Lmod Warning:
-------------------------------------------------------------------------------
The following dependent module(s) are not currently loaded: curl/8.4.0
(required by: htslib/1.16)
-------------------------------------------------------------------------------



Lmod Warning:
-------------------------------------------------------------------------------
The following dependent module(s) are not currently loaded: curl/8.17.0
(required by: ucsc-utils/v489), openssl/3.0.7 (required by: curl/8.4.0)
-------------------------------------------------------------------------------




The following have been reloaded with a version change:
  1) curl/8.17.0 => curl/8.4.0

Lmod Warning:
-------------------------------------------------------------------------------
The following dependent module(s) are not currently loaded: curl/8.4.0
(required by: htslib/1.16)
-------------------------------------------------------------------------------




The following have been reloaded with a version change:
  1) curl/8.4.0 => curl/8.17.0

2026-07-10 15:19:53.212949: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcudart.so.11.0
2026-07-10 15:25:22.033836: I tensorflow/compiler/jit/xla_cpu_device.cc:41] Not creating XLA devices, tf_xla_enable_xla_devices not set
2026-07-10 15:25:22.050135: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcuda.so.1
2026-07-10 15:25:22.146920: I tensorflow/core/common_runtime/gpu/gpu_device.cc:1720] Found device 0 with properties: 
pciBusID: 0000:e1:00.0 name: NVIDIA L40S computeCapability: 8.9
coreClock: 2.52GHz coreCount: 142 deviceMemorySize: 44.52GiB deviceMemoryBandwidth: 804.75GiB/s
2026-07-10 15:25:22.146976: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcudart.so.11.0
2026-07-10 15:25:22.682855: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcublas.so.11
2026-07-10 15:25:22.682956: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcublasLt.so.11
2026-07-10 15:25:23.131870: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcufft.so.10
2026-07-10 15:25:23.585330: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcurand.so.10
2026-07-10 15:25:24.262212: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcusolver.so.10
2026-07-10 15:25:24.405051: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcusparse.so.11
2026-07-10 15:25:24.612714: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcudnn.so.8
2026-07-10 15:25:24.613169: I tensorflow/core/common_runtime/gpu/gpu_device.cc:1862] Adding visible gpu devices: 0
2026-07-10 15:25:24.613558: I tensorflow/core/platform/cpu_feature_guard.cc:142] This TensorFlow binary is optimized with oneAPI Deep Neural Network Library (oneDNN) to use the following CPU instructions in performance-critical operations:  AVX2 AVX512F FMA
To enable them in other operations, rebuild TensorFlow with the appropriate compiler flags.
2026-07-10 15:25:24.613620: I tensorflow/compiler/jit/xla_gpu_device.cc:99] Not creating XLA devices, tf_xla_enable_xla_devices not set
2026-07-10 15:25:24.613822: I tensorflow/core/common_runtime/gpu/gpu_device.cc:1720] Found device 0 with properties: 
pciBusID: 0000:e1:00.0 name: NVIDIA L40S computeCapability: 8.9
coreClock: 2.52GHz coreCount: 142 deviceMemorySize: 44.52GiB deviceMemoryBandwidth: 804.75GiB/s
2026-07-10 15:25:24.613839: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcudart.so.11.0
2026-07-10 15:25:24.613855: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcublas.so.11
2026-07-10 15:25:24.613865: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcublasLt.so.11
2026-07-10 15:25:24.613888: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcufft.so.10
2026-07-10 15:25:24.613898: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcurand.so.10
2026-07-10 15:25:24.613907: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcusolver.so.10
2026-07-10 15:25:24.613916: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcusparse.so.11
2026-07-10 15:25:24.613925: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcudnn.so.8
2026-07-10 15:25:24.614200: I tensorflow/core/common_runtime/gpu/gpu_device.cc:1862] Adding visible gpu devices: 0
2026-07-10 15:25:24.614220: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcudart.so.11.0
2026-07-10 15:25:27.053497: I tensorflow/core/common_runtime/gpu/gpu_device.cc:1261] Device interconnect StreamExecutor with strength 1 edge matrix:
2026-07-10 15:25:27.053558: I tensorflow/core/common_runtime/gpu/gpu_device.cc:1267]      0 
2026-07-10 15:25:27.053569: I tensorflow/core/common_runtime/gpu/gpu_device.cc:1280] 0:   N 
2026-07-10 15:25:27.054216: I tensorflow/core/common_runtime/gpu/gpu_device.cc:1406] Created TensorFlow device (/job:localhost/replica:0/task:0/device:GPU:0 with 42313 MB memory) -> physical GPU (device: 0, name: NVIDIA L40S, pci bus id: 0000:e1:00.0, compute capability: 8.9)
2026-07-10 15:25:39.008409: I tensorflow/compiler/mlir/mlir_graph_optimization_pass.cc:116] None of the MLIR optimization passes are enabled (registered 2)
2026-07-10 15:25:39.008840: I tensorflow/core/platform/profile_utils/cpu_utils.cc:112] CPU Frequency: 2500000000 Hz
2026-07-10 15:25:41.990190: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcublas.so.11
2026-07-10 15:25:43.825937: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcublasLt.so.11
2026-07-10 15:25:43.830678: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcudnn.so.8
