24.072437: W tensorflow/stream_executor/gpu/asm_compiler.cc:63] Running ptxas --version returned 256
2026-08-06 14:08:24.745880: W tensorflow/stream_executor/gpu/redzone_allocator.cc:314] Internal: ptxas exited with non-zero error code 256, output: 
Relying on driver to perform ptx compilation. 
Modify $PATH to customize ptxas location.
This message will be only logged once.
2026-08-06 14:08:49.101627: I tensorflow/stream_executor/cuda/cuda_blas.cc:1838] TensorFloat-32 will be used for the matrix multiplication. This will only be logged once.
/home/users/shouvikm/miniconda3/envs/bpnet/lib/python3.7/site-packages/tensorflow/python/keras/engine/functional.py:595: UserWarning: Input dict contained keys ['coordinates', 'jitters', 'index', 'status', 'rev_comp'] which did not match any model input. They will be ignored by the model.
  [n for n in tensors.keys() if n not in ref_input_names])
/home/users/shouvikm/miniconda3/envs/bpnet/lib/python3.7/site-packages/tensorflow/python/keras/engine/functional.py:595: UserWarning: Input dict contained keys ['coordinates'] which did not match any model input. They will be ignored by the model.
  [n for n in tensors.keys() if n not in ref_input_names])
2026-08-06 14:32:27.772623: W tensorflow/python/util/util.cc:348] Sets are not currently considered sequences, but this may change in the future, so consider avoiding using them.
2026-08-06 14:32:34.135750: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcudart.so.11.0
2026-08-06 14:32:41.599028: I tensorflow/compiler/jit/xla_cpu_device.cc:41] Not creating XLA devices, tf_xla_enable_xla_devices not set
2026-08-06 14:32:41.600068: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcuda.so.1
2026-08-06 14:32:41.628562: I tensorflow/core/common_runtime/gpu/gpu_device.cc:1720] Found device 0 with properties: 
pciBusID: 0000:e1:00.0 name: NVIDIA L40S computeCapability: 8.9
coreClock: 2.52GHz coreCount: 142 deviceMemorySize: 44.52GiB deviceMemoryBandwidth: 804.75GiB/s
2026-08-06 14:32:41.628640: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcudart.so.11.0
2026-08-06 14:32:41.634596: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcublas.so.11
2026-08-06 14:32:41.634684: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcublasLt.so.11
2026-08-06 14:32:41.637336: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcufft.so.10
2026-08-06 14:32:41.639103: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcurand.so.10
2026-08-06 14:32:41.642923: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcusolver.so.10
2026-08-06 14:32:41.645133: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcusparse.so.11
2026-08-06 14:32:41.646721: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcudnn.so.8
2026-08-06 14:32:41.647186: I tensorflow/core/common_runtime/gpu/gpu_device.cc:1862] Adding visible gpu devices: 0
2026-08-06 14:32:41.647526: I tensorflow/core/platform/cpu_feature_guard.cc:142] This TensorFlow binary is optimized with oneAPI Deep Neural Network Library (oneDNN) to use the following CPU instructions in performance-critical operations:  AVX2 AVX512F FMA
To enable them in other operations, rebuild TensorFlow with the appropriate compiler flags.