2026-07-10 15:25:57.966710: W tensorflow/stream_executor/gpu/asm_compiler.cc:63] Running ptxas --version returned 256
2026-07-10 15:25:58.056567: W tensorflow/stream_executor/gpu/redzone_allocator.cc:314] Internal: ptxas exited with non-zero error code 256, output: 
Relying on driver to perform ptx compilation. 
Modify $PATH to customize ptxas location.
This message will be only logged once.
2026-07-10 15:26:59.663076: I tensorflow/stream_executor/cuda/cuda_blas.cc:1838] TensorFloat-32 will be used for the matrix multiplication. This will only be logged once.
/home/users/shouvikm/miniconda3/envs/bpnet/lib/python3.7/site-packages/tensorflow/python/keras/engine/functional.py:595: UserWarning: Input dict contained keys ['coordinates', 'jitters', 'index', 'status', 'rev_comp'] which did not match any model input. They will be ignored by the model.
  [n for n in tensors.keys() if n not in ref_input_names])
/home/users/shouvikm/miniconda3/envs/bpnet/lib/python3.7/site-packages/tensorflow/python/keras/engine/functional.py:595: UserWarning: Input dict contained keys ['coordinates'] which did not match any model input. They will be ignored by the model.
  [n for n in tensors.keys() if n not in ref_input_names])
2026-07-10 16:10:42.597275: W tensorflow/python/util/util.cc:348] Sets are not currently considered sequences, but this may change in the future, so consider avoiding using them.
2026-07-10 16:10:46.587508: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcudart.so.11.0
2026-07-10 16:10:53.067358: I tensorflow/compiler/jit/xla_cpu_device.cc:41] Not creating XLA devices, tf_xla_enable_xla_devices not set
2026-07-10 16:10:53.068337: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcuda.so.1
2026-07-10 16:10:53.095365: I tensorflow/core/common_runtime/gpu/gpu_device.cc:1720] Found device 0 with properties: 
pciBusID: 0000:e1:00.0 name: NVIDIA L40S computeCapability: 8.9
coreClock: 2.52GHz coreCount: 142 deviceMemorySize: 44.52GiB deviceMemoryBandwidth: 804.75GiB/s
2026-07-10 16:10:53.095419: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcudart.so.11.0
2026-07-10 16:10:53.099716: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcublas.so.11
2026-07-10 16:10:53.099783: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcublasLt.so.11
2026-07-10 16:10:53.101867: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcufft.so.10
2026-07-10 16:10:53.103028: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcurand.so.10
2026-07-10 16:10:53.106261: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcusolver.so.10
2026-07-10 16:10:53.107845: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcusparse.so.11
2026-07-10 16:10:53.108885: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcudnn.so.8
2026-07-10 16:10:53.109270: I tensorflow/core/common_runtime/gpu/gpu_device.cc:1862] Adding visible gpu devices: 0
2026-07-10 16:10:53.109530: I tensorflow/core/platform/cpu_feature_guard.cc:142] This TensorFlow binary is optimized with oneAPI Deep Neural Network Library (oneDNN) to use the following CPU instructions in performance-critical operations:  AVX2 AVX512F FMA
To enable them in other operations, rebuild TensorFlow with the appropriate compiler flags.
2026-07-10 16:10:53.109587: I tensorflow/compiler/jit/xla_gpu_device.cc:99] Not creating XLA devices, tf_xla_enable_xla_devices not set
2026-07-10 16:10:53.109769: I tensorflow/core/common_runtime/gpu/gpu_device.cc:1720] Found device 0 with properties: 
pciBusID: 0000:e1:00.0 name: NVIDIA L40S computeCapability: 8.9
coreClock: 2.52GHz coreCount: 142 deviceMemorySize: 44.52GiB deviceMemoryBandwidth: 804.75GiB/s
2026-07-10 16:10:53.109786: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcudart.so.11.0
2026-07-10 16:10:53.109798: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcublas.so.11
2026-07-10 16:10:53.109808: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcublasLt.so.11
2026-07-10 16:10:53.109818: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcufft.so.10
2026-07-10 16:10:53.109828: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcurand.so.10
2026-07-10 16:10:53.109838: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcusolver.so.10
2026-07-10 16:10:53.109847: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcusparse.so.11
2026-07-10 16:10:53.109857: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcudnn.so.8
2026-07-10 16:10:53.110129: I tensorflow/core/common_runtime/gpu/gpu_device.cc:1862] Adding visible gpu devices: 0
2026-07-10 16:10:53.110149: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcudart.so.11.0
2026-07-10 16:10:53.531883: I tensorflow/core/common_runtime/gpu/gpu_device.cc:1261] Device interconnect StreamExecutor with strength 1 edge matrix:
2026-07-10 16:10:53.531965: I tensorflow/core/common_runtime/gpu/gpu_device.cc:1267]      0 
2026-07-10 16:10:53.531992: I tensorflow/core/common_runtime/gpu/gpu_device.cc:1280] 0:   N 
2026-07-10 16:10:53.532661: I tensorflow/core/common_runtime/gpu/gpu_device.cc:1406] Created TensorFlow device (/job:localhost/replica:0/task:0/device:GPU:0 with 42313 MB memory) -> physical GPU (device: 0, name: NVIDIA L40S, pci bus id: 0000:e1:00.0, compute capability: 8.9)
/home/users/shouvikm/miniconda3/envs/bpnet/lib/python3.7/site-packages/tensorflow/python/keras/layers/core.py:1059: UserWarning: bpnet.model.arch is not loaded, but a Lambda layer uses it. It may cause errors.
  , UserWarning)

batch:   0%|          | 0/216 [00:00<?, ?it/s]2026-07-10 16:10:55.341854: I tensorflow/compiler/mlir/mlir_graph_optimization_pass.cc:116] None of the MLIR optimization passes are enabled (registered 2)
2026-07-10 16:10:55.342331: I tensorflow/core/platform/profile_utils/cpu_utils.cc:112] CPU Frequency: 2500000000 Hz
2026-07-10 16:10:55.949647: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcublas.so.11
2026-07-10 16:10:57.533879: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcublasLt.so.11
2026-07-10 16:10:57.543757: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcudnn.so.8
2026-07-10 16:11:02.547099: W tensorflow/stream_executor/gpu/asm_compiler.cc:63] Running ptxas --version returned 256
2026-07-10 16:11:02.872232: W tensorflow/stream_executor/gpu/redzone_allocator.cc:314] Internal: ptxas exited with non-zero error code 256, output: 
Relying on driver to perform ptx compilation. 
Modify $PATH to customize ptxas location.
This message will be only logged once.
/home/users/shouvikm/miniconda3/envs/bpnet/lib/python3.7/site-packages/tensorflow/python/keras/engine/functional.py:595: UserWarning: Input dict contained keys ['coordinates', 'true_profiles', 'true_logcounts', 'rev_comp'] which did not match any model input. They will be ignored by the model.
  [n for n in tensors.keys() if n not in ref_input_names])