2026-08-06 14:32:41.647629: I tensorflow/compiler/jit/xla_gpu_device.cc:99] Not creating XLA devices, tf_xla_enable_xla_devices not set
2026-08-06 14:32:41.647830: I tensorflow/core/common_runtime/gpu/gpu_device.cc:1720] Found device 0 with properties: 
pciBusID: 0000:e1:00.0 name: NVIDIA L40S computeCapability: 8.9
coreClock: 2.52GHz coreCount: 142 deviceMemorySize: 44.52GiB deviceMemoryBandwidth: 804.75GiB/s
2026-08-06 14:32:41.647849: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcudart.so.11.0
2026-08-06 14:32:41.647863: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcublas.so.11
2026-08-06 14:32:41.647873: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcublasLt.so.11
2026-08-06 14:32:41.647883: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcufft.so.10
2026-08-06 14:32:41.647900: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcurand.so.10
2026-08-06 14:32:41.647910: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcusolver.so.10
2026-08-06 14:32:41.647920: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcusparse.so.11
2026-08-06 14:32:41.647930: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcudnn.so.8
2026-08-06 14:32:41.648201: I tensorflow/core/common_runtime/gpu/gpu_device.cc:1862] Adding visible gpu devices: 0
2026-08-06 14:32:41.648222: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcudart.so.11.0
2026-08-06 14:32:42.086829: I tensorflow/core/common_runtime/gpu/gpu_device.cc:1261] Device interconnect StreamExecutor with strength 1 edge matrix:
2026-08-06 14:32:42.086910: I tensorflow/core/common_runtime/gpu/gpu_device.cc:1267]      0 
2026-08-06 14:32:42.086936: I tensorflow/core/common_runtime/gpu/gpu_device.cc:1280] 0:   N 
2026-08-06 14:32:42.087623: I tensorflow/core/common_runtime/gpu/gpu_device.cc:1406] Created TensorFlow device (/job:localhost/replica:0/task:0/device:GPU:0 with 42313 MB memory) -> physical GPU (device: 0, name: NVIDIA L40S, pci bus id: 0000:e1:00.0, compute capability: 8.9)
/home/users/shouvikm/miniconda3/envs/bpnet/lib/python3.7/site-packages/tensorflow/python/keras/layers/core.py:1059: UserWarning: bpnet.model.arch is not loaded, but a Lambda layer uses it. It may cause errors.
  , UserWarning)

batch:   0%|          | 0/188 [00:00<?, ?it/s]2026-08-06 14:32:43.778931: I tensorflow/compiler/mlir/mlir_graph_optimization_pass.cc:116] None of the MLIR optimization passes are enabled (registered 2)
2026-08-06 14:32:43.779440: I tensorflow/core/platform/profile_utils/cpu_utils.cc:112] CPU Frequency: 2500000000 Hz
2026-08-06 14:32:44.196474: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcublas.so.11
2026-08-06 14:32:45.309198: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcublasLt.so.11
2026-08-06 14:32:45.311322: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcudnn.so.8
2026-08-06 14:32:48.225003: W tensorflow/stream_executor/gpu/asm_compiler.cc:63] Running ptxas --version returned 256
2026-08-06 14:32:48.443123: W tensorflow/stream_executor/gpu/redzone_allocator.cc:314] Internal: ptxas exited with non-zero error code 256, output: 
Relying on driver to perform ptx compilation. 
Modify $PATH to customize ptxas location.
This message will be only logged once.
/home/users/shouvikm/miniconda3/envs/bpnet/lib/python3.7/site-packages/tensorflow/python/keras/engine/functional.py:595: UserWarning: Input dict contained keys ['coordinates', 'true_profiles', 'true_logcounts', 'rev_comp'] which did not match any model input. They will be ignored by the model.
  [n for n in tensors.keys() if n not in ref_input_names])

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2026-08-06 14:34:46.485801: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcudart.so.11.0
2026-08-06 14:34:54.734124: I tensorflow/compiler/jit/xla_cpu_device.cc:41] Not creating XLA devices, tf_xla_enable_xla_devices not set
2026-08-06 14:34:54.735592: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcuda.so.1
2026-08-06 14:34:54.764340: I tensorflow/core/common_runtime/gpu/gpu_device.cc:1720] Found device 0 with properties: 
pciBusID: 0000:e1:00.0 name: NVIDIA L40S computeCapability: 8.9
coreClock: 2.52GHz coreCount: 142 deviceMemorySize: 44.52GiB deviceMemoryBandwidth: 804.75GiB/s
2026-08-06 14:34:54.764441: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcudart.so.11.0
2026-08-06 14:34:54.769363: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcublas.so.11
2026-08-06 14:34:54.769474: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcublasLt.so.11
2026-08-06 14:34:54.771846: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcufft.so.10
2026-08-06 14:34:54.773396: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcurand.so.10
2026-08-06 14:34:54.776748: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcusolver.so.10
2026-08-06 14:34:54.778530: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcusparse.so.11
2026-08-06 14:34:54.780085: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcudnn.so.8
2026-08-06 14:34:54.780529: I tensorflow/core/common_runtime/gpu/gpu_device.cc:1862] Adding visible gpu devices: 0
2026-08-06 14:34:54.781005: I tensorflow/core/platform/cpu_feature_guard.cc:142] This TensorFlow binary is optimized with oneAPI Deep Neural Network Library (oneDNN) to use the following CPU instructions in performance-critical operations:  AVX2 AVX512F FMA
To enable them in other operations, rebuild TensorFlow with the appropriate compiler flags.