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2026-07-10 16:13:38.398814: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcudart.so.11.0
2026-07-10 16:13:46.420045: I tensorflow/compiler/jit/xla_cpu_device.cc:41] Not creating XLA devices, tf_xla_enable_xla_devices not set
2026-07-10 16:13:46.421083: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcuda.so.1
2026-07-10 16:13:46.449259: I tensorflow/core/common_runtime/gpu/gpu_device.cc:1720] Found device 0 with properties: 
pciBusID: 0000:e1:00.0 name: NVIDIA L40S computeCapability: 8.9
coreClock: 2.52GHz coreCount: 142 deviceMemorySize: 44.52GiB deviceMemoryBandwidth: 804.75GiB/s
2026-07-10 16:13:46.449328: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcudart.so.11.0
2026-07-10 16:13:46.453896: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcublas.so.11
2026-07-10 16:13:46.453990: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcublasLt.so.11
2026-07-10 16:13:46.456440: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcufft.so.10
2026-07-10 16:13:46.457841: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcurand.so.10
2026-07-10 16:13:46.461367: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcusolver.so.10
2026-07-10 16:13:46.463121: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcusparse.so.11
2026-07-10 16:13:46.464499: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcudnn.so.8
2026-07-10 16:13:46.464911: I tensorflow/core/common_runtime/gpu/gpu_device.cc:1862] Adding visible gpu devices: 0
2026-07-10 16:13:46.465208: I tensorflow/core/platform/cpu_feature_guard.cc:142] This TensorFlow binary is optimized with oneAPI Deep Neural Network Library (oneDNN) to use the following CPU instructions in performance-critical operations:  AVX2 AVX512F FMA
To enable them in other operations, rebuild TensorFlow with the appropriate compiler flags.
2026-07-10 16:13:46.465270: I tensorflow/compiler/jit/xla_gpu_device.cc:99] Not creating XLA devices, tf_xla_enable_xla_devices not set
2026-07-10 16:13:46.465479: I tensorflow/core/common_runtime/gpu/gpu_device.cc:1720] Found device 0 with properties: 
pciBusID: 0000:e1:00.0 name: NVIDIA L40S computeCapability: 8.9
coreClock: 2.52GHz coreCount: 142 deviceMemorySize: 44.52GiB deviceMemoryBandwidth: 804.75GiB/s
2026-07-10 16:13:46.465509: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcudart.so.11.0
2026-07-10 16:13:46.465524: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcublas.so.11
2026-07-10 16:13:46.465537: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcublasLt.so.11
2026-07-10 16:13:46.465550: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcufft.so.10
2026-07-10 16:13:46.465563: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcurand.so.10
2026-07-10 16:13:46.465575: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcusolver.so.10
2026-07-10 16:13:46.465587: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcusparse.so.11
2026-07-10 16:13:46.465615: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcudnn.so.8
2026-07-10 16:13:46.465900: I tensorflow/core/common_runtime/gpu/gpu_device.cc:1862] Adding visible gpu devices: 0
2026-07-10 16:13:46.465926: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcudart.so.11.0
2026-07-10 16:13:46.889267: I tensorflow/core/common_runtime/gpu/gpu_device.cc:1261] Device interconnect StreamExecutor with strength 1 edge matrix:
2026-07-10 16:13:46.889345: I tensorflow/core/common_runtime/gpu/gpu_device.cc:1267]      0 
2026-07-10 16:13:46.889354: I tensorflow/core/common_runtime/gpu/gpu_device.cc:1280] 0:   N 
2026-07-10 16:13:46.890085: I tensorflow/core/common_runtime/gpu/gpu_device.cc:1406] Created TensorFlow device (/job:localhost/replica:0/task:0/device:GPU:0 with 42313 MB memory) -> physical GPU (device: 0, name: NVIDIA L40S, pci bus id: 0000:e1:00.0, compute capability: 8.9)
2026-07-10 16:13:46.928351: I tensorflow/compiler/mlir/mlir_graph_optimization_pass.cc:196] None of the MLIR optimization passes are enabled (registered 0 passes)
2026-07-10 16:13:46.942422: I tensorflow/core/platform/profile_utils/cpu_utils.cc:112] CPU Frequency: 2500000000 Hz
2026-07-10 16:16:37.003184: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcublas.so.11
2026-07-10 16:16:37.487468: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcublasLt.so.11
2026-07-10 16:16:37.491680: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcudnn.so.8
2026-07-10 16:16:38.991802: W tensorflow/stream_executor/gpu/asm_compiler.cc:63] Running ptxas --version returned 256
2026-07-10 16:16:39.107615: W tensorflow/stream_executor/gpu/redzone_allocator.cc:314] Internal: ptxas exited with non-zero error code 256, output: 
Relying on driver to perform ptx compilation. 
Modify $PATH to customize ptxas location.
This message will be only logged once.
2026-07-10 16:16:58.669976: I tensorflow/stream_executor/cuda/cuda_blas.cc:1838] TensorFloat-32 will be used for the matrix multiplication. This will only be logged once.
RuntimeError: module compiled against API version 0xe but this version of numpy is 0xd
/home/users/shouvikm/miniconda3/envs/bpnet/lib/python3.7/site-packages/tensorflow/python/keras/layers/core.py:1059: UserWarning: bpnet.model.arch is not loaded, but a Lambda layer uses it. It may cause errors.
  , UserWarning)