2026-08-06 14:34:54.781088: I tensorflow/compiler/jit/xla_gpu_device.cc:99] Not creating XLA devices, tf_xla_enable_xla_devices not set
2026-08-06 14:34:54.781312: I tensorflow/core/common_runtime/gpu/gpu_device.cc:1720] Found device 0 with properties: 
pciBusID: 0000:e1:00.0 name: NVIDIA L40S computeCapability: 8.9
coreClock: 2.52GHz coreCount: 142 deviceMemorySize: 44.52GiB deviceMemoryBandwidth: 804.75GiB/s
2026-08-06 14:34:54.781340: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcudart.so.11.0
2026-08-06 14:34:54.781355: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcublas.so.11
2026-08-06 14:34:54.781369: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcublasLt.so.11
2026-08-06 14:34:54.781381: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcufft.so.10
2026-08-06 14:34:54.781394: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcurand.so.10
2026-08-06 14:34:54.781406: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcusolver.so.10
2026-08-06 14:34:54.781419: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcusparse.so.11
2026-08-06 14:34:54.781432: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcudnn.so.8
2026-08-06 14:34:54.781712: I tensorflow/core/common_runtime/gpu/gpu_device.cc:1862] Adding visible gpu devices: 0
2026-08-06 14:34:54.781738: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcudart.so.11.0
2026-08-06 14:34:55.208175: I tensorflow/core/common_runtime/gpu/gpu_device.cc:1261] Device interconnect StreamExecutor with strength 1 edge matrix:
2026-08-06 14:34:55.208260: I tensorflow/core/common_runtime/gpu/gpu_device.cc:1267]      0 
2026-08-06 14:34:55.208270: I tensorflow/core/common_runtime/gpu/gpu_device.cc:1280] 0:   N 
2026-08-06 14:34:55.208975: I tensorflow/core/common_runtime/gpu/gpu_device.cc:1406] Created TensorFlow device (/job:localhost/replica:0/task:0/device:GPU:0 with 42313 MB memory) -> physical GPU (device: 0, name: NVIDIA L40S, pci bus id: 0000:e1:00.0, compute capability: 8.9)
2026-08-06 14:34:55.249657: I tensorflow/compiler/mlir/mlir_graph_optimization_pass.cc:196] None of the MLIR optimization passes are enabled (registered 0 passes)
2026-08-06 14:34:55.264909: I tensorflow/core/platform/profile_utils/cpu_utils.cc:112] CPU Frequency: 2500000000 Hz
2026-08-06 14:35:03.726986: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcublas.so.11
2026-08-06 14:35:04.223681: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcublasLt.so.11
2026-08-06 14:35:04.227555: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcudnn.so.8
2026-08-06 14:35:05.824586: W tensorflow/stream_executor/gpu/asm_compiler.cc:63] Running ptxas --version returned 256
2026-08-06 14:35:05.933421: W tensorflow/stream_executor/gpu/redzone_allocator.cc:314] Internal: ptxas exited with non-zero error code 256, output: 
Relying on driver to perform ptx compilation. 
Modify $PATH to customize ptxas location.
This message will be only logged once.
2026-08-06 14:35:24.128453: I tensorflow/stream_executor/cuda/cuda_blas.cc:1838] TensorFloat-32 will be used for the matrix multiplication. This will only be logged once.
RuntimeError: module compiled against API version 0xe but this version of numpy is 0xd
/home/users/shouvikm/miniconda3/envs/bpnet/lib/python3.7/site-packages/tensorflow/python/keras/layers/core.py:1059: UserWarning: bpnet.model.arch is not loaded, but a Lambda layer uses it. It may cause errors.
  , UserWarning)